Wall clock time and date at job start Tue Mar 31 2020 12:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47013 * 270.00401 * 3 2 1 5 5 H 1.48498 * 109.47317 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.47255 * 150.00151 * 3 2 1 7 7 C 1.37875 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00076 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47115 * 184.79255 * 9 7 2 11 11 C 1.46898 * 111.00337 * 297.82790 * 10 9 7 12 12 C 1.50699 * 109.47449 * 288.13558 * 11 10 9 13 13 N 1.30927 * 126.44319 * 89.99478 * 12 11 10 14 14 C 1.35244 * 105.58229 * 180.02562 * 13 12 11 15 15 C 1.48364 * 126.41167 * 180.02562 * 14 13 12 16 16 O 1.21394 * 120.00171 * 0.02562 * 15 14 13 17 17 O 1.34645 * 119.99930 * 180.02562 * 15 14 13 18 18 N 1.30689 * 107.17944 * 0.02562 * 14 13 12 19 19 O 1.21294 * 110.10582 * 359.70902 * 18 14 13 20 20 C 1.46900 * 110.99807 * 61.78812 * 10 9 7 21 21 C 1.50695 * 109.47553 * 66.04400 * 20 10 9 22 22 C 1.38223 * 119.62248 * 94.97828 * 21 20 10 23 23 C 1.38631 * 119.16506 * 179.79318 * 22 21 20 24 24 C 1.38672 * 118.41438 * 0.47027 * 23 22 21 25 25 C 1.38178 * 119.16775 * 359.51082 * 24 23 22 26 26 N 1.31865 * 119.61533 * 275.00226 * 21 20 10 27 27 H 0.97001 * 119.99757 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47297 * 64.79650 * 9 7 2 29 29 H 1.08999 * 109.47359 * 304.79947 * 9 7 2 30 30 H 1.08998 * 109.46840 * 48.14015 * 11 10 9 31 31 H 1.09003 * 109.47088 * 168.13300 * 11 10 9 32 32 H 0.96697 * 116.99825 * 180.02562 * 17 15 14 33 33 H 1.09004 * 109.46952 * 306.03668 * 20 10 9 34 34 H 1.08998 * 109.47120 * 186.04459 * 20 10 9 35 35 H 1.07999 * 120.41723 * 0.02562 * 22 21 20 36 36 H 1.07993 * 120.79210 * 180.23714 * 23 22 21 37 37 H 1.07999 * 120.41653 * 179.78182 * 24 23 22 38 38 H 1.08003 * 119.61849 * 180.25283 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5742 -0.1173 11 6 3.5734 -3.3831 1.0319 12 6 4.3459 -2.9644 2.2562 13 7 4.0020 -2.0360 3.1130 14 6 4.9896 -2.0102 4.0366 15 6 5.0637 -1.1212 5.2221 16 8 4.1786 -0.3181 5.4348 17 8 6.1128 -1.2051 6.0620 18 7 5.8665 -2.9149 3.6895 19 8 5.5091 -3.4740 2.6741 20 6 3.5648 -3.1829 -1.3811 21 6 4.2223 -2.4708 -2.5350 22 6 5.3905 -2.9766 -3.0737 23 6 5.9850 -2.3164 -4.1379 24 6 5.3849 -1.1614 -4.6162 25 6 4.2171 -0.7157 -4.0272 26 7 3.6769 -1.3721 -3.0189 27 1 -0.4850 0.8401 0.0004 28 1 3.8753 -0.7567 0.9287 29 1 3.8746 -0.6074 -0.8450 30 1 2.5079 -3.2329 1.2055 31 1 3.7629 -4.4365 0.8254 32 1 6.1167 -0.6056 6.8207 33 1 2.4818 -3.0972 -1.4708 34 1 3.8483 -4.2352 -1.3945 35 1 5.8324 -3.8770 -2.6731 36 1 6.8958 -2.6906 -4.5814 37 1 5.8224 -0.6194 -5.4416 38 1 3.7414 0.1808 -4.3965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:22 Heat of formation + Delta-G solvation = 48.351031 kcal Electronic energy + Delta-G solvation = -26365.133776 eV Core-core repulsion = 22405.511365 eV Total energy + Delta-G solvation = -3959.622411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.59291 -40.22032 -39.90478 -37.31490 -36.42720 -35.50932 -33.01287 -32.40618 -32.06691 -31.20367 -28.23002 -27.29061 -26.34300 -24.53392 -23.20633 -23.03775 -22.28786 -21.44912 -19.99537 -18.23722 -18.14332 -17.83394 -17.10851 -16.56639 -16.44654 -15.88727 -15.75309 -15.30360 -15.15222 -14.54234 -14.45955 -13.88699 -13.80869 -13.22834 -13.08737 -12.70069 -12.47638 -12.34064 -12.00607 -11.78549 -11.61526 -11.47366 -11.22469 -11.19395 -11.13047 -10.92786 -10.86073 -10.36141 -10.11872 -9.91060 -9.57107 -9.47790 -8.89643 -8.73045 -8.44812 -7.58128 -5.99886 -3.97162 0.74733 1.37791 1.59273 1.69531 2.18898 2.79704 2.87836 3.39241 3.44896 3.50333 3.87406 4.07182 4.34083 4.52976 4.64273 4.92415 5.02544 5.10636 5.12208 5.31425 5.34328 5.40090 5.43011 5.61486 5.71258 5.89029 5.95925 5.99456 6.09848 6.12162 6.28769 6.40773 6.55688 6.75373 6.99374 7.14705 7.41570 7.53958 7.71302 7.82340 8.10387 8.45907 8.49212 8.95277 9.65155 11.13231 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004846 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.399430 B = 5776.700743 C = 7156.090355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.086 3.914 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.148 3.852 10 N -0.528 5.528 11 C 0.139 3.861 12 C 0.225 3.775 13 N -0.416 5.416 14 C 0.135 3.865 15 C 0.583 3.417 16 O -0.465 6.465 17 O -0.497 6.497 18 N -0.333 5.333 19 O 0.104 5.896 20 C 0.105 3.895 21 C 0.152 3.848 22 C -0.161 4.161 23 C -0.085 4.085 24 C -0.185 4.185 25 C 0.096 3.904 26 N -0.446 5.446 27 H 0.262 0.738 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.424 0.576 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.155 -7.970 -0.964 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.117 4.117 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.022 3.978 10 N -0.254 5.254 11 C 0.009 3.991 12 C 0.003 3.997 13 N -0.149 5.149 14 C -0.135 4.135 15 C 0.420 3.580 16 O -0.347 6.347 17 O -0.309 6.309 18 N -0.038 5.038 19 O 0.032 5.968 20 C -0.022 4.022 21 C 0.014 3.986 22 C -0.182 4.182 23 C -0.111 4.111 24 C -0.206 4.206 25 C -0.061 4.061 26 N -0.155 5.155 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.284 0.716 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.924 -7.284 -0.098 14.836 hybrid contribution 0.367 1.258 -0.076 1.312 sum 13.292 -6.027 -0.175 14.595 Atomic orbital electron populations 1.69895 1.06227 1.26780 1.50732 1.24711 0.94429 0.98728 0.93797 0.86882 0.80442 0.84323 0.78187 1.20216 1.21575 1.19508 1.21240 0.89576 0.94429 1.51822 0.90748 1.20388 0.95706 0.84203 0.97482 1.62450 1.58939 1.04830 0.99138 1.20638 0.97354 0.97636 0.83474 1.29095 0.84077 0.88922 0.97565 1.72285 1.23902 1.16727 1.02029 1.24017 0.91256 0.99505 0.98767 1.18396 0.79557 0.79877 0.80150 1.90996 1.38087 1.33947 1.71643 1.84528 1.44768 1.62818 1.38799 1.75003 1.20580 1.08688 0.99492 1.85322 1.33977 1.48421 1.29116 1.20882 1.00417 0.95193 0.85750 1.21117 0.91498 0.91277 0.94754 1.21945 0.96732 1.01924 0.97588 1.21465 0.99133 0.94808 0.95694 1.22077 0.98150 0.98127 1.02196 1.22827 0.92762 0.98697 0.91863 1.67770 1.32509 1.06129 1.09103 0.92861 0.95371 0.94104 0.87005 0.87922 0.71643 0.90096 0.90372 0.85052 0.85502 0.85544 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 3 Si 0.87 22.79 27.38 -169.99 -4.65 18.14 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 6 H -0.27 -7.07 6.68 56.52 0.38 -6.69 16 7 C -0.53 -14.12 7.89 -34.44 -0.27 -14.39 16 8 H 0.07 2.05 6.20 -52.48 -0.33 1.73 16 9 C 0.15 3.45 3.77 -4.98 -0.02 3.43 16 10 N -0.53 -9.61 4.65 -238.97 -1.11 -10.72 16 11 C 0.14 2.18 5.44 -4.98 -0.03 2.16 16 12 C 0.22 3.82 7.33 -13.00 -0.10 3.73 16 13 N -0.42 -8.34 10.93 -9.94 -0.11 -8.45 16 14 C 0.14 2.43 8.04 -156.18 -1.26 1.17 16 15 C 0.58 9.38 8.37 34.90 0.29 9.67 16 16 O -0.47 -8.82 17.89 -19.18 -0.34 -9.16 16 17 O -0.50 -5.64 13.44 -40.34 -0.54 -6.18 16 18 N -0.33 -5.49 12.20 30.93 0.38 -5.11 16 19 O 0.10 1.61 11.29 17.97 0.20 1.81 16 20 C 0.11 1.71 5.08 -4.98 -0.03 1.69 16 21 C 0.15 2.55 5.70 -82.59 -0.47 2.07 16 22 C -0.16 -2.15 9.72 -39.44 -0.38 -2.54 16 23 C -0.08 -1.02 10.18 -39.28 -0.40 -1.42 16 24 C -0.19 -2.34 10.11 -39.44 -0.40 -2.74 16 25 C 0.10 1.52 11.18 -17.55 -0.20 1.33 16 26 N -0.45 -8.55 8.80 -9.47 -0.08 -8.63 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.03 0.72 6.31 -51.93 -0.33 0.39 16 29 H 0.04 1.01 5.41 -51.93 -0.28 0.73 16 30 H 0.11 2.01 6.24 -51.93 -0.32 1.69 16 31 H 0.10 1.12 7.81 -51.93 -0.41 0.71 16 32 H 0.42 2.32 9.11 45.56 0.42 2.73 16 33 H 0.08 1.54 6.51 -51.93 -0.34 1.20 16 34 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.15 2.11 8.06 -52.48 -0.42 1.68 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -36.01 335.59 -6.62 -42.63 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -2.84 Total: 0.64 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -3.35 Total: 6.55 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.15 Total: -59.49 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.68 Total: -13.53 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.65 Total: 18.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.01 -6.62 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.978 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds