Wall clock time and date at job start Tue Mar 31 2020 12:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47014 * 2 1 4 4 N 1.29994 * 126.21919 * 269.98135 * 3 2 1 5 5 O 1.21286 * 110.46337 * 179.76530 * 4 3 2 6 6 C 1.34008 * 109.74915 * 0.40108 * 5 4 3 7 7 N 1.37952 * 126.65178 * 179.86589 * 6 5 4 8 8 C 1.34774 * 120.00306 * 359.68912 * 7 6 5 9 9 O 1.21568 * 119.99711 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00502 * 180.27506 * 8 7 6 11 11 C 1.40011 * 120.00075 * 175.21695 * 10 8 7 12 12 C 1.38917 * 120.00099 * 214.85029 * 11 10 8 13 13 C 1.38011 * 119.99853 * 179.77296 * 12 11 10 14 14 C 1.38907 * 119.99952 * 0.50273 * 13 12 11 15 15 O 1.35779 * 119.99494 * 179.72393 * 14 13 12 16 16 C 1.34816 * 116.99858 * 185.36918 * 15 14 13 17 17 H 1.08003 * 119.99881 * 354.96501 * 16 15 14 18 18 C 1.38624 * 120.00182 * 174.96531 * 16 15 14 19 19 N 1.31579 * 120.00252 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47133 * 90.00431 * 20 18 16 22 22 H 1.48504 * 109.47210 * 210.00004 * 20 18 16 23 23 H 1.48493 * 109.47315 * 330.00161 * 20 18 16 24 24 C 1.38899 * 120.00016 * 359.75558 * 14 13 12 25 25 C 1.38006 * 120.00529 * 359.97438 * 24 14 13 26 26 N 1.32013 * 106.69445 * 359.60686 * 6 5 4 27 27 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47219 * 299.99353 * 1 2 3 29 29 H 1.08999 * 109.47584 * 59.99895 * 1 2 3 30 30 H 1.09000 * 109.46973 * 240.00762 * 2 1 3 31 31 H 1.08999 * 109.47584 * 120.00104 * 2 1 3 32 32 H 0.96999 * 120.00176 * 179.68319 * 7 6 5 33 33 H 0.97002 * 119.99657 * 355.21471 * 10 8 7 34 34 H 1.08002 * 119.99679 * 0.02676 * 12 11 10 35 35 H 1.07999 * 119.99536 * 180.25837 * 13 12 11 36 36 H 0.96990 * 120.00297 * 179.97438 * 19 18 16 37 37 H 1.08007 * 119.99867 * 179.97438 * 24 14 13 38 38 H 1.08001 * 120.00145 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2886 2.1449 -1.0487 5 8 2.6732 3.2471 -0.7194 6 6 2.7089 3.3335 0.6174 7 7 3.0956 4.4286 1.3618 8 6 3.4951 5.5572 0.7429 9 8 3.5152 5.6099 -0.4715 10 7 3.8782 6.6253 1.4701 11 6 4.3877 7.7616 0.8302 12 6 5.3922 8.5072 1.4342 13 6 5.8977 9.6246 0.8012 14 6 5.3948 10.0097 -0.4350 15 8 5.8883 11.1122 -1.0550 16 6 5.2825 11.4948 -2.1970 17 1 4.4979 10.8864 -2.6222 18 6 5.6666 12.6691 -2.8256 19 7 6.6221 13.4106 -2.3075 20 14 4.8277 13.1989 -4.4084 21 1 3.6530 14.0482 -4.0857 22 1 5.7839 13.9724 -5.2406 23 1 4.3792 11.9975 -5.1570 24 6 4.3867 9.2672 -1.0365 25 6 3.8850 8.1467 -0.4062 26 7 2.2969 2.1692 1.0838 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.0798 4.3865 2.3308 33 1 3.8008 6.6068 2.4368 34 1 5.7804 8.2101 2.3973 35 1 6.6816 10.2018 1.2690 36 1 6.8912 14.2320 -2.7475 37 1 3.9954 9.5669 -1.9975 38 1 3.1009 7.5697 -0.8738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365058248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:49 Heat of formation + Delta-G solvation = 31.810015 kcal Electronic energy + Delta-G solvation = -24960.645819 eV Core-core repulsion = 21000.306135 eV Total energy + Delta-G solvation = -3960.339683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.61492 -42.10062 -40.61241 -38.57697 -37.51833 -36.75188 -35.67477 -34.22424 -33.84398 -31.88458 -31.84062 -29.57168 -27.32637 -26.16639 -25.32947 -24.19385 -23.80061 -22.70657 -21.65447 -20.18722 -19.98976 -19.56496 -19.32300 -18.87613 -18.00069 -17.45262 -16.93678 -16.37471 -16.21648 -15.82905 -15.65508 -15.48950 -15.27475 -15.04984 -14.66247 -14.21835 -14.00404 -13.69008 -13.57635 -13.48972 -13.27490 -13.16309 -12.71990 -12.63183 -12.48150 -12.36872 -12.13643 -12.02309 -11.95080 -11.82779 -11.45932 -11.02715 -10.62276 -10.30931 -9.83497 -8.66486 -8.47027 -6.13469 -0.03732 0.32690 0.54120 0.61708 1.04866 1.35665 1.43340 1.52115 1.75599 1.83334 2.17942 2.58422 2.81528 2.97264 3.15200 3.36635 3.52510 4.08352 4.12423 4.17207 4.22195 4.27124 4.48441 4.53235 4.58988 4.64078 4.74832 4.90010 4.95792 5.03929 5.05896 5.11004 5.26176 5.29008 5.32427 5.53116 5.57096 5.70908 6.02697 6.12697 6.47652 6.97808 7.03682 7.12629 7.76831 8.75423 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023990 B = 0.002327 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.892844 B =12028.762076 C =13013.837261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.032 4.032 3 C 0.197 3.803 4 N -0.415 5.415 5 O 0.057 5.943 6 C 0.426 3.574 7 N -0.589 5.589 8 C 0.701 3.299 9 O -0.574 6.574 10 N -0.632 5.632 11 C 0.071 3.929 12 C -0.065 4.065 13 C -0.180 4.180 14 C 0.110 3.890 15 O -0.226 6.226 16 C -0.412 4.412 17 H 0.098 0.902 18 C -0.020 4.020 19 N -0.916 5.916 20 Si 1.014 2.986 21 H -0.262 1.262 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.231 4.231 25 C -0.072 4.072 26 N -0.506 5.506 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.457 0.543 33 H 0.434 0.566 34 H 0.175 0.825 35 H 0.131 0.869 36 H 0.273 0.727 37 H 0.115 0.885 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 -23.733 12.680 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.077 4.077 4 N -0.134 5.134 5 O 0.010 5.990 6 C 0.116 3.884 7 N -0.254 5.254 8 C 0.401 3.599 9 O -0.448 6.448 10 N -0.282 5.282 11 C -0.023 4.023 12 C -0.085 4.085 13 C -0.200 4.200 14 C 0.059 3.941 15 O -0.132 6.132 16 C -0.488 4.488 17 H 0.115 0.885 18 C -0.218 4.218 19 N -0.554 5.554 20 Si 0.834 3.166 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.251 4.251 25 C -0.092 4.092 26 N -0.251 5.251 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.303 0.697 33 H 0.274 0.726 34 H 0.192 0.808 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.308 -23.807 11.136 28.232 hybrid contribution -0.086 0.959 -0.102 0.968 sum -10.394 -22.848 11.033 27.419 Atomic orbital electron populations 1.21729 0.92353 1.04218 1.01872 1.20234 0.97430 0.83146 1.06309 1.26377 0.97606 1.01221 0.82491 1.74724 1.21803 0.92788 1.24076 1.85631 1.63304 1.27589 1.22483 1.24032 0.93559 0.89052 0.81798 1.41031 1.66356 1.07028 1.10970 1.15889 0.78628 0.80156 0.85244 1.91107 1.58377 1.82141 1.13205 1.41743 1.64640 1.10969 1.10871 1.17026 0.99576 0.90117 0.95545 1.20759 0.93281 0.93397 1.01068 1.20345 1.04937 1.00991 0.93689 1.20001 0.93123 0.87888 0.93107 1.83937 1.53209 1.38995 1.37065 1.21750 1.19908 1.07765 0.99404 0.88514 1.26495 0.97332 0.94753 1.03217 1.70167 1.29287 1.14590 1.41362 0.84643 0.77803 0.78898 0.75254 1.18675 1.19427 1.18234 1.21081 1.02418 0.98974 1.02592 1.20935 0.98923 0.94204 0.95158 1.72234 1.24589 1.00034 1.28247 0.88452 0.92412 0.93595 0.87839 0.86471 0.69659 0.72551 0.80802 0.85078 0.91793 0.86708 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 71.98 0.71 -0.75 16 2 C -0.03 -0.39 6.56 29.85 0.20 -0.20 16 3 C 0.20 4.20 7.46 138.50 1.03 5.24 16 4 N -0.41 -11.48 12.15 -58.98 -0.72 -12.20 16 5 O 0.06 1.69 9.69 92.14 0.89 2.58 16 6 C 0.43 9.76 8.99 179.13 1.61 11.37 16 7 N -0.59 -9.55 5.37 -438.71 -2.35 -11.91 16 8 C 0.70 16.31 8.36 179.06 1.50 17.81 16 9 O -0.57 -19.75 12.58 16.74 0.21 -19.54 16 10 N -0.63 -11.89 5.34 -317.07 -1.69 -13.59 16 11 C 0.07 2.07 6.30 38.16 0.24 2.31 16 12 C -0.07 -1.81 9.96 22.38 0.22 -1.58 16 13 C -0.18 -6.87 9.99 22.38 0.22 -6.64 16 14 C 0.11 5.31 6.65 22.59 0.15 5.46 16 15 O -0.23 -13.35 9.76 -22.92 -0.22 -13.57 16 16 C -0.41 -24.09 9.48 67.91 0.64 -23.45 16 17 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 18 C -0.02 -1.14 5.49 84.82 0.47 -0.67 16 19 N -0.92 -55.75 13.67 21.61 0.30 -55.46 16 20 Si 1.01 43.49 29.55 68.60 2.03 45.52 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C -0.23 -10.38 9.16 22.37 0.20 -10.18 16 25 C -0.07 -2.71 8.69 22.38 0.19 -2.51 16 26 N -0.51 -10.62 11.59 -311.87 -3.61 -14.23 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.46 2.90 8.84 -92.71 -0.82 2.08 16 33 H 0.43 3.47 8.84 -92.71 -0.82 2.65 16 34 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 36 H 0.27 15.22 8.31 -92.72 -0.77 14.45 16 37 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 38 H 0.13 4.80 6.22 -2.91 -0.02 4.78 16 Total: -1.00 -82.07 337.87 1.74 -80.33 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.48 Total: 15.87 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 7.40 Total: -3.81 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -8.08 Total: -107.38 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: 0.88 Total: -30.53 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -82.07 1.74 -80.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365058248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.142 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds