Wall clock time and date at job start Tue Mar 31 2020 12:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99883 * 2 1 4 4 C 1.50700 * 109.47221 * 270.00033 * 3 2 1 5 5 H 1.08001 * 120.00285 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00353 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99439 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00225 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47328 * 59.99697 * 8 6 4 10 10 H 1.48498 * 109.47344 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47041 * 299.99892 * 8 6 4 12 12 C 1.34775 * 120.00187 * 180.02562 * 2 1 3 13 13 S 1.71198 * 120.00377 * 179.97438 * 12 2 1 14 14 N 1.34785 * 119.99726 * 359.97438 * 12 2 1 15 15 C 1.39687 * 119.99864 * 184.28970 * 14 12 2 16 16 C 1.38761 * 120.13662 * 312.07819 * 15 14 12 17 17 C 1.38130 * 120.04492 * 179.70157 * 16 15 14 18 18 C 1.38412 * 120.31377 * 0.59709 * 17 16 15 19 19 C 1.38012 * 120.26527 * 359.68157 * 18 17 16 20 20 C 1.39249 * 119.95561 * 0.02562 * 19 18 17 21 21 C 1.48374 * 120.15857 * 180.02562 * 20 19 18 22 22 N 1.34071 * 126.68295 * 179.66586 * 21 20 19 23 23 N 1.28980 * 107.26908 * 179.87176 * 22 21 20 24 24 N 1.28731 * 108.95253 * 0.39980 * 23 22 21 25 25 H 0.96999 * 125.33585 * 179.76373 * 24 23 22 26 26 N 1.28872 * 109.32095 * 359.74712 * 24 23 22 27 27 H 1.08996 * 109.46927 * 270.00345 * 1 2 3 28 28 H 1.09001 * 109.47201 * 30.00032 * 1 2 3 29 29 H 1.08998 * 109.47281 * 150.00283 * 1 2 3 30 30 H 1.08995 * 109.47686 * 30.00290 * 3 2 1 31 31 H 1.09009 * 109.46994 * 150.00453 * 3 2 1 32 32 H 0.96995 * 119.99422 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99773 * 4.56405 * 14 12 2 34 34 H 1.08003 * 119.97580 * 359.97438 * 16 15 14 35 35 H 1.08000 * 119.84020 * 180.30211 * 17 16 15 36 36 H 1.07992 * 119.86419 * 179.69977 * 18 17 16 37 37 H 1.08003 * 120.02526 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6177 -0.6731 8 14 3.4388 3.4164 -3.4339 9 1 2.1415 3.5942 -4.1343 10 1 4.1812 4.7025 -3.4340 11 1 4.2412 2.3811 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 16 3.8509 -1.1672 -0.0012 14 7 1.4650 -2.3344 -0.0005 15 6 2.1605 -3.5425 0.0894 16 6 3.2603 -3.7754 -0.7241 17 6 3.9504 -4.9682 -0.6292 18 6 3.5433 -5.9415 0.2668 19 6 2.4479 -5.7257 1.0780 20 6 1.7476 -4.5249 0.9959 21 6 0.5696 -4.2880 1.8663 22 7 -0.1919 -3.1850 1.9008 23 7 -1.1093 -3.3806 2.7861 24 7 -0.9466 -4.5470 3.3061 25 1 -1.5032 -4.9347 3.9994 26 7 0.0713 -5.1188 2.7606 27 1 -0.3633 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 4.0310 4.4435 -0.8504 33 1 0.4973 -2.3357 -0.0670 34 1 3.5795 -3.0218 -1.4288 35 1 4.8088 -5.1440 -1.2605 36 1 4.0853 -6.8733 0.3315 37 1 2.1334 -6.4880 1.7755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591061913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:40 Heat of formation + Delta-G solvation = 191.100841 kcal Electronic energy + Delta-G solvation = -23852.792044 eV Core-core repulsion = 20374.405352 eV Total energy + Delta-G solvation = -3478.386693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.62145 -40.00202 -38.11717 -35.18854 -34.48976 -33.73738 -32.58476 -30.56870 -29.68464 -28.17770 -26.77723 -25.06120 -24.46032 -23.58805 -22.02355 -21.64953 -20.77192 -19.45361 -17.96181 -17.48304 -17.25867 -16.63960 -16.39952 -15.40912 -15.18687 -14.49799 -14.29090 -14.20445 -14.08742 -13.56982 -13.48633 -13.16510 -12.54650 -12.24654 -12.04768 -11.96363 -11.63222 -11.54805 -11.47548 -11.32452 -11.13950 -11.05203 -10.88782 -10.65291 -10.30052 -10.12420 -9.84184 -9.01070 -8.73303 -8.41941 -7.96007 -6.87650 -6.21628 -6.03067 -4.07171 0.60900 1.04219 1.39235 2.04154 2.23235 2.30178 2.69889 3.31011 3.34891 3.39800 3.44303 3.53766 3.85492 3.92565 4.03353 4.47036 4.98338 5.02731 5.15473 5.26568 5.28492 5.32629 5.41645 5.57080 5.61588 5.67505 5.93128 6.02908 6.14959 6.32812 6.37094 6.52562 6.61568 6.75623 7.06910 7.19516 7.49976 7.59008 7.91141 7.95103 7.99279 8.15593 8.90860 9.55389 11.05446 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.004173 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.002925 B = 6708.187430 C = 7929.937891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.532 5.532 3 C 0.236 3.764 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.890 5.890 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.557 3.443 13 S -0.639 6.639 14 N -0.646 5.646 15 C 0.192 3.808 16 C -0.070 4.070 17 C -0.093 4.093 18 C -0.126 4.126 19 C -0.082 4.082 20 C -0.043 4.043 21 C 0.231 3.769 22 N -0.277 5.277 23 N -0.047 5.047 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.296 5.296 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -19.994 5.430 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.235 5.235 3 C 0.117 3.883 4 C -0.559 4.559 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.198 3.802 13 S -0.504 6.504 14 N -0.278 5.278 15 C 0.094 3.906 16 C -0.093 4.093 17 C -0.114 4.114 18 C -0.145 4.145 19 C -0.103 4.103 20 C -0.049 4.049 21 C -0.048 4.048 22 N -0.151 5.151 23 N -0.042 5.042 24 N -0.074 5.074 25 H 0.328 0.672 26 N -0.148 5.148 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.173 0.827 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.545 -19.160 5.753 22.165 hybrid contribution -1.263 -0.016 -0.503 1.359 sum -10.808 -19.176 5.250 22.630 Atomic orbital electron populations 1.21983 0.80600 1.03252 1.02313 1.47761 1.06352 1.06525 1.62812 1.20026 0.93944 0.75057 0.99247 1.21078 1.37408 1.06344 0.91062 0.92552 1.24825 0.95011 0.96225 0.97411 1.69916 1.37904 1.14287 1.30770 0.86528 0.78269 0.77880 0.84570 1.20475 1.21193 1.19956 1.22222 0.95384 0.81152 0.81414 1.93071 0.89773 1.92909 1.74668 1.42296 1.09920 1.02437 1.73123 1.17235 0.95007 0.83847 0.94480 1.21585 0.93186 0.96383 0.98194 1.21167 0.99449 0.92435 0.98388 1.21029 0.96834 0.99752 0.96863 1.20803 0.95038 0.95137 0.99339 1.17136 0.94267 0.97384 0.96154 1.23654 0.97894 0.87143 0.96094 1.75997 1.02751 1.22043 1.14264 1.78905 1.18047 1.01406 1.05878 1.47693 1.20193 1.10475 1.29088 0.67150 1.74923 1.02478 1.25211 1.12148 0.91535 0.89022 0.92394 0.94275 0.90294 0.92586 0.75051 0.82674 0.85174 0.85461 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 10.24 59.85 0.61 1.64 16 2 N -0.53 -11.10 2.86 -184.99 -0.53 -11.63 16 3 C 0.24 5.99 4.92 -5.19 -0.03 5.97 16 4 C -0.52 -14.30 9.39 -34.44 -0.32 -14.63 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.07 1.92 5.46 -17.81 -0.10 1.82 16 7 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.56 11.58 7.56 -86.91 -0.66 10.92 16 13 S -0.64 -15.60 24.45 -107.50 -2.63 -18.23 16 14 N -0.65 -10.85 4.18 -11.23 -0.05 -10.90 16 15 C 0.19 3.01 5.86 -83.46 -0.49 2.52 16 16 C -0.07 -1.08 7.87 -39.43 -0.31 -1.39 16 17 C -0.09 -1.13 10.03 -39.56 -0.40 -1.52 16 18 C -0.13 -1.31 10.03 -39.60 -0.40 -1.71 16 19 C -0.08 -0.92 9.69 -39.29 -0.38 -1.30 16 20 C -0.04 -0.58 5.89 -104.72 -0.62 -1.20 16 21 C 0.23 3.08 7.89 -156.29 -1.23 1.85 16 22 N -0.28 -3.81 10.11 32.14 0.32 -3.49 16 23 N -0.05 -0.54 13.47 60.35 0.81 0.28 16 24 N -0.23 -1.90 7.90 60.35 0.48 -1.43 16 25 H 0.47 1.53 8.96 -340.36 -3.05 -1.53 16 26 N -0.30 -3.21 12.08 32.16 0.39 -2.83 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 29 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 30 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 31 H 0.08 2.28 6.58 -51.92 -0.34 1.94 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.41 6.09 4.98 -40.82 -0.20 5.89 16 34 H 0.16 2.75 6.37 -50.97 -0.32 2.43 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.22 7.88 -52.48 -0.41 0.81 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -35.01 331.63 -11.12 -46.13 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.31 Total: 2.79 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -4.31 Total: 2.95 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 2.16 Total: -55.42 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -15.60 SS G_CDS: -2.63 Total: -18.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.01 -11.12 -46.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591061913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.228 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds