Wall clock time and date at job start Tue Mar 31 2020 12:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38329 * 120.35173 * 2 1 4 4 C 1.37701 * 120.54249 * 180.18805 * 3 2 1 5 5 C 1.39602 * 121.05558 * 359.94509 * 4 3 2 6 6 C 1.38880 * 117.79989 * 359.75311 * 5 4 3 7 7 C 1.38032 * 120.35691 * 180.02562 * 2 1 3 8 8 S 1.77517 * 108.29491 * 180.74982 * 6 5 4 9 9 C 1.83296 * 96.58253 * 15.12781 * 8 6 5 10 10 H 1.09003 * 111.09356 * 93.18140 * 9 8 6 11 11 C 1.50700 * 111.10166 * 217.23076 * 9 8 6 12 12 O 1.20828 * 119.99974 * 85.16857 * 11 9 8 13 13 O 1.34230 * 120.00084 * 265.17411 * 11 9 8 14 14 C 1.45200 * 116.99800 * 182.84793 * 13 11 9 15 15 C 1.50706 * 112.84433 * 294.96114 * 14 13 11 16 16 H 1.08000 * 119.99513 * 113.85198 * 15 14 13 17 17 C 1.37871 * 120.00084 * 293.84735 * 15 14 13 18 18 N 1.31507 * 120.00291 * 6.34914 * 17 15 14 19 19 Si 1.86801 * 119.99962 * 186.34762 * 17 15 14 20 20 H 1.48494 * 109.47461 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47147 * 300.00347 * 19 17 15 22 22 H 1.48500 * 109.47225 * 59.99946 * 19 17 15 23 23 C 1.53773 * 113.69302 * 66.22961 * 14 13 11 24 24 C 1.53782 * 87.07906 * 89.12911 * 23 14 13 25 25 C 1.53776 * 113.61371 * 163.77246 * 14 13 11 26 26 C 1.50874 * 126.82977 * 179.70405 * 5 4 3 27 27 H 1.08998 * 109.47135 * 269.97605 * 1 2 3 28 28 H 1.08997 * 109.47076 * 29.98474 * 1 2 3 29 29 H 1.09003 * 109.46427 * 149.97987 * 1 2 3 30 30 H 1.07993 * 119.72944 * 0.17636 * 3 2 1 31 31 H 1.08004 * 119.47072 * 179.97438 * 4 3 2 32 32 H 1.07996 * 119.92078 * 359.97438 * 7 2 1 33 33 H 0.97002 * 120.00243 * 355.04249 * 18 17 15 34 34 H 1.09004 * 113.61242 * 203.67321 * 23 14 13 35 35 H 1.08993 * 113.61847 * 334.58166 * 23 14 13 36 36 H 1.08996 * 113.61477 * 270.88235 * 24 23 14 37 37 H 1.09001 * 113.69085 * 139.99011 * 24 23 14 38 38 H 1.08994 * 113.61704 * 25.33969 * 25 14 13 39 39 H 1.09003 * 113.61685 * 156.24961 * 25 14 13 40 40 H 1.08999 * 109.28197 * 39.12781 * 26 5 4 41 41 H 1.09003 * 109.28050 * 279.68587 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1937 0.0000 4 6 3.5829 1.1983 -0.0039 5 6 4.3071 0.0048 -0.0068 6 6 3.5928 -1.1862 -0.0003 7 6 2.2046 -1.1911 -0.0005 8 16 4.7516 -2.5309 0.0163 9 6 6.2181 -1.5387 0.4902 10 1 6.3585 -1.5378 1.5712 11 6 7.4564 -2.0303 -0.2139 12 8 7.7168 -1.6344 -1.3254 13 8 8.2701 -2.9082 0.3936 14 6 9.4772 -3.2895 -0.3177 15 6 9.1924 -4.0427 -1.5916 16 1 9.4404 -3.6025 -2.5460 17 6 8.6153 -5.2937 -1.5384 18 7 8.1991 -5.7776 -0.3886 19 14 8.4244 -6.3013 -3.0997 20 1 7.7792 -7.5989 -2.7757 21 1 7.5800 -5.5575 -4.0688 22 1 9.7618 -6.5483 -3.6961 23 6 10.4803 -2.1376 -0.4943 24 6 11.0807 -2.5577 0.8577 25 6 10.5307 -3.9658 0.5753 26 6 5.8086 -0.1420 -0.0174 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3632 -0.8899 -0.5142 30 1 1.6673 2.1297 0.0029 31 1 4.1112 2.1403 -0.0042 32 1 1.6691 -2.1289 -0.0005 33 1 8.3625 -5.2867 0.4319 34 1 11.1598 -2.2754 -1.3354 35 1 10.0187 -1.1503 -0.4791 36 1 10.6137 -2.0700 1.7133 37 1 12.1694 -2.5119 0.8867 38 1 10.1097 -4.4543 1.4540 39 1 11.2240 -4.6033 0.0266 40 1 6.2492 0.6186 0.6272 41 1 6.1763 -0.0068 -1.0346 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518322603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:33 Heat of formation + Delta-G solvation = -42.123723 kcal Electronic energy + Delta-G solvation = -24254.086881 eV Core-core repulsion = 20804.541654 eV Total energy + Delta-G solvation = -3449.545227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88742 -39.43377 -37.45984 -34.97029 -34.32731 -32.43698 -31.45053 -30.85463 -27.44915 -26.01843 -24.82742 -24.22372 -23.26796 -22.49797 -21.01826 -20.16486 -18.53895 -17.73813 -17.22231 -16.48074 -15.73336 -15.54789 -15.27842 -15.16564 -14.49437 -14.06921 -13.97302 -13.75601 -13.60002 -13.50224 -13.07535 -12.77031 -12.64883 -12.36456 -12.25651 -12.04184 -11.79291 -11.49812 -11.39244 -11.06882 -10.85455 -10.58723 -10.46231 -10.25330 -10.17610 -10.04969 -10.01662 -9.76657 -9.49362 -9.07866 -8.66484 -8.48899 -8.20845 -7.28332 -6.42046 -4.21051 1.06905 1.23653 1.39824 2.28956 3.33210 3.42095 3.44535 3.48496 3.56209 3.63916 4.40450 4.49244 4.60840 4.75703 4.79846 5.02962 5.10793 5.19988 5.26039 5.37381 5.40398 5.45765 5.49296 5.50325 5.63004 5.64865 5.77662 5.86969 5.87864 6.02918 6.18352 6.19634 6.26218 6.26772 6.43180 6.60121 6.64693 6.80220 6.80720 7.02969 7.25536 7.59038 8.06330 8.38171 8.76894 8.86594 9.55404 10.95661 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.004009 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.837609 B = 6983.132223 C = 7985.081594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.125 4.125 4 C -0.089 4.089 5 C -0.105 4.105 6 C -0.084 4.084 7 C -0.088 4.088 8 S -0.067 6.067 9 C -0.068 4.068 10 H 0.126 0.874 11 C 0.487 3.513 12 O -0.482 6.482 13 O -0.349 6.349 14 C 0.210 3.790 15 C -0.596 4.596 16 H 0.060 0.940 17 C 0.034 3.966 18 N -0.885 5.885 19 Si 1.063 2.937 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.108 4.108 26 C -0.080 4.080 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.279 0.721 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 12.243 4.324 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.111 4.111 6 C -0.196 4.196 7 C -0.112 4.112 8 S 0.178 5.822 9 C -0.197 4.197 10 H 0.144 0.856 11 C 0.325 3.675 12 O -0.369 6.369 13 O -0.266 6.266 14 C 0.177 3.823 15 C -0.633 4.633 16 H 0.078 0.922 17 C -0.175 4.175 18 N -0.520 5.520 19 Si 0.891 3.109 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.181 4.181 24 C -0.187 4.187 25 C -0.145 4.145 26 C -0.118 4.118 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.155 9.557 3.185 14.304 hybrid contribution 0.737 2.755 0.776 2.955 sum -9.418 12.312 3.961 15.999 Atomic orbital electron populations 1.20753 0.90660 1.02919 1.02420 1.19799 0.95985 0.92593 0.99224 1.20777 0.93624 0.97655 1.02470 1.20740 0.93824 0.96568 0.99770 1.20770 0.94185 0.93522 1.02619 1.22384 0.96939 0.96539 1.03783 1.20253 0.90769 0.98276 1.01943 1.86931 0.99551 1.09230 1.86517 1.23752 0.94214 0.97051 1.04716 0.85597 1.21618 0.83226 0.77839 0.84776 1.90584 1.72840 1.55066 1.18411 1.86416 1.34340 1.54681 1.51151 1.21003 0.78678 0.91601 0.91054 1.22032 1.47060 1.02428 0.91787 0.92172 1.25861 0.92212 0.95943 1.03446 1.70711 1.39059 1.42935 0.99265 0.83628 0.76670 0.76213 0.74389 1.20595 1.21219 1.21149 1.23319 0.99481 0.98648 0.96661 1.22970 0.99200 0.98665 0.97846 1.22934 0.97189 0.95169 0.99256 1.20886 0.91394 0.94269 1.05213 0.91026 0.91397 0.91355 0.85754 0.85923 0.85521 0.90912 0.89804 0.92945 0.91238 0.92486 0.92236 0.89202 0.88871 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.03 36.00 0.36 -0.50 16 2 C -0.07 -0.82 5.88 -104.67 -0.62 -1.44 16 3 C -0.12 -1.32 9.67 -39.74 -0.38 -1.71 16 4 C -0.09 -1.06 9.97 -39.27 -0.39 -1.45 16 5 C -0.11 -1.53 5.98 -103.79 -0.62 -2.16 16 6 C -0.08 -1.32 6.48 -39.13 -0.25 -1.57 16 7 C -0.09 -1.18 9.73 -39.44 -0.38 -1.56 16 8 S -0.07 -1.27 22.55 -107.50 -2.42 -3.69 16 9 C -0.07 -1.22 3.94 -27.29 -0.11 -1.33 16 10 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 11 C 0.49 11.09 6.61 36.01 0.24 11.32 16 12 O -0.48 -12.05 13.81 -18.75 -0.26 -12.31 16 13 O -0.35 -8.59 9.22 -39.26 -0.36 -8.95 16 14 C 0.21 5.21 0.11 -90.96 -0.01 5.20 16 15 C -0.60 -16.73 7.37 -34.44 -0.25 -16.99 16 16 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 17 C 0.03 0.97 5.36 -17.83 -0.10 0.87 16 18 N -0.88 -26.06 13.52 55.43 0.75 -25.31 16 19 Si 1.06 25.47 29.91 -169.99 -5.08 20.39 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.14 -3.10 6.90 -25.92 -0.18 -3.28 16 24 C -0.15 -2.82 8.03 -25.92 -0.21 -3.03 16 25 C -0.11 -2.39 6.55 -25.92 -0.17 -2.56 16 26 C -0.08 -1.22 5.82 -27.20 -0.16 -1.38 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.28 8.18 5.76 -40.82 -0.24 7.95 16 34 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 35 H 0.05 1.12 7.33 -51.93 -0.38 0.74 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.32 7.74 -51.93 -0.40 0.92 16 39 H 0.09 2.00 8.09 -51.93 -0.42 1.58 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.11 1.92 6.87 -51.93 -0.36 1.56 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -32.23 351.55 -10.96 -43.18 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.64 Total: 2.94 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -3.23 Total: -21.55 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.75 Total: -25.31 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.62 Total: -21.26 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -2.42 Total: -3.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.23 -10.96 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518322603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.060 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds