Wall clock time and date at job start Tue Mar 31 2020 12:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 C 1.52990 * 115.54984 * 162.61808 * 3 2 1 5 5 C 1.50696 * 109.47673 * 40.48872 * 4 3 2 6 6 O 1.21280 * 119.99400 * 5.72360 * 5 4 3 7 7 N 1.34770 * 120.00425 * 185.72083 * 5 4 3 8 8 C 1.38486 * 119.99978 * 186.26461 * 7 5 4 9 9 C 1.39233 * 126.42943 * 129.11257 * 8 7 5 10 10 C 1.46746 * 126.51622 * 0.04701 * 9 8 7 11 11 O 1.21599 * 119.99933 * 359.97438 * 10 9 8 12 12 O 1.34830 * 120.00255 * 179.97438 * 10 9 8 13 13 C 1.41481 * 106.97140 * 180.02562 * 9 8 7 14 14 N 1.30302 * 108.16542 * 359.74528 * 13 9 8 15 15 N 1.34772 * 126.43431 * 309.13857 * 8 7 5 16 16 C 1.46497 * 125.74056 * 359.95558 * 15 8 7 17 17 C 1.50703 * 109.46762 * 104.36641 * 16 15 8 18 18 H 1.07996 * 119.99825 * 0.65818 * 17 16 15 19 19 C 1.37880 * 119.99435 * 180.38265 * 17 16 15 20 20 N 1.31519 * 119.99491 * 173.85574 * 19 17 16 21 21 Si 1.86793 * 120.00338 * 353.86058 * 19 17 16 22 22 H 1.48501 * 109.47288 * 94.54944 * 21 19 17 23 23 H 1.48508 * 109.46998 * 214.54676 * 21 19 17 24 24 H 1.48497 * 109.47200 * 334.54619 * 21 19 17 25 25 C 1.53000 * 117.51214 * 308.31899 * 3 2 1 26 26 C 1.53002 * 60.00280 * 107.48069 * 25 3 2 27 27 H 1.09002 * 109.47340 * 280.49044 * 4 3 2 28 28 H 1.09004 * 109.47277 * 160.49494 * 4 3 2 29 29 H 0.97002 * 120.00412 * 6.26780 * 7 5 4 30 30 H 0.96700 * 117.00286 * 179.97438 * 12 10 9 31 31 H 1.07998 * 125.91185 * 179.97438 * 13 9 8 32 32 H 1.08998 * 109.47196 * 344.36321 * 16 15 8 33 33 H 1.09004 * 109.47067 * 224.35998 * 16 15 8 34 34 H 0.97004 * 119.99887 * 180.02562 * 20 19 17 35 35 H 1.09009 * 117.49394 * 214.96492 * 25 3 2 36 36 H 1.09000 * 117.50380 * 359.97438 * 25 3 2 37 37 H 1.09003 * 117.49544 * 252.51497 * 26 25 3 38 38 H 1.08995 * 117.52376 * 107.47034 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2674 1.3182 -0.4123 5 6 2.5087 2.4708 0.1934 6 8 1.6011 2.2584 0.9692 7 7 2.8388 3.7376 -0.1270 8 6 2.2313 4.7975 0.5252 9 6 2.8744 5.8739 1.1305 10 6 4.3227 6.1006 1.1973 11 8 5.0871 5.3017 0.6913 12 8 4.8058 7.1947 1.8197 13 6 1.8661 6.7080 1.6684 14 7 0.7092 6.1722 1.3991 15 7 0.9067 4.9805 0.6936 16 6 -0.1487 4.0851 0.2135 17 6 -0.7005 3.2932 1.3708 18 1 -0.3120 3.4496 2.3662 19 6 -1.7054 2.3730 1.1595 20 7 -2.1035 1.5966 2.1436 21 14 -2.5011 2.2289 -0.5243 22 1 -1.8276 1.1565 -1.3000 23 1 -3.9396 1.8958 -0.3652 24 1 -2.3689 3.5197 -1.2464 25 6 3.3152 -0.8404 1.0646 26 6 3.3151 -1.2973 -0.3955 27 1 3.2552 1.4062 -1.4987 28 1 4.2980 1.3353 -0.0580 29 1 3.5019 3.9070 -0.8144 30 1 5.7668 7.3008 1.8384 31 1 2.0273 7.6309 2.2057 32 1 0.2639 3.4029 -0.5298 33 1 -0.9474 4.6740 -0.2375 34 1 -2.8102 0.9489 1.9949 35 1 4.2504 -0.4550 1.4712 36 1 2.6905 -1.3941 1.7656 37 1 2.6901 -2.1518 -0.6554 38 1 4.2497 -1.2125 -0.9500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242543.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:30 Heat of formation + Delta-G solvation = -4.086386 kcal Electronic energy + Delta-G solvation = -27279.102263 eV Core-core repulsion = 23317.205995 eV Total energy + Delta-G solvation = -3961.896268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.74336 -40.88864 -40.42149 -38.85064 -36.84138 -36.33168 -35.85506 -35.60102 -33.69554 -31.47260 -30.02635 -29.63230 -25.60882 -24.50135 -24.11023 -23.29148 -22.78882 -21.79136 -20.88295 -19.32858 -19.03349 -18.75532 -18.38626 -17.53560 -17.21524 -16.70076 -16.55127 -16.32697 -15.78108 -15.72987 -15.19124 -14.96717 -14.79403 -14.64769 -14.53683 -14.18627 -14.04748 -13.91768 -13.54639 -13.19679 -13.03532 -12.93799 -12.41864 -12.34625 -12.29845 -12.24113 -12.13951 -11.83778 -11.51040 -11.42574 -11.27836 -11.01237 -10.80287 -10.63341 -10.10828 -9.55654 -8.29907 -6.27813 0.26978 1.09329 1.17356 1.22677 1.30698 1.34660 1.62921 1.93743 2.04736 2.14870 2.25411 2.29780 2.44098 2.99902 3.06220 3.25541 3.56387 3.67598 3.72536 3.98257 4.06653 4.16118 4.35799 4.38806 4.63863 4.68396 4.72494 4.84327 4.87326 4.91474 4.99294 5.10275 5.28194 5.31930 5.53070 5.74960 5.83018 6.22609 6.29251 6.61028 6.71141 7.02193 7.21557 7.23104 7.28794 8.86997 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.006673 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.249030 B = 4194.907243 C = 6199.535823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.232 3.768 3 C -0.064 4.064 4 C -0.075 4.075 5 C 0.465 3.535 6 O -0.491 6.491 7 N -0.643 5.643 8 C 0.380 3.620 9 C -0.326 4.326 10 C 0.580 3.420 11 O -0.550 6.550 12 O -0.503 6.503 13 C 0.108 3.892 14 N -0.322 5.322 15 N -0.331 5.331 16 C 0.257 3.743 17 C -0.489 4.489 18 H 0.020 0.980 19 C 0.059 3.941 20 N -0.924 5.924 21 Si 0.911 3.089 22 H -0.253 1.253 23 H -0.288 1.288 24 H -0.257 1.257 25 C -0.148 4.148 26 C -0.103 4.103 27 H 0.141 0.859 28 H 0.162 0.838 29 H 0.439 0.561 30 H 0.432 0.568 31 H 0.232 0.768 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.258 0.742 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.347 1.865 -9.192 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.084 4.084 3 C -0.068 4.068 4 C -0.115 4.115 5 C 0.253 3.747 6 O -0.360 6.360 7 N -0.300 5.300 8 C 0.150 3.850 9 C -0.341 4.341 10 C 0.427 3.573 11 O -0.443 6.443 12 O -0.316 6.316 13 C -0.079 4.079 14 N -0.143 5.143 15 N -0.110 5.110 16 C 0.138 3.862 17 C -0.527 4.527 18 H 0.038 0.962 19 C -0.141 4.141 20 N -0.564 5.564 21 Si 0.736 3.264 22 H -0.178 1.178 23 H -0.214 1.214 24 H -0.181 1.181 25 C -0.186 4.186 26 C -0.140 4.140 27 H 0.159 0.841 28 H 0.179 0.821 29 H 0.282 0.718 30 H 0.294 0.706 31 H 0.248 0.752 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.214 1.266 -8.652 20.204 hybrid contribution 0.616 -0.089 -0.338 0.709 sum 18.831 1.177 -8.990 20.900 Atomic orbital electron populations 1.81312 1.14548 1.08961 1.09562 1.28448 0.94526 0.92658 0.92761 1.18286 0.80176 0.96165 1.12218 1.21331 1.00707 0.85053 1.04393 1.22305 0.84575 0.84415 0.83432 1.91315 1.27388 1.83807 1.33458 1.42819 1.43316 1.02473 1.41375 1.18324 0.83646 0.89582 0.93485 1.18868 0.92374 1.02996 1.19908 1.18986 0.86568 0.78156 0.73639 1.90812 1.59476 1.46632 1.47396 1.84516 1.32926 1.42685 1.71470 1.24580 0.87356 0.99944 0.96022 1.77229 1.24815 0.95920 1.16311 1.49049 1.04778 1.16947 1.40270 1.19622 0.84647 0.86875 0.95092 1.20463 1.18801 1.20827 0.92570 0.96198 1.25083 0.96446 0.93552 0.99057 1.69989 1.30037 1.22323 1.34019 0.86294 0.78188 0.79389 0.82526 1.17766 1.21441 1.18121 1.23352 1.01973 1.00366 0.92950 1.23412 1.02274 0.91620 0.96725 0.84069 0.82070 0.71836 0.70598 0.75205 0.93952 0.94631 0.93240 0.84197 0.90386 0.88272 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -23.26 16.12 20.01 0.32 -22.94 16 2 C 0.23 9.14 12.44 89.44 1.11 10.25 16 3 C -0.06 -1.51 2.10 -53.98 -0.11 -1.62 16 4 C -0.07 -1.34 5.82 29.84 0.17 -1.17 16 5 C 0.47 15.06 6.61 87.66 0.58 15.64 16 6 O -0.49 -22.88 9.68 -3.03 -0.03 -22.91 16 7 N -0.64 -19.13 4.62 -307.35 -1.42 -20.55 16 8 C 0.38 14.27 6.91 132.54 0.92 15.18 16 9 C -0.33 -10.65 6.15 -20.02 -0.12 -10.77 16 10 C 0.58 15.15 8.31 70.05 0.58 15.73 16 11 O -0.55 -15.16 16.82 19.51 0.33 -14.83 16 12 O -0.50 -9.01 13.28 -57.42 -0.76 -9.77 16 13 C 0.11 3.60 11.86 85.72 1.02 4.62 16 14 N -0.32 -14.01 12.47 -56.22 -0.70 -14.71 16 15 N -0.33 -15.14 3.50 -347.29 -1.21 -16.35 16 16 C 0.26 13.29 4.30 85.63 0.37 13.66 16 17 C -0.49 -30.23 7.48 25.60 0.19 -30.03 16 18 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 19 C 0.06 3.67 5.00 84.65 0.42 4.10 16 20 N -0.92 -62.15 13.96 21.45 0.30 -61.85 16 21 Si 0.91 48.31 26.43 68.60 1.81 50.12 16 22 H -0.25 -13.24 6.39 99.48 0.64 -12.61 16 23 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16 24 H -0.26 -12.57 6.40 99.48 0.64 -11.94 16 25 C -0.15 -2.72 9.86 30.59 0.30 -2.42 16 26 C -0.10 -1.29 9.93 30.60 0.30 -0.98 16 27 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.16 1.46 7.95 -2.38 -0.02 1.44 16 29 H 0.44 9.24 8.47 -92.71 -0.79 8.45 16 30 H 0.43 3.17 9.11 -74.06 -0.67 2.50 16 31 H 0.23 5.38 8.06 -2.91 -0.02 5.36 16 32 H 0.04 2.13 6.13 -2.39 -0.01 2.12 16 33 H 0.04 1.87 6.96 -2.39 -0.02 1.85 16 34 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 35 H 0.14 1.72 8.09 -2.38 -0.02 1.70 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -98.66 337.24 3.92 -94.74 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -0.44 Total: 6.87 kcal Atomic # 6 Polarization: 26.45 SS G_CDS: 5.73 Total: 32.18 kcal Atomic # 7 Polarization: -133.69 SS G_CDS: -2.71 Total: -136.40 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.46 Total: -47.51 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.81 Total: 50.12 kcal Total: -98.66 3.92 -94.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242543.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.655 kcal (2) G-P(sol) polarization free energy of solvation -98.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds