Wall clock time and date at job start Tue Mar 31 2020 12:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47047 * 274.95742 * 3 2 1 5 5 H 1.48491 * 109.47283 * 34.95865 * 3 2 1 6 6 H 1.48502 * 109.46919 * 154.96392 * 3 2 1 7 7 C 1.37875 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00379 * 185.94803 * 7 2 1 9 9 C 1.50703 * 120.00095 * 5.95291 * 7 2 1 10 10 O 1.42902 * 110.88379 * 295.01994 * 9 7 2 11 11 C 1.55157 * 111.00797 * 171.13974 * 9 7 2 12 12 C 1.54423 * 102.89398 * 206.40586 * 11 9 7 13 13 N 1.47025 * 107.28268 * 22.18703 * 12 11 9 14 14 C 1.34775 * 125.64588 * 181.09679 * 13 12 11 15 15 O 1.21575 * 119.99777 * 174.57784 * 14 13 12 16 16 C 1.47649 * 120.00475 * 354.57841 * 14 13 12 17 17 C 1.39799 * 121.07734 * 317.62598 * 16 14 13 18 18 C 1.38165 * 119.36701 * 179.76127 * 17 16 14 19 19 N 1.31839 * 121.55339 * 0.50650 * 18 17 16 20 20 C 1.31993 * 121.97553 * 359.74734 * 19 18 17 21 21 N 1.38269 * 133.69918 * 180.02562 * 20 19 18 22 22 H 0.96999 * 126.38713 * 0.03236 * 21 20 19 23 23 C 1.36385 * 107.22727 * 180.02562 * 21 20 19 24 24 O 1.35182 * 125.05686 * 180.02562 * 23 21 20 25 25 N 1.30994 * 109.88569 * 359.97438 * 23 21 20 26 26 C 1.34639 * 109.66585 * 0.02562 * 25 23 21 27 27 C 1.47430 * 108.70118 * 1.06006 * 13 12 11 28 28 H 0.96995 * 120.00568 * 359.97438 * 1 2 3 29 29 H 0.96707 * 114.00096 * 59.29687 * 10 9 7 30 30 H 1.09000 * 110.71685 * 324.74687 * 11 9 7 31 31 H 1.09002 * 110.71368 * 88.01846 * 11 9 7 32 32 H 1.09003 * 109.87835 * 262.76369 * 12 11 9 33 33 H 1.08996 * 110.00647 * 141.67974 * 12 11 9 34 34 H 1.08001 * 120.31500 * 359.96874 * 17 16 14 35 35 H 1.08003 * 119.22587 * 180.23123 * 18 17 16 36 36 H 0.96699 * 113.99492 * 269.98498 * 24 23 21 37 37 H 1.09005 * 110.35965 * 217.03353 * 27 13 12 38 38 H 1.08994 * 110.36401 * 94.71131 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3918 2.1070 -1.3948 5 1 1.5029 2.6202 0.8022 6 1 3.5952 1.4122 0.5925 7 6 2.0045 -1.1940 0.0005 8 1 3.0803 -1.1965 0.0975 9 6 1.2572 -2.4957 -0.1342 10 8 0.4082 -2.7149 0.9942 11 6 2.2376 -3.6821 -0.3313 12 6 1.3823 -4.7115 -1.1018 13 7 0.2944 -3.9716 -1.7581 14 6 -0.6818 -4.5150 -2.5119 15 8 -1.5885 -3.8190 -2.9261 16 6 -0.6503 -5.9554 -2.8346 17 6 0.5422 -6.5873 -3.1993 18 6 0.5321 -7.9381 -3.4892 19 7 -0.5790 -8.6460 -3.4399 20 6 -1.7371 -8.1069 -3.1075 21 7 -3.0208 -8.6045 -2.9797 22 1 -3.3001 -9.5213 -3.1289 23 6 -3.8211 -7.5658 -2.6044 24 8 -5.1509 -7.6528 -2.3775 25 7 -3.1092 -6.4716 -2.4954 26 6 -1.8227 -6.7367 -2.7911 27 6 0.4479 -2.5371 -1.4544 28 1 -0.4851 0.8400 0.0004 29 1 -0.2540 -2.0230 1.1284 30 1 3.0994 -3.3757 -0.9242 31 1 2.5536 -4.0850 0.6309 32 1 0.9675 -5.4424 -0.4076 33 1 1.9918 -5.2165 -1.8510 34 1 1.4632 -6.0256 -3.2506 35 1 1.4554 -8.4248 -3.7670 36 1 -5.6948 -7.4920 -3.1607 37 1 -0.5283 -2.0723 -1.3158 38 1 0.9973 -2.0372 -2.2521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434123979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:04 Heat of formation + Delta-G solvation = -15.223261 kcal Electronic energy + Delta-G solvation = -26615.981040 eV Core-core repulsion = 22653.601841 eV Total energy + Delta-G solvation = -3962.379199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59812 -39.69832 -38.70063 -37.18701 -37.07427 -34.29527 -33.79926 -32.22013 -31.66393 -30.01815 -29.46180 -27.82013 -25.64372 -24.27344 -23.39753 -22.63561 -21.92572 -19.96495 -19.61952 -19.15367 -18.22905 -17.38114 -17.18421 -16.87284 -16.15058 -15.56024 -15.35631 -15.08057 -14.68990 -14.61379 -14.28986 -14.17330 -13.52661 -13.03829 -12.92830 -12.76315 -12.54051 -12.27530 -12.01731 -11.61964 -11.47656 -11.27371 -11.05686 -11.02553 -10.76001 -10.59631 -10.47968 -10.17693 -9.83223 -9.37246 -9.19974 -9.03568 -8.68668 -8.58747 -8.33738 -7.78336 -6.27037 -4.36764 0.30181 0.97567 1.85322 2.37708 3.08843 3.21238 3.29727 3.31922 3.36306 3.44297 3.78674 4.11754 4.27424 4.43860 4.65124 4.69404 4.90580 5.00692 5.20317 5.39746 5.46474 5.63723 5.68436 5.81966 5.86538 6.05384 6.19026 6.23388 6.36482 6.50953 6.71854 6.84519 6.98056 7.18436 7.26205 7.37703 7.47079 7.60788 7.75044 8.02217 8.16500 8.65237 8.69287 9.31139 9.42763 10.80065 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.003525 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.308590 B = 7940.856382 C = 8647.206559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.100 3.900 13 N -0.602 5.602 14 C 0.564 3.436 15 O -0.520 6.520 16 C -0.012 4.012 17 C -0.153 4.153 18 C 0.137 3.863 19 N -0.474 5.474 20 C 0.247 3.753 21 N -0.588 5.588 22 H 0.428 0.572 23 C 0.463 3.537 24 O -0.435 6.435 25 N -0.454 5.454 26 C 0.058 3.942 27 C 0.096 3.904 28 H 0.271 0.729 29 H 0.383 0.617 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.413 0.587 37 H 0.088 0.912 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -17.269 -7.815 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.155 4.155 12 C -0.023 4.023 13 N -0.334 5.334 14 C 0.350 3.650 15 O -0.396 6.396 16 C -0.025 4.025 17 C -0.175 4.175 18 C -0.028 4.028 19 N -0.187 5.187 20 C 0.010 3.990 21 N -0.217 5.217 22 H 0.268 0.732 23 C 0.158 3.842 24 O -0.237 6.237 25 N -0.184 5.184 26 C -0.065 4.065 27 C -0.025 4.025 28 H 0.081 0.919 29 H 0.233 0.767 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.272 0.728 37 H 0.106 0.894 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.444 -17.474 -7.372 19.122 hybrid contribution -0.202 1.000 -0.646 1.208 sum -2.646 -16.474 -8.018 18.511 Atomic orbital electron populations 1.69709 1.06020 1.27978 1.49104 1.25086 0.94985 0.99753 0.93370 0.86411 0.79873 0.82599 0.78160 1.20439 1.21033 1.19663 1.21461 0.94144 0.90110 1.52162 0.91432 1.19637 0.86129 0.91467 0.82044 1.86101 1.50918 1.52552 1.49683 1.22646 0.97719 0.95661 0.99484 1.22215 0.88825 0.95648 0.95635 1.48642 1.25935 1.10816 1.48052 1.17476 0.81858 0.85766 0.79916 1.90813 1.33610 1.61929 1.53251 1.19792 0.90733 0.94374 0.97628 1.22345 0.97960 0.96136 1.01079 1.22491 0.94438 0.90528 0.95330 1.66165 0.96365 1.40406 1.15810 1.18502 0.86437 0.90704 1.03367 1.43034 1.06125 1.13077 1.59422 0.73208 1.20331 0.85087 0.82130 0.96623 1.84830 1.08990 1.91569 1.38286 1.70521 1.02684 1.23236 1.21927 1.19001 0.91792 0.91918 1.03799 1.23294 1.03044 0.76998 0.99200 0.91933 0.76686 0.90193 0.90653 0.92212 0.92222 0.82615 0.80836 0.72767 0.89371 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 10.71 55.43 0.59 -23.21 16 2 C 0.07 1.86 5.24 -17.82 -0.09 1.76 16 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -13.85 8.28 -34.44 -0.29 -14.14 16 8 H 0.07 1.69 7.80 -52.48 -0.41 1.28 16 9 C 0.25 5.94 0.88 -89.62 -0.08 5.86 16 10 O -0.58 -15.05 13.18 -35.23 -0.46 -15.51 16 11 C -0.12 -2.25 6.14 -24.84 -0.15 -2.40 16 12 C 0.10 1.71 5.89 -3.01 -0.02 1.69 16 13 N -0.60 -12.51 3.33 -171.64 -0.57 -13.08 16 14 C 0.56 11.97 7.48 -12.42 -0.09 11.87 16 15 O -0.52 -13.05 17.21 5.30 0.09 -12.96 16 16 C -0.01 -0.21 5.47 -104.44 -0.57 -0.78 16 17 C -0.15 -1.89 8.56 -39.02 -0.33 -2.23 16 18 C 0.14 1.43 11.14 -17.58 -0.20 1.23 16 19 N -0.47 -5.90 10.35 -12.25 -0.13 -6.03 16 20 C 0.25 3.40 8.46 -155.41 -1.32 2.09 16 21 N -0.59 -6.28 6.26 -13.33 -0.08 -6.36 16 22 H 0.43 2.90 8.96 -40.82 -0.37 2.53 16 23 C 0.46 5.85 9.39 -88.72 -0.83 5.01 16 24 O -0.44 -3.93 13.62 -17.24 -0.23 -4.17 16 25 N -0.45 -7.99 11.26 -12.07 -0.14 -8.13 16 26 C 0.06 0.99 6.90 -84.60 -0.58 0.41 16 27 C 0.10 2.29 5.40 -2.53 -0.01 2.28 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.38 10.21 7.50 45.56 0.34 10.55 16 30 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.78 5.65 -51.93 -0.29 0.49 16 34 H 0.16 1.60 5.98 -52.49 -0.31 1.28 16 35 H 0.17 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.41 1.35 9.06 45.56 0.41 1.76 16 37 H 0.09 2.42 7.30 -51.93 -0.38 2.04 16 38 H 0.06 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -35.41 326.97 -7.84 -43.24 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -2.24 Total: 13.46 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: -4.57 Total: 12.67 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.32 Total: -56.80 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.61 Total: -32.64 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.41 -7.84 -43.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434123979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.020 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds