Wall clock time and date at job start Tue Mar 31 2020 12:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47013 * 270.00401 * 3 2 1 5 5 H 1.48498 * 109.47317 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.47255 * 150.00151 * 3 2 1 7 7 C 1.37875 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00076 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47115 * 184.79255 * 9 7 2 11 11 C 1.46898 * 111.00337 * 297.82790 * 10 9 7 12 12 C 1.50699 * 109.47449 * 288.13558 * 11 10 9 13 13 N 1.30927 * 126.44319 * 89.99478 * 12 11 10 14 14 C 1.35244 * 105.58229 * 180.02562 * 13 12 11 15 15 C 1.48364 * 126.41167 * 180.02562 * 14 13 12 16 16 O 1.21394 * 120.00171 * 0.02562 * 15 14 13 17 17 O 1.34645 * 119.99930 * 180.02562 * 15 14 13 18 18 N 1.30689 * 107.17944 * 0.02562 * 14 13 12 19 19 O 1.21294 * 110.10582 * 359.70902 * 18 14 13 20 20 C 1.46900 * 110.99807 * 61.78812 * 10 9 7 21 21 C 1.50695 * 109.47553 * 66.04400 * 20 10 9 22 22 C 1.38223 * 119.62248 * 94.97828 * 21 20 10 23 23 C 1.38631 * 119.16506 * 179.79318 * 22 21 20 24 24 C 1.38672 * 118.41438 * 0.47027 * 23 22 21 25 25 C 1.38178 * 119.16775 * 359.51082 * 24 23 22 26 26 N 1.31865 * 119.61533 * 275.00226 * 21 20 10 27 27 H 0.97001 * 119.99757 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47297 * 64.79650 * 9 7 2 29 29 H 1.08999 * 109.47359 * 304.79947 * 9 7 2 30 30 H 1.08998 * 109.46840 * 48.14015 * 11 10 9 31 31 H 1.09003 * 109.47088 * 168.13300 * 11 10 9 32 32 H 0.96697 * 116.99825 * 180.02562 * 17 15 14 33 33 H 1.09004 * 109.46952 * 306.03668 * 20 10 9 34 34 H 1.08998 * 109.47120 * 186.04459 * 20 10 9 35 35 H 1.07999 * 120.41723 * 0.02562 * 22 21 20 36 36 H 1.07993 * 120.79210 * 180.23714 * 23 22 21 37 37 H 1.07999 * 120.41653 * 179.78182 * 24 23 22 38 38 H 1.08003 * 119.61849 * 180.25283 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5742 -0.1173 11 6 3.5734 -3.3831 1.0319 12 6 4.3459 -2.9644 2.2562 13 7 4.0020 -2.0360 3.1130 14 6 4.9896 -2.0102 4.0366 15 6 5.0637 -1.1212 5.2221 16 8 4.1786 -0.3181 5.4348 17 8 6.1128 -1.2051 6.0620 18 7 5.8665 -2.9149 3.6895 19 8 5.5091 -3.4740 2.6741 20 6 3.5648 -3.1829 -1.3811 21 6 4.2223 -2.4708 -2.5350 22 6 5.3905 -2.9766 -3.0737 23 6 5.9850 -2.3164 -4.1379 24 6 5.3849 -1.1614 -4.6162 25 6 4.2171 -0.7157 -4.0272 26 7 3.6769 -1.3721 -3.0189 27 1 -0.4850 0.8401 0.0004 28 1 3.8753 -0.7567 0.9287 29 1 3.8746 -0.6074 -0.8450 30 1 2.5079 -3.2329 1.2055 31 1 3.7629 -4.4365 0.8254 32 1 6.1167 -0.6056 6.8207 33 1 2.4818 -3.0972 -1.4708 34 1 3.8483 -4.2352 -1.3945 35 1 5.8324 -3.8770 -2.6731 36 1 6.8958 -2.6906 -4.5814 37 1 5.8224 -0.6194 -5.4416 38 1 3.7414 0.1808 -4.3965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:21 Heat of formation + Delta-G solvation = 18.080578 kcal Electronic energy + Delta-G solvation = -26366.446401 eV Core-core repulsion = 22405.511365 eV Total energy + Delta-G solvation = -3960.935036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.93341 -41.42342 -41.02713 -38.76212 -37.57536 -36.87900 -34.61284 -34.18558 -33.15232 -32.46619 -30.03189 -28.58185 -27.64555 -26.10393 -24.55952 -24.19670 -23.67300 -22.63584 -21.51736 -19.56616 -19.43265 -19.23675 -18.92625 -17.84058 -17.54373 -17.06796 -16.95839 -16.63493 -16.56420 -16.07250 -16.01700 -15.55570 -14.97726 -14.53270 -14.37895 -14.19459 -13.90682 -13.56985 -13.42648 -13.23272 -12.96518 -12.92680 -12.83540 -12.76755 -12.46439 -12.33511 -12.26385 -12.23534 -11.90094 -11.69116 -11.36903 -10.71050 -10.58531 -10.04371 -9.81763 -9.16441 -8.23939 -6.19796 -0.55403 0.23849 0.41349 0.60230 1.04122 1.27609 1.29681 1.37123 1.48059 1.54890 2.35761 2.55771 2.89767 3.14052 3.17268 3.44942 3.70161 3.91445 3.97556 4.13107 4.16066 4.37222 4.39062 4.43515 4.58889 4.66277 4.75991 4.82801 4.97217 5.07610 5.11635 5.13087 5.17437 5.41297 5.42193 5.54782 5.93876 5.99417 6.17929 6.28641 6.52918 6.79106 6.80886 7.38575 7.44134 8.92310 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004846 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.399430 B = 5776.700743 C = 7156.090355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.029 3.971 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.166 3.834 10 N -0.520 5.520 11 C 0.139 3.861 12 C 0.231 3.769 13 N -0.465 5.465 14 C 0.118 3.882 15 C 0.592 3.408 16 O -0.504 6.504 17 O -0.478 6.478 18 N -0.324 5.324 19 O 0.128 5.872 20 C 0.107 3.893 21 C 0.119 3.881 22 C -0.152 4.152 23 C -0.080 4.080 24 C -0.173 4.173 25 C 0.065 3.935 26 N -0.506 5.506 27 H 0.259 0.741 28 H 0.007 0.993 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.449 0.551 33 H 0.043 0.957 34 H 0.131 0.869 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.715 -9.862 -1.808 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.168 4.168 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.038 3.962 10 N -0.244 5.244 11 C 0.009 3.991 12 C 0.011 3.989 13 N -0.200 5.200 14 C -0.153 4.153 15 C 0.431 3.569 16 O -0.389 6.389 17 O -0.293 6.293 18 N -0.026 5.026 19 O 0.053 5.947 20 C -0.020 4.020 21 C -0.019 4.019 22 C -0.172 4.172 23 C -0.106 4.106 24 C -0.193 4.193 25 C -0.092 4.092 26 N -0.216 5.216 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.181 0.819 32 H 0.314 0.686 33 H 0.061 0.939 34 H 0.149 0.851 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.177 0.823 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.538 -9.177 -0.911 18.936 hybrid contribution -0.610 1.700 0.158 1.813 sum 15.928 -7.478 -0.753 17.612 Atomic orbital electron populations 1.70008 1.07510 1.27139 1.53807 1.25384 0.94988 1.01638 0.94828 0.86129 0.79148 0.81599 0.78381 1.19323 1.21816 1.19720 1.21530 0.91501 0.93192 1.48142 0.92577 1.19977 0.92925 0.87603 0.95706 1.62364 1.58292 1.02836 1.00919 1.20839 0.95659 1.00431 0.82122 1.29171 0.84248 0.88256 0.97272 1.72254 1.25666 1.18413 1.03622 1.24303 0.91146 1.00369 0.99438 1.18275 0.79754 0.78864 0.80038 1.90980 1.39751 1.35519 1.72609 1.84483 1.42345 1.63282 1.39157 1.74960 1.20018 1.08103 0.99483 1.85312 1.33147 1.47661 1.28595 1.21020 0.98279 0.97927 0.84747 1.21274 0.93377 0.91610 0.95621 1.22267 0.95093 1.02602 0.97254 1.21984 0.99972 0.93872 0.94770 1.22405 0.96508 0.98306 1.02101 1.23005 0.94576 0.99222 0.92361 1.67606 1.34822 1.08021 1.11106 0.93146 0.97450 0.95174 0.89658 0.81874 0.68553 0.93911 0.85116 0.81697 0.81340 0.82309 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.03 1.76 5.47 84.65 0.46 2.22 16 3 Si 0.92 48.56 27.38 68.60 1.88 50.44 16 4 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -15.35 7.11 99.48 0.71 -14.65 16 6 H -0.27 -14.30 6.68 99.48 0.66 -13.64 16 7 C -0.50 -27.71 7.89 25.60 0.20 -27.50 16 8 H 0.06 3.24 6.20 -2.91 -0.02 3.22 16 9 C 0.17 7.79 3.77 85.56 0.32 8.11 16 10 N -0.52 -18.21 4.65 -909.96 -4.23 -22.44 16 11 C 0.14 4.13 5.44 85.56 0.47 4.60 16 12 C 0.23 7.57 7.33 88.36 0.65 8.22 16 13 N -0.47 -18.71 10.93 -302.77 -3.31 -22.02 16 14 C 0.12 4.15 8.04 137.29 1.10 5.25 16 15 C 0.59 18.71 8.37 70.52 0.59 19.30 16 16 O -0.50 -19.30 17.89 20.18 0.36 -18.94 16 17 O -0.48 -9.88 13.44 -55.54 -0.75 -10.63 16 18 N -0.32 -10.07 12.20 -59.33 -0.72 -10.80 16 19 O 0.13 3.65 11.29 74.35 0.84 4.49 16 20 C 0.11 3.33 5.08 85.56 0.43 3.77 16 21 C 0.12 3.81 5.70 42.55 0.24 4.05 16 22 C -0.15 -3.47 9.72 22.36 0.22 -3.25 16 23 C -0.08 -1.56 10.18 22.47 0.23 -1.33 16 24 C -0.17 -3.88 10.11 22.36 0.23 -3.66 16 25 C 0.07 2.05 11.18 84.67 0.95 2.99 16 26 N -0.51 -19.51 8.80 -183.89 -1.62 -21.13 16 27 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.01 0.39 6.31 -2.39 -0.02 0.37 16 29 H 0.03 1.51 5.41 -2.39 -0.01 1.50 16 30 H 0.09 3.09 6.24 -2.39 -0.01 3.07 16 31 H 0.16 2.84 7.81 -2.39 -0.02 2.82 16 32 H 0.45 3.86 9.11 -74.06 -0.67 3.18 16 33 H 0.04 1.65 6.51 -2.38 -0.02 1.64 16 34 H 0.13 2.60 7.76 -2.39 -0.02 2.58 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -83.82 335.59 -0.73 -84.56 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 0.43 Total: 3.31 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 6.09 Total: 22.78 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -9.58 Total: -136.00 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.45 Total: -25.08 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.88 Total: 50.44 kcal Total: -83.82 -0.73 -84.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.638 kcal (2) G-P(sol) polarization free energy of solvation -83.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds