Wall clock time and date at job start Tue Mar 31 2020 11:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00069 * 2 1 4 4 H 1.48502 * 109.47095 * 239.99735 * 3 2 1 5 5 H 1.48499 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47338 * 119.99746 * 3 2 1 7 7 C 1.37884 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99957 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.64045 * 298.31147 * 9 7 2 11 11 C 1.55149 * 110.87183 * 175.06254 * 9 7 2 12 12 C 1.55131 * 101.48561 * 205.89820 * 11 9 7 13 13 N 1.47430 * 104.72310 * 37.29268 * 12 11 9 14 14 C 1.34773 * 125.64708 * 155.81737 * 13 12 11 15 15 O 1.21585 * 119.99641 * 179.69309 * 14 13 12 16 16 N 1.34777 * 120.00280 * 359.69509 * 14 13 12 17 17 C 1.39450 * 119.99864 * 185.63495 * 16 14 13 18 18 C 1.36491 * 120.69121 * 24.83135 * 17 16 14 19 19 C 1.39697 * 121.76270 * 180.02562 * 18 17 16 20 20 C 1.35563 * 122.70686 * 359.97245 * 19 18 17 21 21 C 1.40684 * 120.08495 * 0.04398 * 20 19 18 22 22 N 1.31066 * 138.75552 * 179.97438 * 21 20 19 23 23 O 1.21497 * 109.06819 * 179.97438 * 22 21 20 24 24 N 1.21515 * 116.26961 * 359.97438 * 23 22 21 25 25 C 1.30653 * 109.09865 * 0.02562 * 24 23 22 26 26 C 1.47023 * 108.69946 * 335.55585 * 13 12 11 27 27 H 0.96991 * 119.99899 * 0.02562 * 1 2 3 28 28 H 0.96704 * 114.00307 * 61.68485 * 10 9 7 29 29 H 1.09001 * 111.00735 * 324.13470 * 11 9 7 30 30 H 1.08995 * 111.00558 * 87.99095 * 11 9 7 31 31 H 1.09004 * 110.49380 * 278.45506 * 12 11 9 32 32 H 1.09002 * 110.34600 * 156.05889 * 12 11 9 33 33 H 0.97002 * 119.99483 * 5.63798 * 16 14 13 34 34 H 1.08000 * 119.11669 * 359.97438 * 18 17 16 35 35 H 1.08002 * 118.65050 * 179.97438 * 19 18 17 36 36 H 1.08005 * 119.95701 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.88126 * 120.70418 * 26 13 12 38 38 H 1.09002 * 109.88131 * 241.70882 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4495 -2.6181 1.1776 11 6 2.2255 -3.7001 -0.1236 12 6 1.3110 -4.7747 -0.7681 13 7 0.4618 -4.0263 -1.7128 14 6 -0.1446 -4.5406 -2.8010 15 8 -0.8292 -3.8279 -3.5092 16 7 0.0078 -5.8450 -3.1041 17 6 -0.5211 -6.3514 -4.2909 18 6 -0.7353 -5.5341 -5.3628 19 6 -1.2644 -6.0174 -6.5620 20 6 -1.5982 -7.3186 -6.7435 21 6 -1.4174 -8.2452 -5.7005 22 7 -1.6014 -9.5231 -5.4747 23 8 -1.2489 -9.7806 -4.3408 24 7 -0.8213 -8.8503 -3.6862 25 6 -0.8564 -7.7648 -4.4124 26 6 0.3811 -2.6274 -1.2676 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2286 -1.9339 1.2624 29 1 3.0655 -3.4561 -0.7740 30 1 2.5740 -4.0235 0.8572 31 1 0.6975 -5.2592 -0.0085 32 1 1.9108 -5.5131 -1.3002 33 1 0.4853 -6.4315 -2.4966 34 1 -0.4899 -4.4855 -5.2814 35 1 -1.4136 -5.3259 -7.3781 36 1 -2.0039 -7.6443 -7.6900 37 1 0.7625 -1.9678 -2.0471 38 1 -0.6531 -2.3705 -1.0382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476477006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:52 Heat of formation + Delta-G solvation = 57.825186 kcal Electronic energy + Delta-G solvation = -26302.915643 eV Core-core repulsion = 22343.704062 eV Total energy + Delta-G solvation = -3959.211581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.72949 -41.94799 -39.96201 -38.85123 -36.43569 -36.19988 -35.39473 -34.23799 -34.20822 -32.08571 -30.58817 -29.55620 -27.26187 -26.48762 -25.92493 -24.56270 -22.46352 -21.57501 -21.46327 -20.04242 -19.97709 -19.68210 -19.10005 -18.62582 -17.84916 -17.35781 -16.87333 -16.71893 -16.25294 -16.03915 -15.48854 -15.08820 -14.81423 -14.75767 -14.27491 -14.09210 -13.88613 -13.56010 -13.51149 -13.36037 -13.06134 -12.94529 -12.82432 -12.72340 -12.54031 -12.37819 -12.31698 -12.12480 -11.69636 -11.31714 -11.19323 -10.80874 -10.65640 -10.32302 -9.75211 -8.94932 -8.26693 -6.42382 -1.02747 0.06262 0.72739 1.17689 1.44179 1.45179 1.52526 1.81389 1.91125 2.29556 2.37536 2.38358 2.57082 2.85096 3.00241 3.43917 3.72574 3.75267 3.97706 4.04022 4.08889 4.18572 4.31373 4.38711 4.51301 4.66263 4.70331 4.96663 5.00729 5.07726 5.11300 5.17923 5.28861 5.32849 5.45495 5.59883 5.73273 5.79733 6.06285 6.62066 6.71296 7.18867 7.26615 7.33234 7.34709 8.79175 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.003036 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.038494 B = 9220.202192 C = 9903.062359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.588 6.588 11 C -0.109 4.109 12 C 0.100 3.900 13 N -0.624 5.624 14 C 0.714 3.286 15 O -0.603 6.603 16 N -0.663 5.663 17 C 0.207 3.793 18 C -0.131 4.131 19 C -0.035 4.035 20 C -0.105 4.105 21 C 0.044 3.956 22 N -0.358 5.358 23 O 0.372 5.628 24 N -0.346 5.346 25 C -0.012 4.012 26 C 0.141 3.859 27 H 0.270 0.730 28 H 0.376 0.624 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.420 0.580 34 H 0.152 0.848 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.040 0.960 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 -14.206 -11.072 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.396 6.396 11 C -0.147 4.147 12 C -0.022 4.022 13 N -0.359 5.359 14 C 0.417 3.583 15 O -0.483 6.483 16 N -0.309 5.309 17 C 0.107 3.893 18 C -0.157 4.157 19 C -0.057 4.057 20 C -0.126 4.126 21 C -0.109 4.109 22 N -0.084 5.084 23 O 0.137 5.863 24 N -0.066 5.066 25 C -0.167 4.167 26 C 0.018 3.982 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.258 0.742 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.195 0.805 37 H 0.059 0.941 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.005 -15.166 -10.948 18.704 hybrid contribution 0.009 2.181 0.292 2.200 sum 0.015 -12.985 -10.656 16.797 Atomic orbital electron populations 1.69783 1.07036 1.28582 1.49910 1.25780 0.95772 1.02696 0.93065 0.85549 0.78362 0.78521 0.78866 1.19646 1.21091 1.19522 1.21782 0.93959 0.91216 1.52633 0.91392 1.19723 0.87056 0.93489 0.80471 1.86108 1.51722 1.56294 1.45442 1.22756 0.96892 0.93470 1.01563 1.22572 0.92627 0.95095 0.91911 1.47963 1.50465 1.12417 1.25085 1.15469 0.80177 0.81567 0.81102 1.90844 1.44805 1.59951 1.52748 1.42318 1.57753 1.08837 1.22008 1.17084 0.99395 0.85994 0.86874 1.21408 1.01209 1.01689 0.91362 1.21093 0.92562 0.95292 0.96761 1.20166 1.04291 0.90386 0.97754 1.23122 1.00929 0.89892 0.96966 1.75236 1.18974 1.15283 0.98892 1.85364 1.52920 1.31886 1.16108 1.75033 1.15738 0.96461 1.19395 1.23749 1.05192 0.94774 0.93030 1.22488 0.99625 0.78104 0.98010 0.92040 0.77504 0.89427 0.89077 0.90776 0.88093 0.74162 0.83095 0.80135 0.80479 0.94104 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.15 10.96 21.45 0.24 -47.91 16 2 C 0.03 1.43 5.28 84.66 0.45 1.87 16 3 Si 0.96 40.73 29.54 68.60 2.03 42.75 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.56 -28.05 8.13 25.60 0.21 -27.84 16 8 H 0.07 3.32 7.78 -2.91 -0.02 3.29 16 9 C 0.23 10.72 0.85 -10.35 -0.01 10.71 16 10 O -0.59 -28.56 13.07 -148.98 -1.95 -30.50 16 11 C -0.11 -3.88 6.24 32.06 0.20 -3.68 16 12 C 0.10 3.04 6.54 86.93 0.57 3.61 16 13 N -0.62 -23.74 3.32 -829.30 -2.76 -26.50 16 14 C 0.71 26.38 8.29 179.06 1.48 27.86 16 15 O -0.60 -25.98 13.87 -3.98 -0.06 -26.03 16 16 N -0.66 -19.07 5.32 -313.67 -1.67 -20.74 16 17 C 0.21 5.61 6.60 39.47 0.26 5.87 16 18 C -0.13 -3.25 8.66 22.21 0.19 -3.06 16 19 C -0.03 -0.57 9.84 22.00 0.22 -0.36 16 20 C -0.10 -1.69 10.03 22.25 0.22 -1.46 16 21 C 0.04 0.98 7.77 42.59 0.33 1.31 16 22 N -0.36 -8.17 12.29 -57.34 -0.70 -8.88 16 23 O 0.37 8.54 11.67 139.26 1.63 10.17 16 24 N -0.35 -8.67 12.27 -55.24 -0.68 -9.35 16 25 C -0.01 -0.31 7.91 44.00 0.35 0.04 16 26 C 0.14 6.60 5.23 86.73 0.45 7.05 16 27 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.38 19.14 7.45 -74.05 -0.55 18.59 16 29 H 0.09 2.95 8.04 -2.39 -0.02 2.94 16 30 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 2.25 7.38 -2.39 -0.02 2.23 16 33 H 0.42 10.10 7.35 -92.71 -0.68 9.42 16 34 H 0.15 4.46 5.71 -2.91 -0.02 4.44 16 35 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.04 2.10 7.81 -2.39 -0.02 2.09 16 38 H 0.03 1.80 7.92 -2.39 -0.02 1.78 16 Total: -1.00 -62.14 325.17 0.91 -61.23 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.08 Total: 33.84 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 4.92 Total: 21.92 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -5.58 Total: -113.37 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.38 Total: -46.37 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -62.14 0.91 -61.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476477006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.056 kcal (2) G-P(sol) polarization free energy of solvation -62.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds