Wall clock time and date at job start Tue Mar 31 2020 11:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34642 * 116.99959 * 2 1 4 4 O 1.21412 * 120.00593 * 0.02562 * 3 2 1 5 5 C 1.48241 * 120.00022 * 180.02562 * 3 2 1 6 6 C 1.42298 * 126.94414 * 179.71205 * 5 3 2 7 7 C 1.35318 * 103.91961 * 179.85511 * 6 5 3 8 8 C 1.50698 * 126.66031 * 180.10703 * 7 6 5 9 9 N 1.46499 * 109.47199 * 90.32896 * 8 7 6 10 10 C 1.39676 * 120.00328 * 180.02562 * 9 8 7 11 11 C 1.39005 * 120.03472 * 359.71713 * 10 9 8 12 12 C 1.38157 * 120.05765 * 179.70253 * 11 10 9 13 13 C 1.38174 * 120.14200 * 0.60130 * 12 11 10 14 14 C 1.38915 * 120.08010 * 359.67932 * 13 12 11 15 15 O 1.35741 * 120.03219 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00418 * 174.48262 * 15 14 13 17 17 H 1.08004 * 119.99552 * 5.05712 * 16 15 14 18 18 C 1.38653 * 120.00728 * 185.05650 * 16 15 14 19 19 N 1.31560 * 119.99667 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00532 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46804 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47031 * 119.99715 * 20 18 16 23 23 H 1.48502 * 109.47273 * 240.00274 * 20 18 16 24 24 C 1.38745 * 120.04088 * 179.97438 * 10 9 8 25 25 O 1.34013 * 106.67404 * 0.40073 * 7 6 5 26 26 N 1.20908 * 111.85811 * 359.72389 * 25 7 6 27 27 H 1.09000 * 109.47138 * 59.99729 * 1 2 3 28 28 H 1.09004 * 109.47724 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47214 * 300.00209 * 1 2 3 30 30 H 1.08002 * 128.04184 * 359.97438 * 6 5 3 31 31 H 1.09001 * 109.47221 * 210.32640 * 8 7 6 32 32 H 1.09000 * 109.47312 * 330.32817 * 8 7 6 33 33 H 0.97004 * 120.00181 * 359.97438 * 9 8 7 34 34 H 1.08001 * 119.97402 * 359.97438 * 11 10 9 35 35 H 1.08000 * 119.92812 * 180.27470 * 12 11 10 36 36 H 1.07998 * 119.95949 * 179.69543 * 13 12 11 37 37 H 0.96995 * 120.00233 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.07439 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4021 2.2180 0.0005 5 6 3.5436 1.2773 -0.0006 6 6 4.3382 2.4577 -0.0064 7 6 5.6095 1.9944 -0.0010 8 6 6.8688 2.8222 -0.0014 9 7 7.2777 3.0899 1.3796 10 6 8.4251 3.8446 1.6345 11 6 9.1829 4.3369 0.5783 12 6 10.3145 5.0886 0.8299 13 6 10.7034 5.3428 2.1312 14 6 9.9537 4.8488 3.1911 15 8 10.3364 5.0996 4.4691 16 6 9.5052 4.6902 5.4486 17 1 8.6236 4.1162 5.2039 18 6 9.7820 5.0060 6.7700 19 7 10.8556 5.7056 7.0680 20 14 8.6301 4.4395 8.1269 21 1 7.5037 3.6753 7.5330 22 1 9.3719 3.5701 9.0750 23 1 8.0990 5.6221 8.8513 24 6 8.8127 4.0991 2.9422 25 8 5.5313 0.6566 -0.0018 26 7 4.3847 0.2728 -0.0015 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0042 3.4848 -0.0116 31 1 7.6610 2.2782 -0.5158 32 1 6.6834 3.7656 -0.5148 33 1 6.7512 2.7438 2.1172 34 1 8.8844 4.1354 -0.4399 35 1 10.8992 5.4738 0.0077 36 1 11.5912 5.9266 2.3244 37 1 11.0495 5.9263 7.9924 38 1 8.2278 3.7146 3.7646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474430950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:26 Heat of formation + Delta-G solvation = -7.673204 kcal Electronic energy + Delta-G solvation = -24648.168658 eV Core-core repulsion = 20653.824103 eV Total energy + Delta-G solvation = -3994.344555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.60864 -40.78813 -39.13294 -37.27858 -37.05032 -35.30415 -34.50619 -32.60540 -32.12693 -29.46640 -28.60757 -28.38426 -26.10374 -25.27296 -25.23654 -23.25390 -21.85551 -21.10766 -20.59995 -18.44595 -18.34568 -17.88106 -17.78147 -17.17870 -16.93997 -16.78485 -15.77126 -15.14454 -14.82540 -14.77067 -14.41866 -14.19113 -14.04555 -13.85079 -13.76835 -13.52055 -13.04701 -12.80313 -12.68600 -12.33346 -12.10332 -11.65652 -11.46743 -11.37712 -11.35191 -11.05061 -11.00317 -10.87218 -10.67514 -10.41131 -10.08117 -9.55966 -9.40483 -8.78985 -7.41544 -6.90311 -6.43149 -4.02418 0.45488 1.02033 1.87221 2.32130 2.36336 2.44435 2.49652 3.13325 3.14489 3.19637 3.43500 3.68938 3.98062 4.03152 4.40151 4.58814 4.62673 4.67612 4.70452 4.70948 5.05018 5.12473 5.20311 5.30380 5.33841 5.39391 5.62251 5.67979 5.89899 6.21783 6.28402 6.51222 6.57991 6.94257 7.02841 7.11837 7.33053 7.42407 7.51925 7.57707 7.86075 8.01068 8.06198 9.03056 9.74533 10.75070 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002673 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.995389 B =10473.401525 C =12184.865983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.554 3.446 4 O -0.484 6.484 5 C -0.022 4.022 6 C -0.157 4.157 7 C -0.036 4.036 8 C 0.214 3.786 9 N -0.754 5.754 10 C 0.248 3.752 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.232 4.232 14 C 0.189 3.811 15 O -0.177 6.177 16 C -0.389 4.389 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.297 4.297 25 O 0.145 5.855 26 N -0.301 5.301 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.189 0.811 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.399 0.601 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.269 0.731 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.241 -8.887 -15.692 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.395 3.605 4 O -0.369 6.369 5 C -0.177 4.177 6 C -0.180 4.180 7 C -0.099 4.099 8 C 0.089 3.911 9 N -0.389 5.389 10 C 0.148 3.852 11 C -0.302 4.302 12 C -0.059 4.059 13 C -0.253 4.253 14 C 0.134 3.866 15 O -0.080 6.080 16 C -0.465 4.465 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.321 4.321 25 O 0.061 5.939 26 N 0.003 4.997 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.206 0.794 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.468 -9.734 -15.577 24.014 hybrid contribution -1.272 0.342 1.000 1.654 sum -16.740 -9.392 -14.577 24.103 Atomic orbital electron populations 1.23422 0.74892 1.04397 1.03051 1.86606 1.24225 1.31413 1.83605 1.19470 0.85839 0.82109 0.73079 1.90892 1.65191 1.35967 1.44826 1.22271 0.93070 0.91122 1.11284 1.22519 0.90114 1.00642 1.04675 1.24598 0.98234 0.83110 1.03954 1.19588 0.88618 0.96126 0.86813 1.44407 1.28810 1.60825 1.04850 1.17358 0.85100 0.89496 0.93263 1.20067 1.01439 1.12456 0.96264 1.20384 0.94877 0.95408 0.95191 1.20080 1.04069 1.10281 0.90822 1.19070 0.90870 0.90585 0.86077 1.83987 1.44184 1.69714 1.10069 1.21344 1.05888 1.34587 0.84714 0.89099 1.25275 0.97334 0.96473 0.97463 1.70046 1.24615 1.35661 1.19473 0.85670 0.79276 0.78500 0.80095 1.19221 1.20179 1.20172 1.20500 1.03675 1.13184 0.94724 1.84883 1.22147 1.22233 1.64599 1.74381 0.89549 1.22797 1.12941 0.91373 0.87406 0.91322 0.79365 0.89544 0.88572 0.76678 0.87656 0.87030 0.86811 0.92116 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.34 -3.52 10.57 -40.34 -0.43 -3.95 16 3 C 0.55 6.39 7.99 34.84 0.28 6.67 16 4 O -0.48 -6.25 16.74 -19.20 -0.32 -6.57 16 5 C -0.02 -0.24 7.24 -82.54 -0.60 -0.84 16 6 C -0.16 -1.50 10.92 -39.06 -0.43 -1.93 16 7 C -0.04 -0.34 6.84 -35.35 -0.24 -0.58 16 8 C 0.21 1.98 5.47 -5.20 -0.03 1.95 16 9 N -0.75 -9.79 5.72 -59.83 -0.34 -10.13 16 10 C 0.25 4.21 6.65 -83.81 -0.56 3.65 16 11 C -0.28 -4.44 9.31 -39.33 -0.37 -4.81 16 12 C -0.04 -0.68 10.03 -39.63 -0.40 -1.07 16 13 C -0.23 -4.81 9.99 -39.35 -0.39 -5.20 16 14 C 0.19 4.49 6.64 -39.13 -0.26 4.23 16 15 O -0.18 -5.00 9.76 0.08 0.00 -5.00 16 16 C -0.39 -10.79 9.49 30.89 0.29 -10.49 16 17 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 19 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 20 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.30 -6.24 9.01 -39.20 -0.35 -6.59 16 25 O 0.14 1.55 11.18 17.25 0.19 1.74 16 26 N -0.30 -3.57 12.12 33.29 0.40 -3.17 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.10 0.76 7.96 -51.93 -0.41 0.34 16 33 H 0.40 5.06 8.47 -40.82 -0.35 4.71 16 34 H 0.11 1.33 6.73 -52.49 -0.35 0.98 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.13 2.67 5.63 -52.49 -0.30 2.37 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -32.82 345.10 -5.40 -38.22 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.76 Total: 5.40 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.08 Total: -12.76 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.82 Total: -37.79 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.55 Total: -13.78 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.82 -5.40 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474430950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.551 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds