Wall clock time and date at job start Tue Mar 31 2020 12:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 C 1.52990 * 115.54984 * 162.61808 * 3 2 1 5 5 C 1.50696 * 109.47673 * 40.48872 * 4 3 2 6 6 O 1.21280 * 119.99400 * 5.72360 * 5 4 3 7 7 N 1.34770 * 120.00425 * 185.72083 * 5 4 3 8 8 C 1.38486 * 119.99978 * 186.26461 * 7 5 4 9 9 C 1.39233 * 126.42943 * 129.11257 * 8 7 5 10 10 C 1.46746 * 126.51622 * 0.04701 * 9 8 7 11 11 O 1.21599 * 119.99933 * 359.97438 * 10 9 8 12 12 O 1.34830 * 120.00255 * 179.97438 * 10 9 8 13 13 C 1.41481 * 106.97140 * 180.02562 * 9 8 7 14 14 N 1.30302 * 108.16542 * 359.74528 * 13 9 8 15 15 N 1.34772 * 126.43431 * 309.13857 * 8 7 5 16 16 C 1.46497 * 125.74056 * 359.95558 * 15 8 7 17 17 C 1.50703 * 109.46762 * 104.36641 * 16 15 8 18 18 H 1.07996 * 119.99825 * 0.65818 * 17 16 15 19 19 C 1.37880 * 119.99435 * 180.38265 * 17 16 15 20 20 N 1.31519 * 119.99491 * 173.85574 * 19 17 16 21 21 Si 1.86793 * 120.00338 * 353.86058 * 19 17 16 22 22 H 1.48501 * 109.47288 * 94.54944 * 21 19 17 23 23 H 1.48508 * 109.46998 * 214.54676 * 21 19 17 24 24 H 1.48497 * 109.47200 * 334.54619 * 21 19 17 25 25 C 1.53000 * 117.51214 * 308.31899 * 3 2 1 26 26 C 1.53002 * 60.00280 * 107.48069 * 25 3 2 27 27 H 1.09002 * 109.47340 * 280.49044 * 4 3 2 28 28 H 1.09004 * 109.47277 * 160.49494 * 4 3 2 29 29 H 0.97002 * 120.00412 * 6.26780 * 7 5 4 30 30 H 0.96700 * 117.00286 * 179.97438 * 12 10 9 31 31 H 1.07998 * 125.91185 * 179.97438 * 13 9 8 32 32 H 1.08998 * 109.47196 * 344.36321 * 16 15 8 33 33 H 1.09004 * 109.47067 * 224.35998 * 16 15 8 34 34 H 0.97004 * 119.99887 * 180.02562 * 20 19 17 35 35 H 1.09009 * 117.49394 * 214.96492 * 25 3 2 36 36 H 1.09000 * 117.50380 * 359.97438 * 25 3 2 37 37 H 1.09003 * 117.49544 * 252.51497 * 26 25 3 38 38 H 1.08995 * 117.52376 * 107.47034 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2674 1.3182 -0.4123 5 6 2.5087 2.4708 0.1934 6 8 1.6011 2.2584 0.9692 7 7 2.8388 3.7376 -0.1270 8 6 2.2313 4.7975 0.5252 9 6 2.8744 5.8739 1.1305 10 6 4.3227 6.1006 1.1973 11 8 5.0871 5.3017 0.6913 12 8 4.8058 7.1947 1.8197 13 6 1.8661 6.7080 1.6684 14 7 0.7092 6.1722 1.3991 15 7 0.9067 4.9805 0.6936 16 6 -0.1487 4.0851 0.2135 17 6 -0.7005 3.2932 1.3708 18 1 -0.3120 3.4496 2.3662 19 6 -1.7054 2.3730 1.1595 20 7 -2.1035 1.5966 2.1436 21 14 -2.5011 2.2289 -0.5243 22 1 -1.8276 1.1565 -1.3000 23 1 -3.9396 1.8958 -0.3652 24 1 -2.3689 3.5197 -1.2464 25 6 3.3152 -0.8404 1.0646 26 6 3.3151 -1.2973 -0.3955 27 1 3.2552 1.4062 -1.4987 28 1 4.2980 1.3353 -0.0580 29 1 3.5019 3.9070 -0.8144 30 1 5.7668 7.3008 1.8384 31 1 2.0273 7.6309 2.2057 32 1 0.2639 3.4029 -0.5298 33 1 -0.9474 4.6740 -0.2375 34 1 -2.8102 0.9489 1.9949 35 1 4.2504 -0.4550 1.4712 36 1 2.6905 -1.3941 1.7656 37 1 2.6901 -2.1518 -0.6554 38 1 4.2497 -1.2125 -0.9500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242543.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:31 Heat of formation + Delta-G solvation = 28.075843 kcal Electronic energy + Delta-G solvation = -27277.707604 eV Core-core repulsion = 23317.205995 eV Total energy + Delta-G solvation = -3960.501609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32065 -39.68895 -39.25631 -37.75631 -35.77854 -34.88420 -34.46263 -33.63144 -31.71632 -30.30898 -28.72942 -27.84010 -24.09649 -23.18118 -22.58582 -22.56599 -21.40837 -20.50241 -19.43452 -17.87260 -17.63573 -17.15436 -16.97682 -16.30692 -15.93532 -15.46565 -15.27195 -14.81470 -14.47950 -14.21397 -13.65381 -13.56174 -13.46253 -13.41809 -13.01220 -12.72993 -12.35972 -12.31139 -12.17683 -11.92575 -11.54330 -11.51265 -11.35740 -11.02930 -10.92772 -10.60720 -10.43063 -10.26145 -10.12509 -10.01356 -9.82819 -9.53289 -9.36458 -8.53121 -8.38728 -8.12271 -5.98951 -3.94826 1.63032 2.48966 2.68175 2.86356 3.09141 3.28487 3.29640 3.33375 3.45304 3.48380 3.53318 3.67114 4.07211 4.28257 4.44736 4.48442 4.72775 4.82030 5.06516 5.27847 5.32907 5.33780 5.40830 5.47561 5.50174 5.59768 5.67463 5.82939 6.00545 6.04604 6.22054 6.40953 6.56827 6.68482 6.92967 7.35698 7.45513 7.54706 8.11458 8.24630 8.39062 8.44888 8.51343 9.05627 9.57977 11.14222 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.006673 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.249030 B = 4194.907243 C = 6199.535823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C 0.209 3.791 3 C -0.023 4.023 4 C -0.090 4.090 5 C 0.473 3.527 6 O -0.422 6.422 7 N -0.656 5.656 8 C 0.390 3.610 9 C -0.325 4.325 10 C 0.569 3.431 11 O -0.544 6.544 12 O -0.516 6.516 13 C 0.093 3.907 14 N -0.273 5.273 15 N -0.299 5.299 16 C 0.237 3.763 17 C -0.505 4.505 18 H 0.079 0.921 19 C 0.103 3.897 20 N -0.876 5.876 21 Si 0.853 3.147 22 H -0.257 1.257 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.144 4.144 26 C -0.149 4.149 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.421 0.579 30 H 0.406 0.594 31 H 0.191 0.809 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.910 1.162 -6.981 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.046 5.046 2 C -0.109 4.109 3 C -0.027 4.027 4 C -0.131 4.131 5 C 0.257 3.743 6 O -0.286 6.286 7 N -0.311 5.311 8 C 0.158 3.842 9 C -0.341 4.341 10 C 0.417 3.583 11 O -0.436 6.436 12 O -0.326 6.326 13 C -0.095 4.095 14 N -0.094 5.094 15 N -0.077 5.077 16 C 0.119 3.881 17 C -0.543 4.543 18 H 0.097 0.903 19 C -0.102 4.102 20 N -0.513 5.513 21 Si 0.681 3.319 22 H -0.182 1.182 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.182 4.182 26 C -0.187 4.187 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.259 0.741 30 H 0.264 0.736 31 H 0.208 0.792 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.682 0.515 -6.405 15.116 hybrid contribution 1.738 0.035 -1.179 2.100 sum 15.420 0.550 -7.583 17.193 Atomic orbital electron populations 1.81347 1.11391 1.05763 1.06098 1.27146 0.92817 0.95451 0.95507 1.17703 0.83634 0.92972 1.08399 1.21132 1.00086 0.89362 1.02523 1.21073 0.85255 0.83246 0.84730 1.91320 1.24141 1.82934 1.30239 1.42683 1.43674 1.03253 1.41462 1.17811 0.84497 0.88409 0.93488 1.18554 0.90659 1.03859 1.21054 1.19490 0.87845 0.77464 0.73532 1.90815 1.59622 1.46100 1.47060 1.84589 1.30446 1.44802 1.72780 1.23875 0.88556 0.99391 0.97689 1.77305 1.22302 0.95335 1.14411 1.49394 1.04134 1.16286 1.37933 1.20203 0.83887 0.87093 0.96935 1.20593 1.19424 1.20630 0.93668 0.90296 1.24439 0.95940 0.94055 0.95756 1.69830 1.28927 1.20947 1.31634 0.87218 0.79629 0.78615 0.86472 1.18157 1.21172 1.20268 1.23203 1.01852 1.01069 0.92083 1.23189 1.01836 0.95181 0.98517 0.87888 0.86691 0.74058 0.73640 0.79172 0.94584 0.93892 0.92721 0.87145 0.87743 0.87868 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -8.81 16.12 42.15 0.68 -8.13 16 2 C 0.21 4.03 12.44 -20.76 -0.26 3.77 16 3 C -0.02 -0.30 2.10 -157.29 -0.33 -0.63 16 4 C -0.09 -1.00 5.82 -27.89 -0.16 -1.16 16 5 C 0.47 7.98 6.61 -10.99 -0.07 7.91 16 6 O -0.42 -9.57 9.68 5.56 0.05 -9.52 16 7 N -0.66 -10.39 4.62 -11.08 -0.05 -10.44 16 8 C 0.39 7.46 6.91 -153.42 -1.06 6.40 16 9 C -0.33 -5.63 6.15 -104.86 -0.64 -6.27 16 10 C 0.57 8.44 8.31 34.17 0.28 8.72 16 11 O -0.54 -8.56 16.82 -19.34 -0.33 -8.89 16 12 O -0.52 -5.75 13.28 -40.84 -0.54 -6.29 16 13 C 0.09 1.60 11.86 -16.97 -0.20 1.40 16 14 N -0.27 -5.85 12.47 30.88 0.39 -5.46 16 15 N -0.30 -6.69 3.50 -61.12 -0.21 -6.90 16 16 C 0.24 5.92 4.30 -5.19 -0.02 5.89 16 17 C -0.51 -14.75 7.48 -34.44 -0.26 -15.01 16 18 H 0.08 2.65 8.06 -52.49 -0.42 2.22 16 19 C 0.10 3.05 5.00 -17.82 -0.09 2.96 16 20 N -0.88 -27.66 13.96 55.43 0.77 -26.88 16 21 Si 0.85 22.38 26.43 -169.99 -4.49 17.89 16 22 H -0.26 -6.65 6.39 56.52 0.36 -6.29 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -6.94 6.40 56.52 0.36 -6.58 16 25 C -0.14 -1.51 9.86 -26.73 -0.26 -1.77 16 26 C -0.15 -1.27 9.93 -26.73 -0.27 -1.54 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.11 0.90 7.95 -51.93 -0.41 0.48 16 29 H 0.42 5.12 8.47 -40.82 -0.35 4.78 16 30 H 0.41 2.49 9.11 45.56 0.42 2.90 16 31 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.04 0.89 6.13 -51.93 -0.32 0.57 16 33 H 0.04 1.10 6.96 -51.93 -0.36 0.74 16 34 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 35 H 0.11 0.92 8.09 -51.92 -0.42 0.50 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -39.92 337.24 -5.19 -45.11 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.19 Total: 3.76 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -3.34 Total: 10.68 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 1.57 Total: -57.83 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.81 Total: -24.70 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.49 Total: 17.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -39.92 -5.19 -45.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242543.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.187 kcal (2) G-P(sol) polarization free energy of solvation -39.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds