Wall clock time and date at job start Tue Mar 31 2020 12:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46793 * 2 1 4 4 C 1.50696 * 109.47538 * 239.99981 * 2 1 3 5 5 H 1.08002 * 119.99738 * 275.51556 * 4 2 1 6 6 C 1.37877 * 120.00253 * 95.51673 * 4 2 1 7 7 N 1.31513 * 120.00001 * 186.17632 * 6 4 2 8 8 Si 1.86793 * 119.99727 * 6.17840 * 6 4 2 9 9 H 1.48502 * 109.47368 * 84.64448 * 8 6 4 10 10 H 1.48507 * 109.47032 * 204.64374 * 8 6 4 11 11 H 1.48494 * 109.47638 * 324.64139 * 8 6 4 12 12 N 1.46500 * 109.46820 * 119.99746 * 2 1 3 13 13 C 1.34781 * 119.99849 * 275.00202 * 12 2 1 14 14 O 1.21580 * 120.00276 * 359.97438 * 13 12 2 15 15 N 1.34779 * 119.99758 * 179.97438 * 13 12 2 16 16 C 1.38789 * 119.99992 * 185.98014 * 15 13 12 17 17 C 1.38629 * 126.63107 * 129.79410 * 16 15 13 18 18 C 1.46760 * 126.09963 * 0.02562 * 17 16 15 19 19 O 1.21609 * 119.99982 * 359.97438 * 18 17 16 20 20 O 1.34864 * 120.00441 * 179.97438 * 18 17 16 21 21 N 1.35011 * 107.80621 * 179.97438 * 17 16 15 22 22 C 1.32064 * 109.22821 * 359.97438 * 21 17 16 23 23 C 1.41330 * 131.77849 * 180.02562 * 22 21 17 24 24 C 1.35806 * 119.38884 * 179.97438 * 23 22 21 25 25 C 1.40693 * 119.81182 * 0.02562 * 24 23 22 26 26 C 1.34740 * 120.36687 * 359.97438 * 25 24 23 27 27 N 1.36518 * 126.63346 * 309.78193 * 16 15 13 28 28 H 1.08999 * 109.47518 * 305.42926 * 1 2 3 29 29 H 1.09008 * 109.46639 * 65.42640 * 1 2 3 30 30 H 1.08997 * 109.47124 * 185.41852 * 1 2 3 31 31 H 0.96997 * 120.00114 * 180.02562 * 7 6 4 32 32 H 0.96996 * 120.00412 * 95.00441 * 12 2 1 33 33 H 0.96993 * 120.00195 * 5.99279 * 15 13 12 34 34 H 0.96696 * 116.99962 * 179.97438 * 20 18 17 35 35 H 1.08000 * 120.31172 * 0.02562 * 23 22 21 36 36 H 1.07999 * 120.09424 * 180.28052 * 24 23 22 37 37 H 1.08003 * 119.81958 * 180.02562 * 25 24 23 38 38 H 1.08007 * 119.68253 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1276 -1.7862 -1.2317 6 6 2.3705 0.0130 -2.3544 7 7 2.6923 -0.6115 -3.4661 8 14 2.3714 1.8801 -2.2981 9 1 3.6717 2.3586 -1.7638 10 1 2.1716 2.4168 -3.6683 11 1 1.2716 2.3494 -1.4175 12 7 2.0182 -0.6906 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8581 1.1616 2.4116 15 7 2.5956 -0.6536 3.4578 16 6 2.6109 0.0031 4.6805 17 6 2.0980 -0.4683 5.8790 18 6 1.4359 -1.7614 6.0873 19 8 1.2970 -2.5304 5.1555 20 8 0.9814 -2.0969 7.3119 21 7 2.3171 0.4739 6.8208 22 6 2.9378 1.5020 6.2714 23 6 3.3892 2.7276 6.8114 24 6 4.0107 3.6238 6.0021 25 6 4.1975 3.3243 4.6401 26 6 3.7636 2.1531 4.1345 27 7 3.1343 1.2379 4.9354 28 1 -0.3634 0.5957 0.8373 29 1 -0.3633 0.4274 -0.9347 30 1 -0.3633 -1.0230 0.0970 31 1 2.9305 -0.1026 -4.2568 32 1 2.2490 -1.6317 1.1528 33 1 2.9079 -1.5697 3.3955 34 1 0.5520 -2.9588 7.3998 35 1 3.2421 2.9492 7.8581 36 1 4.3642 4.5619 6.4037 37 1 4.6920 4.0367 3.9965 38 1 3.9132 1.9345 3.0874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573536264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:48 Heat of formation + Delta-G solvation = -23.975454 kcal Electronic energy + Delta-G solvation = -26518.222921 eV Core-core repulsion = 22555.464199 eV Total energy + Delta-G solvation = -3962.758723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.03654 -39.98650 -39.69570 -37.41797 -36.15431 -35.50649 -34.52684 -33.42707 -32.40724 -30.61334 -29.86166 -28.15372 -25.50320 -25.39503 -23.44578 -22.83489 -21.52290 -20.94164 -20.05279 -18.73924 -18.50976 -18.02836 -17.23365 -16.79548 -16.67030 -16.19215 -15.82176 -15.39170 -15.24213 -15.03956 -14.91410 -14.42680 -14.14518 -13.41773 -13.38478 -12.61919 -12.59552 -12.53622 -12.04756 -12.00792 -11.69359 -11.56076 -11.34134 -11.18245 -10.94477 -10.93879 -10.77315 -10.70814 -10.08222 -9.95535 -9.76056 -9.30681 -8.97250 -8.79876 -8.33881 -7.71171 -6.32959 -4.37154 0.43070 0.98649 1.69810 1.94625 2.84695 2.95314 3.01191 3.17689 3.26035 3.32472 3.38438 3.50029 3.90505 4.22905 4.44724 4.58524 4.66034 4.77627 4.91471 5.09726 5.23590 5.25507 5.53207 5.79795 5.87987 6.03822 6.20822 6.23102 6.32065 6.41701 6.46431 6.60403 6.72204 6.86729 6.95123 7.18622 7.30792 7.40020 7.44497 7.86827 8.10568 8.48068 8.68389 8.86494 9.27985 10.78522 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.004314 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.867595 B = 6488.543309 C = 8062.510478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.247 3.753 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.083 3.917 7 N -0.884 5.884 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.704 5.704 13 C 0.691 3.309 14 O -0.591 6.591 15 N -0.658 5.658 16 C 0.295 3.705 17 C -0.012 4.012 18 C 0.576 3.424 19 O -0.508 6.508 20 O -0.496 6.496 21 N -0.435 5.435 22 C 0.234 3.766 23 C -0.087 4.087 24 C -0.090 4.090 25 C -0.151 4.151 26 C 0.095 3.905 27 N -0.362 5.362 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.269 0.731 32 H 0.395 0.605 33 H 0.422 0.578 34 H 0.413 0.587 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 3.886 19.687 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.145 3.855 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.520 5.520 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.356 5.356 13 C 0.392 3.608 14 O -0.469 6.469 15 N -0.314 5.314 16 C 0.080 3.920 17 C -0.145 4.145 18 C 0.419 3.581 19 O -0.396 6.396 20 O -0.306 6.306 21 N -0.155 5.155 22 C -0.013 4.013 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.171 4.171 26 C -0.025 4.025 27 N -0.038 5.038 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.262 0.738 34 H 0.271 0.729 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.003 4.964 19.857 20.687 hybrid contribution 0.186 -0.415 -1.119 1.208 sum 3.189 4.549 18.738 19.544 Atomic orbital electron populations 1.22238 0.98387 1.00292 0.99867 1.19138 0.90994 0.93999 0.81380 0.93072 1.20989 1.45425 0.95700 0.94857 0.90172 1.24936 0.93560 0.98676 0.95067 1.69877 1.44399 1.36319 1.01431 0.86886 0.79671 0.85771 0.77571 1.19882 1.21051 1.18460 1.46077 1.67463 1.13867 1.08144 1.16360 0.78542 0.85501 0.80404 1.90901 1.57606 1.14150 1.84282 1.41936 1.68235 1.17261 1.03940 1.17176 1.01384 0.85803 0.87609 1.19050 1.09537 0.96111 0.89791 1.18943 0.74828 0.84055 0.80257 1.90959 1.54897 1.50972 1.42762 1.84674 1.71008 1.42492 1.32473 1.70955 1.16156 0.99291 1.29105 1.20719 1.03750 0.97585 0.79281 1.20256 0.99750 0.89347 1.01310 1.21075 0.97629 0.99624 0.93022 1.20860 1.03615 0.96129 0.96546 1.21893 0.94219 0.89292 0.97124 1.42757 1.36964 1.13490 1.10607 0.95188 0.92447 0.93471 0.92090 0.77109 0.73788 0.72910 0.82786 0.83822 0.82960 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.47 37.16 0.35 -2.90 16 2 C 0.25 5.70 2.26 -69.09 -0.16 5.54 16 3 H 0.05 1.27 4.65 -51.93 -0.24 1.03 16 4 C -0.53 -13.82 9.04 -34.44 -0.31 -14.13 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.88 -25.31 13.96 55.43 0.77 -24.53 16 8 Si 0.87 20.72 27.02 -169.99 -4.59 16.12 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -6.11 6.77 56.52 0.38 -5.73 16 12 N -0.70 -13.86 5.07 -59.81 -0.30 -14.16 16 13 C 0.69 13.26 8.14 -86.91 -0.71 12.55 16 14 O -0.59 -12.93 13.44 5.30 0.07 -12.86 16 15 N -0.66 -10.49 4.75 -15.13 -0.07 -10.56 16 16 C 0.29 4.78 6.99 -151.77 -1.06 3.72 16 17 C -0.01 -0.18 7.03 -82.88 -0.58 -0.77 16 18 C 0.58 8.22 8.31 34.17 0.28 8.50 16 19 O -0.51 -7.87 16.73 -19.35 -0.32 -8.20 16 20 O -0.50 -5.51 13.44 -40.94 -0.55 -6.06 16 21 N -0.43 -6.76 11.35 -8.94 -0.10 -6.87 16 22 C 0.23 3.33 7.79 -155.82 -1.21 2.12 16 23 C -0.09 -0.89 10.11 -39.28 -0.40 -1.29 16 24 C -0.09 -0.77 10.06 -39.53 -0.40 -1.16 16 25 C -0.15 -1.53 9.98 -39.89 -0.40 -1.93 16 26 C 0.09 1.30 9.46 -16.51 -0.16 1.14 16 27 N -0.36 -5.51 2.85 -61.12 -0.17 -5.69 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.40 6.89 8.61 -40.82 -0.35 6.54 16 33 H 0.42 5.74 8.43 -40.82 -0.34 5.40 16 34 H 0.41 2.31 9.11 45.56 0.42 2.73 16 35 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.17 2.47 6.78 -52.48 -0.36 2.12 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -34.31 336.25 -8.04 -42.35 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -2.99 Total: 11.86 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: -4.84 Total: 13.53 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.12 Total: -61.81 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.80 Total: -27.12 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.59 Total: 16.12 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.31 -8.04 -42.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573536264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.373 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds