Wall clock time and date at job start Tue Mar 31 2020 12:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35969 * 117.00244 * 2 1 4 4 C 1.38363 * 120.01987 * 0.25611 * 3 2 1 5 5 C 1.39304 * 119.88207 * 180.25338 * 4 3 2 6 6 C 1.48435 * 120.04174 * 179.76911 * 5 4 3 7 7 N 1.34056 * 126.67542 * 359.65898 * 6 5 4 8 8 N 1.28988 * 107.26192 * 179.89733 * 7 6 5 9 9 N 1.28724 * 108.95441 * 0.37930 * 8 7 6 10 10 H 0.96995 * 125.34458 * 179.78510 * 9 8 7 11 11 N 1.28874 * 109.31897 * 359.75619 * 9 8 7 12 12 C 1.39343 * 119.91827 * 359.74244 * 5 4 3 13 13 C 1.37986 * 120.02981 * 359.97438 * 12 5 4 14 14 C 1.38688 * 120.12371 * 0.02562 * 13 12 5 15 15 O 1.35961 * 119.96153 * 179.97438 * 14 13 12 16 16 C 1.34247 * 116.99954 * 265.79052 * 15 14 13 17 17 O 1.20825 * 119.99477 * 354.91687 * 16 15 14 18 18 C 1.50690 * 119.99728 * 174.92055 * 16 15 14 19 19 H 1.08995 * 109.47426 * 299.99263 * 18 16 15 20 20 C 1.52998 * 109.47559 * 59.99942 * 18 16 15 21 21 C 1.50710 * 109.46954 * 179.97438 * 18 16 15 22 22 H 1.08002 * 119.99459 * 0.02562 * 21 18 16 23 23 C 1.37870 * 120.00277 * 179.97438 * 21 18 16 24 24 N 1.31523 * 119.99820 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 120.00257 * 180.02562 * 23 21 18 26 26 H 1.48494 * 109.46826 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47175 * 119.99853 * 25 23 21 28 28 H 1.48493 * 109.47079 * 240.00100 * 25 23 21 29 29 H 1.09000 * 109.47088 * 300.00262 * 1 2 3 30 30 H 1.08997 * 109.46769 * 59.99901 * 1 2 3 31 31 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.05949 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.98610 * 180.02562 * 12 5 4 34 34 H 1.07998 * 119.94054 * 180.02562 * 13 12 5 35 35 H 1.09003 * 109.46940 * 300.00102 * 20 18 16 36 36 H 1.08999 * 109.47676 * 179.97438 * 20 18 16 37 37 H 1.09008 * 109.47087 * 59.99516 * 20 18 16 38 38 H 0.96999 * 119.99731 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2932 2.3722 0.0054 5 6 1.9286 3.6118 0.0000 6 6 1.1241 4.8592 0.0005 7 7 -0.2134 4.9494 -0.0006 8 7 -0.5124 6.2041 0.0026 9 7 0.5749 6.8931 -0.0024 10 1 0.6254 7.8618 -0.0044 11 7 1.5860 6.0940 -0.0037 12 6 3.3204 3.6794 -0.0053 13 6 4.0681 2.5196 -0.0047 14 6 3.4370 1.2847 0.0006 15 8 4.1769 0.1440 0.0007 16 6 4.4305 -0.4180 -1.1919 17 8 3.9308 0.0380 -2.1930 18 6 5.3383 -1.6174 -1.2817 19 1 6.3248 -1.3560 -0.8988 20 6 4.7553 -2.7618 -0.4503 21 6 5.4562 -2.0515 -2.7201 22 1 4.9270 -1.5124 -3.4919 23 6 6.2405 -3.1361 -3.0508 24 7 6.8854 -3.7923 -2.1109 25 14 6.3872 -3.6738 -4.8337 26 1 5.5694 -2.7775 -5.6898 27 1 7.8088 -3.6021 -5.2570 28 1 5.8995 -5.0696 -4.9715 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2146 2.3172 0.0091 33 1 3.8142 4.6399 -0.0090 34 1 5.1467 2.5737 -0.0084 35 1 4.6697 -2.4480 0.5901 36 1 5.4118 -3.6295 -0.5156 37 1 3.7688 -3.0232 -0.8333 38 1 7.4368 -4.5556 -2.3435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591493669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:27 Heat of formation + Delta-G solvation = 16.774453 kcal Electronic energy + Delta-G solvation = -25931.684489 eV Core-core repulsion = 21970.692815 eV Total energy + Delta-G solvation = -3960.991674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.53516 -42.37144 -40.67493 -38.73595 -37.82262 -35.93016 -35.42437 -34.43009 -32.72469 -31.64731 -30.98723 -28.33533 -27.29138 -26.34286 -25.73103 -24.71649 -23.35564 -22.94899 -21.72937 -20.37274 -19.37058 -18.71995 -18.21535 -18.20857 -17.98340 -17.75160 -16.74750 -16.60276 -16.45851 -15.99696 -15.59431 -15.31102 -14.86322 -14.83095 -14.50766 -13.97282 -13.82138 -13.51809 -13.39557 -13.03750 -12.98554 -12.77798 -12.61663 -12.57830 -12.49633 -12.38187 -12.28717 -12.24265 -12.06634 -11.85495 -11.69279 -11.16107 -11.09972 -10.53698 -9.95210 -9.30096 -8.19357 -6.32707 -0.62754 0.08525 0.19423 1.05265 1.35194 1.36903 1.42494 1.43894 1.56954 1.94456 2.19948 2.43777 2.52298 2.66642 3.05361 3.10587 3.64280 3.80485 3.96961 4.01823 4.14162 4.31464 4.34389 4.37720 4.48387 4.61978 4.68078 4.70564 4.86410 4.90629 5.02381 5.06395 5.15453 5.33820 5.43660 5.57085 5.59182 5.71424 5.88512 6.09396 6.23253 6.73670 7.04130 7.08387 7.36102 8.87306 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002951 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.087550 B = 9486.156550 C = 9786.829015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.113 3.887 4 C -0.155 4.155 5 C 0.015 3.985 6 C 0.211 3.789 7 N -0.290 5.290 8 N -0.053 5.053 9 N -0.196 5.196 10 H 0.496 0.504 11 N -0.283 5.283 12 C -0.093 4.093 13 C -0.088 4.088 14 C 0.040 3.960 15 O -0.294 6.294 16 C 0.474 3.526 17 O -0.526 6.526 18 C 0.056 3.944 19 H 0.057 0.943 20 C -0.120 4.120 21 C -0.538 4.538 22 H 0.055 0.945 23 C 0.024 3.976 24 N -0.908 5.908 25 Si 0.963 3.037 26 H -0.277 1.277 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.027 0.973 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 19.244 7.925 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.067 3.933 4 C -0.175 4.175 5 C 0.012 3.988 6 C -0.069 4.069 7 N -0.162 5.162 8 N -0.047 5.047 9 N -0.047 5.047 10 H 0.356 0.644 11 N -0.136 5.136 12 C -0.113 4.113 13 C -0.106 4.106 14 C -0.003 4.003 15 O -0.210 6.210 16 C 0.320 3.680 17 O -0.413 6.413 18 C 0.037 3.963 19 H 0.075 0.925 20 C -0.178 4.178 21 C -0.575 4.575 22 H 0.073 0.927 23 C -0.176 4.176 24 N -0.546 5.546 25 Si 0.788 3.212 26 H -0.202 1.202 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.178 0.822 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.331 19.406 7.644 24.229 hybrid contribution 0.283 -0.033 -0.915 0.958 sum -12.048 19.373 6.729 23.785 Atomic orbital electron populations 1.23449 0.75818 1.05883 1.02714 1.86190 1.24118 1.26030 1.88153 1.19221 0.91136 0.85816 0.97141 1.21154 1.01402 0.89523 1.05450 1.17080 0.91940 0.87055 1.02770 1.23422 0.88803 0.91930 1.02744 1.76078 1.12522 1.09003 1.18616 1.78860 1.12962 0.97959 1.14955 1.47800 0.99817 1.13556 1.43542 0.64389 1.74912 1.16518 1.00850 1.21319 1.21112 0.91295 0.99173 0.99713 1.21275 1.02100 0.89246 0.98007 1.18679 0.87557 0.86734 1.07320 1.84761 1.64936 1.36814 1.34471 1.25394 0.78845 0.84085 0.79632 1.90486 1.49863 1.63240 1.37670 1.18716 0.92633 0.86754 0.98222 0.92483 1.21558 0.99530 1.00114 0.96551 1.21252 1.30021 1.14566 0.91688 0.92665 1.25615 0.94425 0.95652 1.01869 1.69965 1.30387 1.20580 1.33695 0.85421 0.78122 0.78091 0.79532 1.20228 1.19690 1.19794 0.90264 0.91819 0.86416 0.82041 0.81308 0.82194 0.93454 0.90082 0.95423 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.33 -11.53 10.27 -79.19 -0.81 -12.35 16 3 C 0.11 3.85 6.68 22.55 0.15 4.00 16 4 C -0.15 -4.23 8.68 22.56 0.20 -4.03 16 5 C 0.01 0.38 5.88 -20.04 -0.12 0.26 16 6 C 0.21 4.75 7.93 137.36 1.09 5.84 16 7 N -0.29 -6.66 12.23 -52.18 -0.64 -7.30 16 8 N -0.05 -0.94 13.47 37.02 0.50 -0.44 16 9 N -0.20 -2.31 7.90 37.02 0.29 -2.01 16 10 H 0.50 0.57 8.96 -347.54 -3.12 -2.55 16 11 N -0.28 -4.99 12.08 -52.13 -0.63 -5.62 16 12 C -0.09 -2.21 9.69 22.48 0.22 -1.99 16 13 C -0.09 -2.56 9.97 22.32 0.22 -2.34 16 14 C 0.04 1.47 4.94 22.62 0.11 1.58 16 15 O -0.29 -12.64 9.70 9.41 0.09 -12.54 16 16 C 0.47 23.43 7.19 71.23 0.51 23.94 16 17 O -0.53 -28.33 15.19 21.97 0.33 -28.00 16 18 C 0.06 2.92 2.74 -12.29 -0.03 2.89 16 19 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 20 C -0.12 -5.84 8.90 71.98 0.64 -5.19 16 21 C -0.54 -30.92 8.37 25.60 0.21 -30.71 16 22 H 0.06 3.36 6.76 -2.91 -0.02 3.34 16 23 C 0.02 1.35 5.30 84.65 0.45 1.80 16 24 N -0.91 -50.43 11.32 21.45 0.24 -50.19 16 25 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 29 H 0.08 1.41 7.65 -2.39 -0.02 1.39 16 30 H 0.06 1.34 7.67 -2.39 -0.02 1.32 16 31 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.16 3.76 6.11 -2.91 -0.02 3.75 16 33 H 0.17 2.99 7.87 -2.91 -0.02 2.97 16 34 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.05 2.04 8.11 -2.39 -0.02 2.02 16 36 H 0.08 4.20 6.07 -2.39 -0.01 4.19 16 37 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -73.48 339.09 4.19 -69.29 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -1.98 Total: 5.57 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 4.77 Total: -2.51 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -0.23 Total: -65.56 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -0.39 Total: -52.89 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.48 4.19 -69.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591493669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.061 kcal (2) G-P(sol) polarization free energy of solvation -73.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds