Wall clock time and date at job start Tue Mar 31 2020 12:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99883 * 2 1 4 4 C 1.50700 * 109.47221 * 270.00033 * 3 2 1 5 5 H 1.08001 * 120.00285 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00353 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99439 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00225 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47328 * 59.99697 * 8 6 4 10 10 H 1.48498 * 109.47344 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47041 * 299.99892 * 8 6 4 12 12 C 1.34775 * 120.00187 * 180.02562 * 2 1 3 13 13 S 1.71198 * 120.00377 * 179.97438 * 12 2 1 14 14 N 1.34785 * 119.99726 * 359.97438 * 12 2 1 15 15 C 1.39687 * 119.99864 * 184.28970 * 14 12 2 16 16 C 1.38761 * 120.13662 * 312.07819 * 15 14 12 17 17 C 1.38130 * 120.04492 * 179.70157 * 16 15 14 18 18 C 1.38412 * 120.31377 * 0.59709 * 17 16 15 19 19 C 1.38012 * 120.26527 * 359.68157 * 18 17 16 20 20 C 1.39249 * 119.95561 * 0.02562 * 19 18 17 21 21 C 1.48374 * 120.15857 * 180.02562 * 20 19 18 22 22 N 1.34071 * 126.68295 * 179.66586 * 21 20 19 23 23 N 1.28980 * 107.26908 * 179.87176 * 22 21 20 24 24 N 1.28731 * 108.95253 * 0.39980 * 23 22 21 25 25 H 0.96999 * 125.33585 * 179.76373 * 24 23 22 26 26 N 1.28872 * 109.32095 * 359.74712 * 24 23 22 27 27 H 1.08996 * 109.46927 * 270.00345 * 1 2 3 28 28 H 1.09001 * 109.47201 * 30.00032 * 1 2 3 29 29 H 1.08998 * 109.47281 * 150.00283 * 1 2 3 30 30 H 1.08995 * 109.47686 * 30.00290 * 3 2 1 31 31 H 1.09009 * 109.46994 * 150.00453 * 3 2 1 32 32 H 0.96995 * 119.99422 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99773 * 4.56405 * 14 12 2 34 34 H 1.08003 * 119.97580 * 359.97438 * 16 15 14 35 35 H 1.08000 * 119.84020 * 180.30211 * 17 16 15 36 36 H 1.07992 * 119.86419 * 179.69977 * 18 17 16 37 37 H 1.08003 * 120.02526 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5542 3.6177 -0.6731 8 14 3.4388 3.4164 -3.4339 9 1 2.1415 3.5942 -4.1343 10 1 4.1812 4.7025 -3.4340 11 1 4.2412 2.3811 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 16 3.8509 -1.1672 -0.0012 14 7 1.4650 -2.3344 -0.0005 15 6 2.1605 -3.5425 0.0894 16 6 3.2603 -3.7754 -0.7241 17 6 3.9504 -4.9682 -0.6292 18 6 3.5433 -5.9415 0.2668 19 6 2.4479 -5.7257 1.0780 20 6 1.7476 -4.5249 0.9959 21 6 0.5696 -4.2880 1.8663 22 7 -0.1919 -3.1850 1.9008 23 7 -1.1093 -3.3806 2.7861 24 7 -0.9466 -4.5470 3.3061 25 1 -1.5032 -4.9347 3.9994 26 7 0.0713 -5.1188 2.7606 27 1 -0.3633 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 4.0310 4.4435 -0.8504 33 1 0.4973 -2.3357 -0.0670 34 1 3.5795 -3.0218 -1.4288 35 1 4.8088 -5.1440 -1.2605 36 1 4.0853 -6.8733 0.3315 37 1 2.1334 -6.4880 1.7755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591061913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:39 Heat of formation + Delta-G solvation = 168.397037 kcal Electronic energy + Delta-G solvation = -23853.776555 eV Core-core repulsion = 20374.405352 eV Total energy + Delta-G solvation = -3479.371203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.50407 -41.25457 -39.51811 -36.60246 -35.44033 -34.66538 -34.61639 -31.53876 -30.96152 -29.84301 -28.40916 -25.99917 -25.65076 -25.15121 -23.37627 -22.73517 -22.18591 -20.37471 -19.26239 -18.90383 -18.64709 -18.16460 -17.52030 -16.96985 -16.46429 -16.31076 -15.59828 -15.45011 -15.18590 -15.08018 -14.55277 -14.30516 -14.10922 -13.59623 -13.46350 -13.27848 -13.20034 -12.84794 -12.63335 -12.52830 -12.46345 -12.42373 -12.17176 -12.12922 -12.07527 -11.93897 -11.71402 -10.59166 -10.44152 -9.77374 -9.27438 -8.72635 -8.17563 -8.03460 -6.29052 -0.37683 0.11083 0.27491 0.73859 1.06315 1.30744 1.39403 1.40131 1.45518 1.51391 1.74713 2.36038 2.46720 2.62474 2.88456 3.10053 3.15491 3.99063 4.01340 4.06533 4.27052 4.33074 4.39368 4.44118 4.53748 4.59720 4.65465 4.82950 5.05953 5.19789 5.28930 5.35172 5.44534 5.58430 5.62399 5.67059 5.77018 5.88965 6.02127 6.09965 6.41719 6.74762 7.06774 7.37213 8.90337 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.004173 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.002925 B = 6708.187430 C = 7929.937891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.539 5.539 3 C 0.254 3.746 4 C -0.526 4.526 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.575 3.425 13 S -0.725 6.725 14 N -0.620 5.620 15 C 0.154 3.846 16 C -0.089 4.089 17 C -0.094 4.094 18 C -0.107 4.107 19 C -0.076 4.076 20 C -0.043 4.043 21 C 0.212 3.788 22 N -0.307 5.307 23 N -0.052 5.052 24 N -0.197 5.197 25 H 0.495 0.505 26 N -0.284 5.284 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.418 0.582 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 -22.691 5.647 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.241 5.241 3 C 0.133 3.867 4 C -0.565 4.565 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.213 3.787 13 S -0.593 6.593 14 N -0.251 5.251 15 C 0.058 3.942 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.125 4.125 19 C -0.097 4.097 20 C -0.050 4.050 21 C -0.067 4.067 22 N -0.179 5.179 23 N -0.047 5.047 24 N -0.048 5.048 25 H 0.355 0.645 26 N -0.136 5.136 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.262 0.738 34 H 0.140 0.860 35 H 0.168 0.832 36 H 0.187 0.813 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.231 -21.938 5.982 25.362 hybrid contribution -0.884 0.581 -0.441 1.146 sum -12.115 -21.357 5.541 25.171 Atomic orbital electron populations 1.22243 0.77232 1.04749 1.03953 1.47562 1.08231 1.05216 1.63141 1.19445 0.92651 0.76743 0.97816 1.21292 1.37180 1.06263 0.91789 0.93073 1.25653 0.94769 0.96390 1.01389 1.70032 1.38733 1.14746 1.32820 0.85534 0.78680 0.77236 0.79739 1.18647 1.20561 1.20605 1.21710 0.93852 0.82275 0.80858 1.93150 0.94025 1.93961 1.78211 1.42135 1.10240 1.01723 1.71003 1.17461 0.96224 0.83873 0.96675 1.21412 0.94077 0.97306 0.98369 1.21450 0.99440 0.91590 0.98943 1.21480 0.95964 1.00400 0.94640 1.21200 0.94570 0.94558 0.99362 1.17284 0.94598 0.97466 0.95615 1.23660 0.98365 0.87660 0.97053 1.75946 1.03595 1.22881 1.15479 1.78849 1.17718 1.02269 1.05885 1.47771 1.19249 1.09468 1.28319 0.64531 1.74873 1.02648 1.24687 1.11417 0.89735 0.88642 0.89801 0.94824 0.94211 0.92500 0.73836 0.85964 0.83211 0.81305 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.92 10.24 127.77 1.31 3.23 16 2 N -0.54 -22.99 2.86 -739.20 -2.11 -25.10 16 3 C 0.25 13.43 4.92 85.63 0.42 13.85 16 4 C -0.53 -29.71 9.39 25.60 0.24 -29.47 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 6 C 0.02 1.01 5.46 84.65 0.46 1.47 16 7 N -0.92 -55.68 13.29 21.45 0.28 -55.40 16 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 9 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 C 0.58 24.70 7.56 179.05 1.35 26.05 16 13 S -0.73 -37.51 24.45 -56.49 -1.38 -38.89 16 14 N -0.62 -21.03 4.18 -189.44 -0.79 -21.82 16 15 C 0.15 4.84 5.86 38.42 0.23 5.06 16 16 C -0.09 -2.80 7.87 22.37 0.18 -2.63 16 17 C -0.09 -2.14 10.03 22.29 0.22 -1.92 16 18 C -0.11 -1.85 10.03 22.26 0.22 -1.62 16 19 C -0.08 -1.47 9.69 22.46 0.22 -1.25 16 20 C -0.04 -1.12 5.89 -19.93 -0.12 -1.24 16 21 C 0.21 5.23 7.89 137.34 1.08 6.31 16 22 N -0.31 -7.96 10.11 -52.22 -0.53 -8.48 16 23 N -0.05 -1.08 13.47 37.02 0.50 -0.58 16 24 N -0.20 -2.70 7.90 37.02 0.29 -2.41 16 25 H 0.50 1.53 8.96 -347.53 -3.12 -1.58 16 26 N -0.28 -5.32 12.08 -52.17 -0.63 -5.95 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.88 8.07 -2.39 -0.02 2.86 16 29 H 0.08 2.12 6.30 -2.39 -0.02 2.11 16 30 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 31 H 0.04 2.43 6.58 -2.38 -0.02 2.42 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.42 12.26 4.98 -92.71 -0.46 11.80 16 34 H 0.12 4.66 6.37 -3.87 -0.02 4.64 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.16 2.23 7.88 -2.91 -0.02 2.21 16 Total: -1.00 -80.00 331.63 1.04 -78.96 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -2.43 Total: 14.50 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 5.82 Total: 17.84 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -2.99 Total: -119.74 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: -37.51 SS G_CDS: -1.38 Total: -38.89 kcal Total: -80.00 1.04 -78.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591061913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.356 kcal (2) G-P(sol) polarization free energy of solvation -80.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds