Wall clock time and date at job start Tue Mar 31 2020 12:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35969 * 117.00244 * 2 1 4 4 C 1.38363 * 120.01987 * 0.25611 * 3 2 1 5 5 C 1.39304 * 119.88207 * 180.25338 * 4 3 2 6 6 C 1.48435 * 120.04174 * 179.76911 * 5 4 3 7 7 N 1.34056 * 126.67542 * 359.65898 * 6 5 4 8 8 N 1.28988 * 107.26192 * 179.89733 * 7 6 5 9 9 N 1.28724 * 108.95441 * 0.37930 * 8 7 6 10 10 H 0.96995 * 125.34458 * 179.78510 * 9 8 7 11 11 N 1.28874 * 109.31897 * 359.75619 * 9 8 7 12 12 C 1.39343 * 119.91827 * 359.74244 * 5 4 3 13 13 C 1.37986 * 120.02981 * 359.97438 * 12 5 4 14 14 C 1.38688 * 120.12371 * 0.02562 * 13 12 5 15 15 O 1.35961 * 119.96153 * 179.97438 * 14 13 12 16 16 C 1.34247 * 116.99954 * 265.79052 * 15 14 13 17 17 O 1.20825 * 119.99477 * 354.91687 * 16 15 14 18 18 C 1.50690 * 119.99728 * 174.92055 * 16 15 14 19 19 H 1.08995 * 109.47426 * 299.99263 * 18 16 15 20 20 C 1.52998 * 109.47559 * 59.99942 * 18 16 15 21 21 C 1.50710 * 109.46954 * 179.97438 * 18 16 15 22 22 H 1.08002 * 119.99459 * 0.02562 * 21 18 16 23 23 C 1.37870 * 120.00277 * 179.97438 * 21 18 16 24 24 N 1.31523 * 119.99820 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 120.00257 * 180.02562 * 23 21 18 26 26 H 1.48494 * 109.46826 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47175 * 119.99853 * 25 23 21 28 28 H 1.48493 * 109.47079 * 240.00100 * 25 23 21 29 29 H 1.09000 * 109.47088 * 300.00262 * 1 2 3 30 30 H 1.08997 * 109.46769 * 59.99901 * 1 2 3 31 31 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.05949 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.98610 * 180.02562 * 12 5 4 34 34 H 1.07998 * 119.94054 * 180.02562 * 13 12 5 35 35 H 1.09003 * 109.46940 * 300.00102 * 20 18 16 36 36 H 1.08999 * 109.47676 * 179.97438 * 20 18 16 37 37 H 1.09008 * 109.47087 * 59.99516 * 20 18 16 38 38 H 0.96999 * 119.99731 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2932 2.3722 0.0054 5 6 1.9286 3.6118 0.0000 6 6 1.1241 4.8592 0.0005 7 7 -0.2134 4.9494 -0.0006 8 7 -0.5124 6.2041 0.0026 9 7 0.5749 6.8931 -0.0024 10 1 0.6254 7.8618 -0.0044 11 7 1.5860 6.0940 -0.0037 12 6 3.3204 3.6794 -0.0053 13 6 4.0681 2.5196 -0.0047 14 6 3.4370 1.2847 0.0006 15 8 4.1769 0.1440 0.0007 16 6 4.4305 -0.4180 -1.1919 17 8 3.9308 0.0380 -2.1930 18 6 5.3383 -1.6174 -1.2817 19 1 6.3248 -1.3560 -0.8988 20 6 4.7553 -2.7618 -0.4503 21 6 5.4562 -2.0515 -2.7201 22 1 4.9270 -1.5124 -3.4919 23 6 6.2405 -3.1361 -3.0508 24 7 6.8854 -3.7923 -2.1109 25 14 6.3872 -3.6738 -4.8337 26 1 5.5694 -2.7775 -5.6898 27 1 7.8088 -3.6021 -5.2570 28 1 5.8995 -5.0696 -4.9715 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2146 2.3172 0.0091 33 1 3.8142 4.6399 -0.0090 34 1 5.1467 2.5737 -0.0084 35 1 4.6697 -2.4480 0.5901 36 1 5.4118 -3.6295 -0.5156 37 1 3.7688 -3.0232 -0.8333 38 1 7.4368 -4.5556 -2.3435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591493669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:27 Heat of formation + Delta-G solvation = 38.315100 kcal Electronic energy + Delta-G solvation = -25930.750417 eV Core-core repulsion = 21970.692815 eV Total energy + Delta-G solvation = -3960.057602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.70522 -40.91658 -39.25325 -37.54866 -36.17692 -34.56722 -33.89835 -33.48419 -30.83251 -30.46496 -29.79149 -27.34877 -25.24167 -25.07403 -24.77935 -23.24195 -22.24186 -21.66824 -20.08710 -19.54675 -18.09980 -17.39264 -17.23368 -16.60189 -16.18217 -16.11749 -15.53573 -15.50486 -14.75688 -14.47398 -14.40070 -14.18059 -13.63603 -13.19225 -12.99504 -12.67478 -12.62362 -12.30482 -11.96129 -11.68283 -11.64381 -11.49899 -11.35648 -11.34315 -11.06317 -10.81906 -10.71228 -10.65643 -10.42678 -10.26390 -10.06356 -9.33615 -9.04221 -8.79733 -8.46086 -8.09370 -6.10885 -4.16428 0.45380 0.93064 1.31246 1.96614 2.10362 3.15901 3.28717 3.30596 3.31386 3.37166 3.44804 3.48344 3.91430 3.95736 4.41661 4.78063 4.85464 4.99900 5.12689 5.17530 5.19999 5.22540 5.23658 5.37575 5.53577 5.62661 5.90941 6.09453 6.16894 6.20088 6.26587 6.56395 6.69536 6.88196 6.92525 7.15838 7.42222 7.44738 7.75048 7.88185 7.95213 8.13387 8.84254 8.93314 9.49190 10.96429 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002951 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.087550 B = 9486.156550 C = 9786.829015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.298 6.298 3 C 0.123 3.877 4 C -0.157 4.157 5 C 0.006 3.994 6 C 0.228 3.772 7 N -0.269 5.269 8 N -0.051 5.051 9 N -0.228 5.228 10 H 0.475 0.525 11 N -0.291 5.291 12 C -0.101 4.101 13 C -0.092 4.092 14 C 0.094 3.906 15 O -0.298 6.298 16 C 0.467 3.533 17 O -0.497 6.497 18 C 0.062 3.938 19 H 0.067 0.933 20 C -0.134 4.134 21 C -0.512 4.512 22 H 0.076 0.924 23 C 0.062 3.938 24 N -0.891 5.891 25 Si 0.904 3.096 26 H -0.271 1.271 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.025 0.975 36 H 0.096 0.904 37 H 0.033 0.967 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 17.308 7.790 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.210 6.210 3 C 0.077 3.923 4 C -0.178 4.178 5 C 0.002 3.998 6 C -0.052 4.052 7 N -0.142 5.142 8 N -0.046 5.046 9 N -0.074 5.074 10 H 0.329 0.671 11 N -0.143 5.143 12 C -0.121 4.121 13 C -0.111 4.111 14 C 0.050 3.950 15 O -0.215 6.215 16 C 0.312 3.688 17 O -0.381 6.381 18 C 0.043 3.957 19 H 0.084 0.916 20 C -0.191 4.191 21 C -0.550 4.550 22 H 0.094 0.906 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.731 3.269 26 H -0.195 1.195 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.044 0.956 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.597 17.446 7.471 22.241 hybrid contribution 0.166 0.336 -0.952 1.023 sum -11.431 17.781 6.519 22.121 Atomic orbital electron populations 1.23139 0.78211 1.04358 1.01358 1.86247 1.21439 1.25309 1.88009 1.19070 0.91291 0.85028 0.96921 1.21025 1.00731 0.90084 1.05935 1.16890 0.91463 0.86676 1.04759 1.23623 0.88722 0.91759 1.01080 1.76089 1.12381 1.07909 1.17806 1.78899 1.12524 0.98417 1.14776 1.47723 1.00957 1.12623 1.46126 0.67050 1.74957 1.15979 1.01323 1.22026 1.20859 0.91505 0.98801 1.00964 1.21048 1.01133 0.89778 0.99105 1.18187 0.86782 0.86940 1.03062 1.84835 1.64651 1.35454 1.36516 1.25880 0.79462 0.84448 0.79002 1.90524 1.48720 1.62401 1.36459 1.18813 0.92412 0.85334 0.99106 0.91570 1.21736 1.00597 1.01271 0.95543 1.21172 1.29220 1.13803 0.90802 0.90554 1.24926 0.95020 0.95929 0.98048 1.69893 1.30466 1.20456 1.32168 0.86325 0.77846 0.78433 0.84252 1.19498 1.20879 1.20865 0.92480 0.92421 0.87877 0.83666 0.84201 0.83580 0.95617 0.88525 0.94777 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.30 -5.10 10.27 -34.29 -0.35 -5.45 16 3 C 0.12 2.08 6.68 -39.16 -0.26 1.82 16 4 C -0.16 -2.21 8.68 -39.14 -0.34 -2.55 16 5 C 0.01 0.08 5.88 -104.89 -0.62 -0.54 16 6 C 0.23 2.84 7.93 -156.29 -1.24 1.60 16 7 N -0.27 -3.38 12.23 32.15 0.39 -2.99 16 8 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 9 N -0.23 -1.72 7.90 60.35 0.48 -1.24 16 10 H 0.48 1.13 8.96 -340.37 -3.05 -1.92 16 11 N -0.29 -3.02 12.08 32.17 0.39 -2.63 16 12 C -0.10 -1.30 9.69 -39.26 -0.38 -1.68 16 13 C -0.09 -1.37 9.97 -39.51 -0.39 -1.76 16 14 C 0.09 1.71 4.94 -39.03 -0.19 1.51 16 15 O -0.30 -6.23 9.70 -29.04 -0.28 -6.51 16 16 C 0.47 11.16 7.19 36.00 0.26 11.42 16 17 O -0.50 -12.93 15.19 -18.75 -0.28 -13.21 16 18 C 0.06 1.58 2.74 -92.92 -0.25 1.33 16 19 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 20 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 21 C -0.51 -14.33 8.37 -34.44 -0.29 -14.62 16 22 H 0.08 2.24 6.76 -52.49 -0.35 1.88 16 23 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 24 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 25 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 29 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 30 H 0.06 0.62 7.67 -51.93 -0.40 0.23 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.15 1.78 6.11 -52.49 -0.32 1.46 16 33 H 0.14 1.46 7.87 -52.49 -0.41 1.04 16 34 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 36 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 37 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -33.64 339.09 -7.11 -40.75 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.50 Total: -3.06 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.48 Total: -3.45 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 2.70 Total: -30.57 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.92 Total: -25.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.64 -7.11 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591493669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.065 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds