Wall clock time and date at job start Tue Mar 31 2020 12:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38329 * 120.35173 * 2 1 4 4 C 1.37701 * 120.54249 * 180.18805 * 3 2 1 5 5 C 1.39602 * 121.05558 * 359.94509 * 4 3 2 6 6 C 1.38880 * 117.79989 * 359.75311 * 5 4 3 7 7 C 1.38032 * 120.35691 * 180.02562 * 2 1 3 8 8 S 1.77517 * 108.29491 * 180.74982 * 6 5 4 9 9 C 1.83296 * 96.58253 * 15.12781 * 8 6 5 10 10 H 1.09003 * 111.09356 * 93.18140 * 9 8 6 11 11 C 1.50700 * 111.10166 * 217.23076 * 9 8 6 12 12 O 1.20828 * 119.99974 * 85.16857 * 11 9 8 13 13 O 1.34230 * 120.00084 * 265.17411 * 11 9 8 14 14 C 1.45200 * 116.99800 * 182.84793 * 13 11 9 15 15 C 1.50706 * 112.84433 * 294.96114 * 14 13 11 16 16 H 1.08000 * 119.99513 * 113.85198 * 15 14 13 17 17 C 1.37871 * 120.00084 * 293.84735 * 15 14 13 18 18 N 1.31507 * 120.00291 * 6.34914 * 17 15 14 19 19 Si 1.86801 * 119.99962 * 186.34762 * 17 15 14 20 20 H 1.48494 * 109.47461 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47147 * 300.00347 * 19 17 15 22 22 H 1.48500 * 109.47225 * 59.99946 * 19 17 15 23 23 C 1.53773 * 113.69302 * 66.22961 * 14 13 11 24 24 C 1.53782 * 87.07906 * 89.12911 * 23 14 13 25 25 C 1.53776 * 113.61371 * 163.77246 * 14 13 11 26 26 C 1.50874 * 126.82977 * 179.70405 * 5 4 3 27 27 H 1.08998 * 109.47135 * 269.97605 * 1 2 3 28 28 H 1.08997 * 109.47076 * 29.98474 * 1 2 3 29 29 H 1.09003 * 109.46427 * 149.97987 * 1 2 3 30 30 H 1.07993 * 119.72944 * 0.17636 * 3 2 1 31 31 H 1.08004 * 119.47072 * 179.97438 * 4 3 2 32 32 H 1.07996 * 119.92078 * 359.97438 * 7 2 1 33 33 H 0.97002 * 120.00243 * 355.04249 * 18 17 15 34 34 H 1.09004 * 113.61242 * 203.67321 * 23 14 13 35 35 H 1.08993 * 113.61847 * 334.58166 * 23 14 13 36 36 H 1.08996 * 113.61477 * 270.88235 * 24 23 14 37 37 H 1.09001 * 113.69085 * 139.99011 * 24 23 14 38 38 H 1.08994 * 113.61704 * 25.33969 * 25 14 13 39 39 H 1.09003 * 113.61685 * 156.24961 * 25 14 13 40 40 H 1.08999 * 109.28197 * 39.12781 * 26 5 4 41 41 H 1.09003 * 109.28050 * 279.68587 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1937 0.0000 4 6 3.5829 1.1983 -0.0039 5 6 4.3071 0.0048 -0.0068 6 6 3.5928 -1.1862 -0.0003 7 6 2.2046 -1.1911 -0.0005 8 16 4.7516 -2.5309 0.0163 9 6 6.2181 -1.5387 0.4902 10 1 6.3585 -1.5378 1.5712 11 6 7.4564 -2.0303 -0.2139 12 8 7.7168 -1.6344 -1.3254 13 8 8.2701 -2.9082 0.3936 14 6 9.4772 -3.2895 -0.3177 15 6 9.1924 -4.0427 -1.5916 16 1 9.4404 -3.6025 -2.5460 17 6 8.6153 -5.2937 -1.5384 18 7 8.1991 -5.7776 -0.3886 19 14 8.4244 -6.3013 -3.0997 20 1 7.7792 -7.5989 -2.7757 21 1 7.5800 -5.5575 -4.0688 22 1 9.7618 -6.5483 -3.6961 23 6 10.4803 -2.1376 -0.4943 24 6 11.0807 -2.5577 0.8577 25 6 10.5307 -3.9658 0.5753 26 6 5.8086 -0.1420 -0.0174 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3632 -0.8899 -0.5142 30 1 1.6673 2.1297 0.0029 31 1 4.1112 2.1403 -0.0042 32 1 1.6691 -2.1289 -0.0005 33 1 8.3625 -5.2867 0.4319 34 1 11.1598 -2.2754 -1.3354 35 1 10.0187 -1.1503 -0.4791 36 1 10.6137 -2.0700 1.7133 37 1 12.1694 -2.5119 0.8867 38 1 10.1097 -4.4543 1.4540 39 1 11.2240 -4.6033 0.0266 40 1 6.2492 0.6186 0.6272 41 1 6.1763 -0.0068 -1.0346 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518322603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:32 Heat of formation + Delta-G solvation = -57.841943 kcal Electronic energy + Delta-G solvation = -24254.768475 eV Core-core repulsion = 20804.541654 eV Total energy + Delta-G solvation = -3450.226821 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64298 -40.52883 -39.20482 -36.36076 -35.95850 -34.56230 -32.49189 -31.87257 -28.63175 -27.90010 -26.57596 -25.51440 -24.55935 -24.02934 -22.25170 -21.55109 -20.36273 -19.61249 -18.68120 -18.12635 -17.19226 -16.96031 -16.58566 -16.49411 -16.00432 -15.72762 -15.40723 -15.31572 -14.88259 -14.69379 -14.42037 -14.23301 -14.08844 -13.62338 -13.55172 -13.23948 -13.00796 -12.86083 -12.79900 -12.54643 -12.33917 -12.32524 -12.10110 -12.04832 -11.96275 -11.87204 -11.51005 -11.25889 -10.94080 -10.70119 -10.59317 -10.20095 -9.63408 -8.65716 -8.64118 -6.43900 -0.12568 0.13266 0.28626 0.99970 1.45731 1.50298 1.68645 1.72471 1.76596 2.49533 2.57242 3.12194 3.14470 3.45337 3.65069 3.76087 3.78669 3.85083 3.94845 3.99789 4.13558 4.27785 4.30323 4.42887 4.50043 4.50990 4.68113 4.71942 4.84112 4.86847 4.88331 4.93658 4.96587 5.03883 5.20141 5.25835 5.33148 5.33675 5.47158 5.54827 5.67502 5.91658 6.05246 6.15397 6.56436 6.98363 7.38727 8.73180 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.004009 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.837609 B = 6983.132223 C = 7985.081594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 C -0.115 4.115 4 C -0.086 4.086 5 C -0.121 4.121 6 C -0.096 4.096 7 C -0.103 4.103 8 S -0.151 6.151 9 C -0.053 4.053 10 H 0.147 0.853 11 C 0.481 3.519 12 O -0.512 6.512 13 O -0.358 6.358 14 C 0.185 3.815 15 C -0.611 4.611 16 H 0.038 0.962 17 C -0.007 4.007 18 N -0.908 5.908 19 Si 1.100 2.900 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.261 1.261 23 C -0.141 4.141 24 C -0.120 4.120 25 C -0.109 4.109 26 C -0.072 4.072 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.130 0.870 33 H 0.270 0.730 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 14.984 5.039 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.070 4.070 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.126 4.126 6 C -0.209 4.209 7 C -0.126 4.126 8 S 0.093 5.907 9 C -0.182 4.182 10 H 0.164 0.836 11 C 0.321 3.679 12 O -0.401 6.401 13 O -0.275 6.275 14 C 0.151 3.849 15 C -0.648 4.648 16 H 0.056 0.944 17 C -0.211 4.211 18 N -0.544 5.544 19 Si 0.922 3.078 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.179 4.179 24 C -0.158 4.158 25 C -0.147 4.147 26 C -0.109 4.109 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.181 0.819 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.144 0.856 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.407 12.321 3.912 17.240 hybrid contribution 0.970 2.027 0.531 2.309 sum -10.437 14.348 4.443 18.290 Atomic orbital electron populations 1.20845 0.87997 1.04118 1.03672 1.20241 0.97828 0.91734 0.97232 1.21288 0.93275 0.99000 0.99934 1.21111 0.94562 0.96479 0.98428 1.20818 0.93513 0.94229 1.04067 1.22287 0.97213 0.94616 1.06745 1.20516 0.89949 0.99783 1.02389 1.87042 1.02483 1.13365 1.87840 1.23710 0.91177 0.98115 1.05195 0.83558 1.22411 0.83941 0.76850 0.84664 1.90554 1.73720 1.56054 1.19782 1.86376 1.34730 1.55376 1.51038 1.21242 0.79369 0.93467 0.90813 1.22233 1.47071 1.03023 0.92457 0.94374 1.26992 0.91722 0.97158 1.05203 1.70809 1.40879 1.43229 0.99459 0.83174 0.77808 0.75060 0.71741 1.20299 1.21402 1.18557 1.23268 0.98683 0.97367 0.98549 1.22841 1.01216 0.95279 0.96416 1.22895 0.96459 0.96984 0.98319 1.20838 0.92551 0.93048 1.04467 0.89587 0.89279 0.91174 0.81867 0.82999 0.85256 0.91912 0.90025 0.93094 0.89750 0.89051 0.92963 0.89857 0.85587 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.03 71.23 0.71 -0.57 16 2 C -0.07 -1.30 5.88 -19.89 -0.12 -1.42 16 3 C -0.12 -1.94 9.67 22.16 0.21 -1.73 16 4 C -0.09 -1.75 9.97 22.47 0.22 -1.53 16 5 C -0.12 -3.38 5.98 -19.33 -0.12 -3.49 16 6 C -0.10 -3.04 6.48 22.56 0.15 -2.89 16 7 C -0.10 -2.65 9.73 22.36 0.22 -2.43 16 8 S -0.15 -6.02 22.55 -56.49 -1.27 -7.29 16 9 C -0.05 -1.95 3.94 30.23 0.12 -1.83 16 10 H 0.15 4.68 8.14 -2.39 -0.02 4.66 16 11 C 0.48 22.65 6.61 71.24 0.47 23.12 16 12 O -0.51 -26.69 13.81 21.96 0.30 -26.38 16 13 O -0.36 -18.17 9.22 -51.42 -0.47 -18.64 16 14 C 0.18 9.39 0.11 -11.02 0.00 9.39 16 15 C -0.61 -35.53 7.37 25.60 0.19 -35.34 16 16 H 0.04 2.32 7.82 -2.91 -0.02 2.29 16 17 C -0.01 -0.42 5.36 84.65 0.45 0.03 16 18 N -0.91 -55.30 13.52 21.44 0.29 -55.01 16 19 Si 1.10 52.64 29.91 68.60 2.05 54.69 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 23 C -0.14 -6.08 6.90 31.12 0.21 -5.87 16 24 C -0.12 -4.32 8.03 31.12 0.25 -4.07 16 25 C -0.11 -4.85 6.55 31.12 0.20 -4.64 16 26 C -0.07 -2.15 5.82 30.29 0.18 -1.98 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 29 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 30 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.27 16.48 5.76 -92.71 -0.53 15.95 16 34 H 0.08 3.50 8.09 -2.39 -0.02 3.48 16 35 H 0.05 2.18 7.33 -2.39 -0.02 2.16 16 36 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.05 2.36 7.74 -2.39 -0.02 2.34 16 39 H 0.08 3.75 8.09 -2.39 -0.02 3.73 16 40 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.09 3.17 6.87 -2.39 -0.02 3.15 16 Total: -1.00 -74.31 351.55 5.52 -68.79 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.27 Total: 19.10 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.36 Total: -35.25 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.29 Total: -55.01 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.17 Total: -45.02 kcal Atomic # 14 Polarization: 52.64 SS G_CDS: 2.05 Total: 54.69 kcal Atomic # 16 Polarization: -6.02 SS G_CDS: -1.27 Total: -7.29 kcal Total: -74.31 5.52 -68.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518322603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.948 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds