Wall clock time and date at job start Tue Mar 31 2020 11:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34642 * 116.99959 * 2 1 4 4 O 1.21412 * 120.00593 * 0.02562 * 3 2 1 5 5 C 1.48241 * 120.00022 * 180.02562 * 3 2 1 6 6 C 1.42298 * 126.94414 * 179.71205 * 5 3 2 7 7 C 1.35318 * 103.91961 * 179.85511 * 6 5 3 8 8 C 1.50698 * 126.66031 * 180.10703 * 7 6 5 9 9 N 1.46499 * 109.47199 * 90.32896 * 8 7 6 10 10 C 1.39676 * 120.00328 * 180.02562 * 9 8 7 11 11 C 1.39005 * 120.03472 * 359.71713 * 10 9 8 12 12 C 1.38157 * 120.05765 * 179.70253 * 11 10 9 13 13 C 1.38174 * 120.14200 * 0.60130 * 12 11 10 14 14 C 1.38915 * 120.08010 * 359.67932 * 13 12 11 15 15 O 1.35741 * 120.03219 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00418 * 174.48262 * 15 14 13 17 17 H 1.08004 * 119.99552 * 5.05712 * 16 15 14 18 18 C 1.38653 * 120.00728 * 185.05650 * 16 15 14 19 19 N 1.31560 * 119.99667 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00532 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46804 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47031 * 119.99715 * 20 18 16 23 23 H 1.48502 * 109.47273 * 240.00274 * 20 18 16 24 24 C 1.38745 * 120.04088 * 179.97438 * 10 9 8 25 25 O 1.34013 * 106.67404 * 0.40073 * 7 6 5 26 26 N 1.20908 * 111.85811 * 359.72389 * 25 7 6 27 27 H 1.09000 * 109.47138 * 59.99729 * 1 2 3 28 28 H 1.09004 * 109.47724 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47214 * 300.00209 * 1 2 3 30 30 H 1.08002 * 128.04184 * 359.97438 * 6 5 3 31 31 H 1.09001 * 109.47221 * 210.32640 * 8 7 6 32 32 H 1.09000 * 109.47312 * 330.32817 * 8 7 6 33 33 H 0.97004 * 120.00181 * 359.97438 * 9 8 7 34 34 H 1.08001 * 119.97402 * 359.97438 * 11 10 9 35 35 H 1.08000 * 119.92812 * 180.27470 * 12 11 10 36 36 H 1.07998 * 119.95949 * 179.69543 * 13 12 11 37 37 H 0.96995 * 120.00233 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.07439 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4021 2.2180 0.0005 5 6 3.5436 1.2773 -0.0006 6 6 4.3382 2.4577 -0.0064 7 6 5.6095 1.9944 -0.0010 8 6 6.8688 2.8222 -0.0014 9 7 7.2777 3.0899 1.3796 10 6 8.4251 3.8446 1.6345 11 6 9.1829 4.3369 0.5783 12 6 10.3145 5.0886 0.8299 13 6 10.7034 5.3428 2.1312 14 6 9.9537 4.8488 3.1911 15 8 10.3364 5.0996 4.4691 16 6 9.5052 4.6902 5.4486 17 1 8.6236 4.1162 5.2039 18 6 9.7820 5.0060 6.7700 19 7 10.8556 5.7056 7.0680 20 14 8.6301 4.4395 8.1269 21 1 7.5037 3.6753 7.5330 22 1 9.3719 3.5701 9.0750 23 1 8.0990 5.6221 8.8513 24 6 8.8127 4.0991 2.9422 25 8 5.5313 0.6566 -0.0018 26 7 4.3847 0.2728 -0.0015 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0042 3.4848 -0.0116 31 1 7.6610 2.2782 -0.5158 32 1 6.6834 3.7656 -0.5148 33 1 6.7512 2.7438 2.1172 34 1 8.8844 4.1354 -0.4399 35 1 10.8992 5.4738 0.0077 36 1 11.5912 5.9266 2.3244 37 1 11.0495 5.9263 7.9924 38 1 8.2278 3.7146 3.7646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474430950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:25 Heat of formation + Delta-G solvation = -29.754918 kcal Electronic energy + Delta-G solvation = -24649.126193 eV Core-core repulsion = 20653.824103 eV Total energy + Delta-G solvation = -3995.302090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.43612 -41.60148 -40.72334 -38.78721 -37.86451 -36.53466 -35.35344 -34.23838 -33.48143 -30.85984 -29.83980 -29.21289 -27.34640 -26.98056 -26.01189 -24.08564 -23.37090 -22.32573 -21.68451 -19.87278 -19.39057 -18.98889 -18.72075 -18.60812 -17.72744 -17.55701 -17.07596 -16.69758 -16.20067 -15.82726 -15.65669 -15.55143 -15.31748 -14.96436 -14.75526 -14.54957 -14.40464 -14.10325 -13.76204 -13.46877 -13.27434 -13.09580 -12.83636 -12.50720 -12.43827 -12.23052 -12.16015 -12.03531 -12.03011 -11.86042 -11.27793 -10.97085 -10.87930 -10.60227 -9.05394 -8.43420 -8.24411 -6.10930 -0.37843 0.24843 0.82017 0.96268 1.14945 1.35203 1.44347 1.52387 1.52770 1.69681 2.19321 2.62239 2.66265 2.92488 3.27142 3.32128 3.62402 3.64726 3.88466 3.95693 4.15677 4.23076 4.26210 4.45357 4.54964 4.60604 4.61182 4.66413 4.71043 4.79895 4.93822 5.06531 5.18452 5.19913 5.48102 5.79902 5.86986 6.03952 6.14839 6.22377 6.57862 6.73254 6.75056 7.02553 7.87280 8.80522 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002673 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.995389 B =10473.401525 C =12184.865983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.553 3.447 4 O -0.504 6.504 5 C -0.038 4.038 6 C -0.150 4.150 7 C -0.028 4.028 8 C 0.211 3.789 9 N -0.747 5.747 10 C 0.259 3.741 11 C -0.256 4.256 12 C -0.026 4.026 13 C -0.260 4.260 14 C 0.149 3.851 15 O -0.234 6.234 16 C -0.406 4.406 17 H 0.099 0.901 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.016 2.984 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.314 4.314 25 O 0.146 5.854 26 N -0.319 5.319 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.069 0.931 30 H 0.205 0.795 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.400 0.600 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.103 0.897 37 H 0.271 0.729 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.188 -9.998 -18.585 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.396 3.604 4 O -0.391 6.391 5 C -0.193 4.193 6 C -0.173 4.173 7 C -0.091 4.091 8 C 0.088 3.912 9 N -0.380 5.380 10 C 0.157 3.843 11 C -0.279 4.279 12 C -0.045 4.045 13 C -0.281 4.281 14 C 0.098 3.902 15 O -0.141 6.141 16 C -0.482 4.482 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.836 3.164 21 H -0.177 1.177 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.338 4.338 25 O 0.062 5.938 26 N -0.013 5.013 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.222 0.778 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.234 0.766 34 H 0.175 0.825 35 H 0.172 0.828 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.477 -10.897 -18.551 27.719 hybrid contribution -0.782 0.580 1.490 1.780 sum -18.259 -10.317 -17.061 27.035 Atomic orbital electron populations 1.23761 0.72874 1.06468 1.03404 1.86600 1.26302 1.30849 1.83133 1.19579 0.86047 0.82207 0.72575 1.90874 1.65643 1.36551 1.46032 1.22474 0.93183 0.91806 1.11827 1.22761 0.89898 1.00940 1.03706 1.24583 0.98217 0.82554 1.03754 1.19927 0.89059 0.97690 0.84563 1.44523 1.27217 1.59256 1.06970 1.17377 0.86094 0.88949 0.91912 1.20656 0.99625 1.09417 0.98164 1.20876 0.95182 0.94061 0.94365 1.20311 1.04221 1.11451 0.92070 1.19673 0.92885 0.92327 0.85355 1.83946 1.45871 1.72403 1.11861 1.21795 1.06268 1.34734 0.85434 0.88334 1.26533 0.99164 0.96592 0.99912 1.70192 1.27296 1.38521 1.20093 0.84562 0.77182 0.78274 0.76387 1.17697 1.19434 1.19425 1.20514 1.03127 1.13628 0.96517 1.84864 1.21699 1.22992 1.64282 1.74383 0.89978 1.23362 1.13609 0.90815 0.84548 0.91209 0.77765 0.87370 0.85729 0.76589 0.82542 0.82801 0.87844 0.91986 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -6.85 10.57 -55.51 -0.59 -7.44 16 3 C 0.55 12.15 7.99 70.48 0.56 12.72 16 4 O -0.50 -12.49 16.74 20.12 0.34 -12.15 16 5 C -0.04 -0.79 7.24 42.94 0.31 -0.48 16 6 C -0.15 -2.44 10.92 22.61 0.25 -2.19 16 7 C -0.03 -0.42 6.84 25.01 0.17 -0.25 16 8 C 0.21 2.78 5.47 85.63 0.47 3.25 16 9 N -0.75 -16.56 5.72 -343.20 -1.96 -18.52 16 10 C 0.26 8.04 6.65 38.20 0.25 8.29 16 11 C -0.26 -6.82 9.31 22.43 0.21 -6.61 16 12 C -0.03 -0.80 10.03 22.24 0.22 -0.58 16 13 C -0.26 -10.87 9.99 22.42 0.22 -10.65 16 14 C 0.15 7.36 6.64 22.56 0.15 7.51 16 15 O -0.23 -14.22 9.76 -22.62 -0.22 -14.44 16 16 C -0.41 -23.82 9.49 67.92 0.64 -23.18 16 17 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 18 C -0.03 -1.44 5.49 84.83 0.47 -0.97 16 19 N -0.92 -57.21 13.67 21.61 0.30 -56.92 16 20 Si 1.02 43.50 29.55 68.60 2.03 45.53 16 21 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 C -0.31 -13.27 9.01 22.52 0.20 -13.07 16 25 O 0.15 2.74 11.18 71.91 0.80 3.54 16 26 N -0.32 -6.98 12.12 -49.52 -0.60 -7.58 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.21 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.11 1.10 7.94 -2.39 -0.02 1.08 16 32 H 0.13 1.10 7.96 -2.39 -0.02 1.08 16 33 H 0.40 9.06 8.47 -92.71 -0.79 8.27 16 34 H 0.16 2.66 6.73 -2.91 -0.02 2.65 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.11 4.87 5.63 -2.91 -0.02 4.85 16 Total: -1.00 -78.25 345.10 5.77 -72.48 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.35 Total: 20.21 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 5.33 Total: -24.71 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -2.27 Total: -83.02 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: 0.33 Total: -30.49 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -78.25 5.77 -72.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474430950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.726 kcal (2) G-P(sol) polarization free energy of solvation -78.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds