Wall clock time and date at job start Tue Mar 31 2020 12:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47047 * 274.95742 * 3 2 1 5 5 H 1.48491 * 109.47283 * 34.95865 * 3 2 1 6 6 H 1.48502 * 109.46919 * 154.96392 * 3 2 1 7 7 C 1.37875 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00379 * 185.94803 * 7 2 1 9 9 C 1.50703 * 120.00095 * 5.95291 * 7 2 1 10 10 O 1.42902 * 110.88379 * 295.01994 * 9 7 2 11 11 C 1.55157 * 111.00797 * 171.13974 * 9 7 2 12 12 C 1.54423 * 102.89398 * 206.40586 * 11 9 7 13 13 N 1.47025 * 107.28268 * 22.18703 * 12 11 9 14 14 C 1.34775 * 125.64588 * 181.09679 * 13 12 11 15 15 O 1.21575 * 119.99777 * 174.57784 * 14 13 12 16 16 C 1.47649 * 120.00475 * 354.57841 * 14 13 12 17 17 C 1.39799 * 121.07734 * 317.62598 * 16 14 13 18 18 C 1.38165 * 119.36701 * 179.76127 * 17 16 14 19 19 N 1.31839 * 121.55339 * 0.50650 * 18 17 16 20 20 C 1.31993 * 121.97553 * 359.74734 * 19 18 17 21 21 N 1.38269 * 133.69918 * 180.02562 * 20 19 18 22 22 H 0.96999 * 126.38713 * 0.03236 * 21 20 19 23 23 C 1.36385 * 107.22727 * 180.02562 * 21 20 19 24 24 O 1.35182 * 125.05686 * 180.02562 * 23 21 20 25 25 N 1.30994 * 109.88569 * 359.97438 * 23 21 20 26 26 C 1.34639 * 109.66585 * 0.02562 * 25 23 21 27 27 C 1.47430 * 108.70118 * 1.06006 * 13 12 11 28 28 H 0.96995 * 120.00568 * 359.97438 * 1 2 3 29 29 H 0.96707 * 114.00096 * 59.29687 * 10 9 7 30 30 H 1.09000 * 110.71685 * 324.74687 * 11 9 7 31 31 H 1.09002 * 110.71368 * 88.01846 * 11 9 7 32 32 H 1.09003 * 109.87835 * 262.76369 * 12 11 9 33 33 H 1.08996 * 110.00647 * 141.67974 * 12 11 9 34 34 H 1.08001 * 120.31500 * 359.96874 * 17 16 14 35 35 H 1.08003 * 119.22587 * 180.23123 * 18 17 16 36 36 H 0.96699 * 113.99492 * 269.98498 * 24 23 21 37 37 H 1.09005 * 110.35965 * 217.03353 * 27 13 12 38 38 H 1.08994 * 110.36401 * 94.71131 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3918 2.1070 -1.3948 5 1 1.5029 2.6202 0.8022 6 1 3.5952 1.4122 0.5925 7 6 2.0045 -1.1940 0.0005 8 1 3.0803 -1.1965 0.0975 9 6 1.2572 -2.4957 -0.1342 10 8 0.4082 -2.7149 0.9942 11 6 2.2376 -3.6821 -0.3313 12 6 1.3823 -4.7115 -1.1018 13 7 0.2944 -3.9716 -1.7581 14 6 -0.6818 -4.5150 -2.5119 15 8 -1.5885 -3.8190 -2.9261 16 6 -0.6503 -5.9554 -2.8346 17 6 0.5422 -6.5873 -3.1993 18 6 0.5321 -7.9381 -3.4892 19 7 -0.5790 -8.6460 -3.4399 20 6 -1.7371 -8.1069 -3.1075 21 7 -3.0208 -8.6045 -2.9797 22 1 -3.3001 -9.5213 -3.1289 23 6 -3.8211 -7.5658 -2.6044 24 8 -5.1509 -7.6528 -2.3775 25 7 -3.1092 -6.4716 -2.4954 26 6 -1.8227 -6.7367 -2.7911 27 6 0.4479 -2.5371 -1.4544 28 1 -0.4851 0.8400 0.0004 29 1 -0.2540 -2.0230 1.1284 30 1 3.0994 -3.3757 -0.9242 31 1 2.5536 -4.0850 0.6309 32 1 0.9675 -5.4424 -0.4076 33 1 1.9918 -5.2165 -1.8510 34 1 1.4632 -6.0256 -3.2506 35 1 1.4554 -8.4248 -3.7670 36 1 -5.6948 -7.4920 -3.1607 37 1 -0.5283 -2.0723 -1.3158 38 1 0.9973 -2.0372 -2.2521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434123979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:03 Heat of formation + Delta-G solvation = -48.599654 kcal Electronic energy + Delta-G solvation = -26617.428349 eV Core-core repulsion = 22653.601841 eV Total energy + Delta-G solvation = -3963.826508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.59261 -41.16337 -39.80188 -38.84004 -37.99829 -36.09412 -34.89180 -34.23239 -32.83531 -31.60142 -30.45230 -29.55934 -27.37298 -25.65841 -24.37347 -24.00766 -23.06060 -21.49312 -21.09301 -20.11838 -19.42664 -19.01343 -18.48229 -18.15547 -17.23334 -17.14403 -16.89690 -16.50879 -16.26622 -15.75575 -15.68142 -15.35770 -14.95997 -14.75805 -14.63998 -13.92682 -13.67003 -13.51726 -13.43632 -13.28790 -13.19455 -12.85087 -12.50492 -12.38373 -12.32076 -12.20835 -12.09088 -11.94287 -11.33857 -11.16425 -10.66077 -10.39436 -10.27968 -10.08149 -9.60531 -9.46970 -8.23778 -6.41124 -0.74088 0.00722 0.97299 1.35346 1.43265 1.45683 1.55850 1.66379 1.99379 2.39898 2.48182 2.66872 3.02810 3.11695 3.49033 3.53450 3.72655 3.80201 3.96472 4.12047 4.19197 4.23378 4.42489 4.52399 4.69233 4.72232 4.77023 4.95722 5.06013 5.11242 5.30530 5.39839 5.43388 5.49814 5.70829 5.76815 6.07734 6.45414 6.48063 6.56544 6.69412 6.71272 7.06587 7.27446 7.36993 8.81670 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.003525 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.308590 B = 7940.856382 C = 8647.206559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.228 3.772 10 O -0.592 6.592 11 C -0.110 4.110 12 C 0.101 3.899 13 N -0.605 5.605 14 C 0.559 3.441 15 O -0.578 6.578 16 C -0.050 4.050 17 C -0.130 4.130 18 C 0.153 3.847 19 N -0.468 5.468 20 C 0.244 3.756 21 N -0.566 5.566 22 H 0.447 0.553 23 C 0.482 3.518 24 O -0.433 6.433 25 N -0.525 5.525 26 C 0.026 3.974 27 C 0.109 3.891 28 H 0.268 0.732 29 H 0.373 0.627 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.182 0.818 35 H 0.230 0.770 36 H 0.438 0.562 37 H 0.039 0.961 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -20.204 -8.733 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.188 3.812 10 O -0.400 6.400 11 C -0.148 4.148 12 C -0.020 4.020 13 N -0.337 5.337 14 C 0.348 3.652 15 O -0.458 6.458 16 C -0.063 4.063 17 C -0.152 4.152 18 C -0.013 4.013 19 N -0.182 5.182 20 C 0.007 3.993 21 N -0.196 5.196 22 H 0.291 0.709 23 C 0.176 3.824 24 O -0.239 6.239 25 N -0.257 5.257 26 C -0.097 4.097 27 C -0.014 4.014 28 H 0.077 0.923 29 H 0.221 0.779 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.199 0.801 35 H 0.247 0.753 36 H 0.302 0.698 37 H 0.058 0.942 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.005 -20.487 -8.300 22.105 hybrid contribution -1.020 1.847 -0.370 2.142 sum -1.026 -18.640 -8.670 20.583 Atomic orbital electron populations 1.69853 1.07435 1.28389 1.49988 1.25871 0.95611 1.03008 0.93102 0.85439 0.78922 0.78636 0.78022 1.20213 1.21351 1.18544 1.21815 0.94567 0.91072 1.51814 0.90783 1.19964 0.86702 0.93459 0.81094 1.86096 1.50964 1.52199 1.50744 1.22679 0.97396 0.93962 1.00763 1.22443 0.87939 0.94820 0.96803 1.48687 1.27082 1.09732 1.48159 1.18226 0.80664 0.87589 0.78710 1.90757 1.35743 1.63869 1.55438 1.19612 0.93117 0.91822 1.01787 1.22691 0.96901 0.97067 0.98565 1.23402 0.95489 0.89555 0.92824 1.66374 0.96271 1.40309 1.15246 1.18597 0.87607 0.89572 1.03553 1.42863 1.04909 1.13620 1.58177 0.70863 1.20260 0.85969 0.81676 0.94472 1.84800 1.07595 1.91392 1.40097 1.70415 1.03990 1.26183 1.25107 1.19269 0.91694 0.93678 1.05107 1.22842 1.00205 0.79080 0.99256 0.92259 0.77880 0.88062 0.89720 0.91941 0.86914 0.80087 0.75349 0.69753 0.94198 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.32 10.71 21.45 0.23 -51.09 16 2 C 0.03 1.31 5.24 84.65 0.44 1.76 16 3 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -28.61 8.28 25.60 0.21 -28.40 16 8 H 0.07 3.64 7.80 -2.91 -0.02 3.61 16 9 C 0.23 11.09 0.88 -10.15 -0.01 11.08 16 10 O -0.59 -31.61 13.18 -148.98 -1.96 -33.57 16 11 C -0.11 -4.02 6.14 31.82 0.20 -3.82 16 12 C 0.10 3.24 5.89 86.76 0.51 3.76 16 13 N -0.60 -25.52 3.33 -815.21 -2.71 -28.23 16 14 C 0.56 24.62 7.48 86.73 0.65 25.27 16 15 O -0.58 -31.18 17.21 -3.95 -0.07 -31.25 16 16 C -0.05 -1.70 5.47 -19.75 -0.11 -1.81 16 17 C -0.13 -2.77 8.56 22.63 0.19 -2.58 16 18 C 0.15 2.42 11.14 84.67 0.94 3.36 16 19 N -0.47 -9.90 10.35 -192.67 -1.99 -11.90 16 20 C 0.24 6.26 8.46 133.87 1.13 7.39 16 21 N -0.57 -11.08 6.26 -307.03 -1.92 -13.00 16 22 H 0.45 4.90 8.96 -92.71 -0.83 4.07 16 23 C 0.48 11.95 9.39 179.69 1.69 13.64 16 24 O -0.43 -7.41 13.62 -84.62 -1.15 -8.56 16 25 N -0.53 -19.12 11.26 -305.86 -3.44 -22.57 16 26 C 0.03 0.87 6.90 40.03 0.28 1.15 16 27 C 0.11 5.45 5.40 86.85 0.47 5.92 16 28 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.37 21.09 7.50 -74.05 -0.56 20.54 16 30 H 0.10 3.23 8.03 -2.39 -0.02 3.21 16 31 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 33 H 0.11 2.42 5.65 -2.39 -0.01 2.40 16 34 H 0.18 2.78 5.98 -2.91 -0.02 2.76 16 35 H 0.23 1.08 8.06 -2.91 -0.02 1.05 16 36 H 0.44 2.29 9.06 -74.06 -0.67 1.62 16 37 H 0.04 2.35 7.30 -2.38 -0.02 2.34 16 38 H 0.05 2.70 8.03 -2.39 -0.02 2.68 16 Total: -1.00 -84.47 326.97 -5.28 -89.75 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.88 Total: 29.88 kcal Atomic # 6 Polarization: 30.12 SS G_CDS: 6.60 Total: 36.72 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -9.84 Total: -126.78 kcal Atomic # 8 Polarization: -70.20 SS G_CDS: -3.18 Total: -73.38 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -84.47 -5.28 -89.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434123979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.153 kcal (2) G-P(sol) polarization free energy of solvation -84.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds