Wall clock time and date at job start Tue Mar 31 2020 12:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46793 * 2 1 4 4 C 1.50696 * 109.47538 * 239.99981 * 2 1 3 5 5 H 1.08002 * 119.99738 * 275.51556 * 4 2 1 6 6 C 1.37877 * 120.00253 * 95.51673 * 4 2 1 7 7 N 1.31513 * 120.00001 * 186.17632 * 6 4 2 8 8 Si 1.86793 * 119.99727 * 6.17840 * 6 4 2 9 9 H 1.48502 * 109.47368 * 84.64448 * 8 6 4 10 10 H 1.48507 * 109.47032 * 204.64374 * 8 6 4 11 11 H 1.48494 * 109.47638 * 324.64139 * 8 6 4 12 12 N 1.46500 * 109.46820 * 119.99746 * 2 1 3 13 13 C 1.34781 * 119.99849 * 275.00202 * 12 2 1 14 14 O 1.21580 * 120.00276 * 359.97438 * 13 12 2 15 15 N 1.34779 * 119.99758 * 179.97438 * 13 12 2 16 16 C 1.38789 * 119.99992 * 185.98014 * 15 13 12 17 17 C 1.38629 * 126.63107 * 129.79410 * 16 15 13 18 18 C 1.46760 * 126.09963 * 0.02562 * 17 16 15 19 19 O 1.21609 * 119.99982 * 359.97438 * 18 17 16 20 20 O 1.34864 * 120.00441 * 179.97438 * 18 17 16 21 21 N 1.35011 * 107.80621 * 179.97438 * 17 16 15 22 22 C 1.32064 * 109.22821 * 359.97438 * 21 17 16 23 23 C 1.41330 * 131.77849 * 180.02562 * 22 21 17 24 24 C 1.35806 * 119.38884 * 179.97438 * 23 22 21 25 25 C 1.40693 * 119.81182 * 0.02562 * 24 23 22 26 26 C 1.34740 * 120.36687 * 359.97438 * 25 24 23 27 27 N 1.36518 * 126.63346 * 309.78193 * 16 15 13 28 28 H 1.08999 * 109.47518 * 305.42926 * 1 2 3 29 29 H 1.09008 * 109.46639 * 65.42640 * 1 2 3 30 30 H 1.08997 * 109.47124 * 185.41852 * 1 2 3 31 31 H 0.96997 * 120.00114 * 180.02562 * 7 6 4 32 32 H 0.96996 * 120.00412 * 95.00441 * 12 2 1 33 33 H 0.96993 * 120.00195 * 5.99279 * 15 13 12 34 34 H 0.96696 * 116.99962 * 179.97438 * 20 18 17 35 35 H 1.08000 * 120.31172 * 0.02562 * 23 22 21 36 36 H 1.07999 * 120.09424 * 180.28052 * 24 23 22 37 37 H 1.08003 * 119.81958 * 180.02562 * 25 24 23 38 38 H 1.08007 * 119.68253 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1276 -1.7862 -1.2317 6 6 2.3705 0.0130 -2.3544 7 7 2.6923 -0.6115 -3.4661 8 14 2.3714 1.8801 -2.2981 9 1 3.6717 2.3586 -1.7638 10 1 2.1716 2.4168 -3.6683 11 1 1.2716 2.3494 -1.4175 12 7 2.0182 -0.6906 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8581 1.1616 2.4116 15 7 2.5956 -0.6536 3.4578 16 6 2.6109 0.0031 4.6805 17 6 2.0980 -0.4683 5.8790 18 6 1.4359 -1.7614 6.0873 19 8 1.2970 -2.5304 5.1555 20 8 0.9814 -2.0969 7.3119 21 7 2.3171 0.4739 6.8208 22 6 2.9378 1.5020 6.2714 23 6 3.3892 2.7276 6.8114 24 6 4.0107 3.6238 6.0021 25 6 4.1975 3.3243 4.6401 26 6 3.7636 2.1531 4.1345 27 7 3.1343 1.2379 4.9354 28 1 -0.3634 0.5957 0.8373 29 1 -0.3633 0.4274 -0.9347 30 1 -0.3633 -1.0230 0.0970 31 1 2.9305 -0.1026 -4.2568 32 1 2.2490 -1.6317 1.1528 33 1 2.9079 -1.5697 3.3955 34 1 0.5520 -2.9588 7.3998 35 1 3.2421 2.9492 7.8581 36 1 4.3642 4.5619 6.4037 37 1 4.6920 4.0367 3.9965 38 1 3.9132 1.9345 3.0874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573536264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:47 Heat of formation + Delta-G solvation = -48.759843 kcal Electronic energy + Delta-G solvation = -26519.297653 eV Core-core repulsion = 22555.464199 eV Total energy + Delta-G solvation = -3963.833454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.08921 -41.21856 -41.00512 -38.36838 -37.28126 -37.01936 -35.96959 -34.64035 -34.17980 -31.79736 -31.32680 -29.28569 -27.38208 -26.49937 -24.66705 -23.80793 -22.91174 -22.04812 -21.72080 -20.32935 -19.61911 -19.14150 -18.54695 -18.24707 -17.71939 -17.33874 -17.19806 -16.63445 -16.35331 -16.31996 -16.08564 -15.90001 -15.42604 -15.09517 -14.57694 -14.38619 -14.37429 -13.47416 -13.34193 -13.05029 -13.01269 -12.89032 -12.78746 -12.58129 -12.52369 -12.39512 -12.04386 -11.91498 -11.86170 -11.55913 -11.29045 -11.03702 -10.85078 -10.07060 -9.91876 -8.78445 -8.41172 -6.48845 -0.55692 0.02639 0.68256 0.87597 1.29179 1.33807 1.44466 1.56407 1.83166 1.92293 2.15108 2.25687 2.47590 2.89071 2.94831 3.26469 3.54637 3.65013 3.97554 4.13214 4.25337 4.32672 4.39691 4.66653 4.68124 4.77027 4.84307 4.98582 5.08298 5.18551 5.22086 5.27670 5.38749 5.39799 5.52641 5.61148 5.69943 5.85494 6.17044 6.36911 6.56941 6.92242 6.94673 7.17062 7.36395 8.73652 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.004314 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.867595 B = 6488.543309 C = 8062.510478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.254 3.746 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.055 0.945 6 C 0.035 3.965 7 N -0.927 5.927 8 Si 0.930 3.070 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.257 1.257 12 N -0.705 5.705 13 C 0.697 3.303 14 O -0.617 6.617 15 N -0.643 5.643 16 C 0.256 3.744 17 C -0.019 4.019 18 C 0.579 3.421 19 O -0.527 6.527 20 O -0.490 6.490 21 N -0.457 5.457 22 C 0.226 3.774 23 C -0.094 4.094 24 C -0.070 4.070 25 C -0.124 4.124 26 C 0.048 3.952 27 N -0.365 5.365 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.272 0.728 32 H 0.405 0.595 33 H 0.431 0.569 34 H 0.436 0.564 35 H 0.185 0.815 36 H 0.194 0.806 37 H 0.184 0.816 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.875 6.284 21.973 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.151 3.849 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.166 4.166 7 N -0.565 5.565 8 Si 0.754 3.246 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.181 1.181 12 N -0.358 5.358 13 C 0.397 3.603 14 O -0.497 6.497 15 N -0.299 5.299 16 C 0.042 3.958 17 C -0.152 4.152 18 C 0.423 3.577 19 O -0.417 6.417 20 O -0.303 6.303 21 N -0.178 5.178 22 C -0.021 4.021 23 C -0.113 4.113 24 C -0.093 4.093 25 C -0.144 4.144 26 C -0.072 4.072 27 N -0.040 5.040 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.240 0.760 33 H 0.272 0.728 34 H 0.298 0.702 35 H 0.202 0.798 36 H 0.211 0.789 37 H 0.201 0.799 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.518 7.323 22.201 23.641 hybrid contribution 0.086 -1.106 -1.652 1.990 sum 3.604 6.217 20.550 21.770 Atomic orbital electron populations 1.22146 0.97349 1.00872 0.99806 1.18855 0.91655 0.93041 0.81376 0.94369 1.21120 1.44782 0.94755 0.96078 0.92631 1.25619 0.93500 1.02709 0.94741 1.69979 1.46280 1.37997 1.02234 0.86002 0.79849 0.80951 0.77780 1.19308 1.20343 1.18134 1.45662 1.68021 1.14254 1.07814 1.16271 0.78233 0.85065 0.80722 1.90869 1.58678 1.15310 1.84843 1.41530 1.67597 1.17450 1.03316 1.17327 1.03870 0.87095 0.87497 1.19339 1.09306 0.96745 0.89828 1.18850 0.74570 0.83557 0.80754 1.90942 1.55787 1.51428 1.43538 1.84624 1.70679 1.44283 1.30685 1.70943 1.17625 0.99917 1.29289 1.21518 1.03042 0.98478 0.79041 1.20799 0.99536 0.87916 1.03088 1.21634 0.95299 1.00669 0.91697 1.21422 1.00516 0.94571 0.97879 1.21976 0.97440 0.91036 0.96757 1.42846 1.36761 1.13183 1.11170 0.94911 0.92703 0.92648 0.91867 0.75963 0.72788 0.70185 0.79824 0.78909 0.79866 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.20 9.47 71.98 0.68 -5.51 16 2 C 0.25 11.78 2.26 44.24 0.10 11.88 16 3 H 0.04 1.89 4.65 -2.38 -0.01 1.88 16 4 C -0.53 -27.97 9.04 25.60 0.23 -27.74 16 5 H 0.06 3.15 8.06 -2.91 -0.02 3.13 16 6 C 0.04 1.93 5.47 84.65 0.46 2.40 16 7 N -0.93 -53.98 13.96 21.45 0.30 -53.68 16 8 Si 0.93 42.77 27.02 68.60 1.85 44.63 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -11.62 6.77 99.48 0.67 -10.94 16 12 N -0.71 -28.11 5.07 -461.42 -2.34 -30.45 16 13 C 0.70 27.09 8.14 179.05 1.46 28.55 16 14 O -0.62 -27.25 13.44 -3.97 -0.05 -27.30 16 15 N -0.64 -21.00 4.75 -320.03 -1.52 -22.52 16 16 C 0.26 8.44 6.99 131.74 0.92 9.36 16 17 C -0.02 -0.59 7.03 40.98 0.29 -0.30 16 18 C 0.58 16.44 8.31 70.05 0.58 17.02 16 19 O -0.53 -16.39 16.73 19.48 0.33 -16.07 16 20 O -0.49 -10.37 13.44 -57.78 -0.78 -11.15 16 21 N -0.46 -13.94 11.35 -182.19 -2.07 -16.01 16 22 C 0.23 6.13 7.79 134.18 1.04 7.18 16 23 C -0.09 -1.60 10.11 22.47 0.23 -1.37 16 24 C -0.07 -0.85 10.06 22.31 0.22 -0.63 16 25 C -0.12 -2.10 9.98 22.07 0.22 -1.88 16 26 C 0.05 1.28 9.46 83.09 0.79 2.06 16 27 N -0.36 -10.98 2.85 -347.27 -0.99 -11.97 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.41 14.41 8.61 -92.71 -0.80 13.62 16 33 H 0.43 12.10 8.43 -92.71 -0.78 11.32 16 34 H 0.44 4.24 9.11 -74.06 -0.67 3.57 16 35 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.15 4.42 6.78 -2.91 -0.02 4.40 16 Total: -1.00 -75.96 336.25 0.84 -75.12 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -1.12 Total: 28.39 kcal Atomic # 6 Polarization: 33.79 SS G_CDS: 7.23 Total: 41.01 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -6.62 Total: -134.64 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.50 Total: -54.51 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.85 Total: 44.63 kcal Total: -75.96 0.84 -75.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573536264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.360 kcal (2) G-P(sol) polarization free energy of solvation -75.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds