Wall clock time and date at job start Tue Mar 31 2020 11:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47114 * 2 1 4 4 C 1.50697 * 109.47316 * 239.99854 * 2 1 3 5 5 H 1.08002 * 119.99716 * 239.99658 * 4 2 1 6 6 C 1.37873 * 120.00085 * 60.00086 * 4 2 1 7 7 N 1.31516 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00132 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47463 * 89.99745 * 8 6 4 10 10 H 1.48502 * 109.47330 * 209.99835 * 8 6 4 11 11 H 1.48509 * 109.47089 * 330.00019 * 8 6 4 12 12 N 1.46508 * 109.47074 * 119.99747 * 2 1 3 13 13 C 1.34774 * 119.99691 * 275.00173 * 12 2 1 14 14 O 1.21584 * 120.00523 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99541 * 180.02562 * 13 12 2 16 16 C 1.40148 * 119.99845 * 184.60996 * 15 13 12 17 17 C 1.39416 * 119.92218 * 144.86568 * 16 15 13 18 18 C 1.37677 * 120.68572 * 180.02562 * 17 16 15 19 19 C 1.39037 * 120.09348 * 0.03462 * 18 17 16 20 20 O 1.34823 * 133.05684 * 179.64968 * 19 18 17 21 21 C 1.34941 * 110.86573 * 179.88283 * 20 19 18 22 22 C 1.46805 * 125.14165 * 180.15035 * 21 20 19 23 23 O 1.21575 * 120.00131 * 180.30740 * 22 21 20 24 24 O 1.34861 * 119.99626 * 0.30477 * 22 21 20 25 25 C 1.35903 * 109.71918 * 0.41285 * 21 20 19 26 26 C 1.40716 * 119.36571 * 359.96175 * 19 18 17 27 27 C 1.38172 * 119.92112 * 324.88169 * 16 15 13 28 28 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47527 * 300.00104 * 1 2 3 30 30 H 1.09001 * 109.47220 * 60.00529 * 1 2 3 31 31 H 0.97004 * 119.99527 * 180.02562 * 7 6 4 32 32 H 0.97001 * 119.99825 * 94.99962 * 12 2 1 33 33 H 0.96999 * 120.00566 * 4.60152 * 15 13 12 34 34 H 1.08005 * 119.65938 * 0.02562 * 17 16 15 35 35 H 1.08001 * 119.95333 * 180.02562 * 18 17 16 36 36 H 0.96701 * 116.99520 * 180.02562 * 24 22 21 37 37 H 1.07997 * 126.96184 * 179.79065 * 25 21 20 38 38 H 1.08003 * 120.22839 * 359.95821 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.3428 -2.1619 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8582 1.1617 2.4116 15 7 2.5967 -0.6534 3.4575 16 6 2.6392 0.0189 4.6865 17 6 2.3774 -0.6740 5.8676 18 6 2.4144 -0.0291 7.0834 19 6 2.7142 1.3272 7.1444 20 8 2.8143 2.2028 8.1647 21 6 3.1371 3.4326 7.7127 22 6 3.3282 4.6194 8.5554 23 8 3.6134 5.6864 8.0472 24 8 3.1874 4.5260 9.8934 25 6 3.2529 3.4078 6.3588 26 6 2.9790 2.0295 5.9541 27 6 2.9401 1.3669 4.7246 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.7082 1.1607 -3.4845 32 1 2.2489 -1.6318 1.1527 33 1 2.8908 -1.5758 3.3989 34 1 2.1432 -1.7276 5.8285 35 1 2.2101 -0.5775 7.9912 36 1 3.3226 5.3344 10.4065 37 1 3.4981 4.2377 5.7127 38 1 3.1435 1.9047 3.8104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:38 Heat of formation + Delta-G solvation = -80.858835 kcal Electronic energy + Delta-G solvation = -25117.327000 eV Core-core repulsion = 21119.808877 eV Total energy + Delta-G solvation = -3997.518122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67215 -40.36384 -39.98282 -37.79254 -36.58256 -35.05031 -34.10421 -33.02490 -32.44583 -30.04000 -29.73456 -28.20450 -25.46330 -25.29098 -23.16407 -22.20055 -21.29792 -21.13981 -19.93691 -19.04971 -18.39159 -17.86785 -17.45833 -17.08390 -16.78049 -15.99758 -15.51396 -15.10678 -15.01468 -14.70625 -14.27598 -14.04049 -13.97031 -13.43961 -13.42158 -13.21203 -12.93279 -12.50082 -12.43916 -12.04490 -11.77896 -11.37846 -11.34652 -11.14908 -11.01933 -10.79563 -10.48120 -10.37724 -10.27615 -10.04847 -9.47088 -9.09468 -8.62009 -8.56498 -8.15990 -7.77714 -6.16934 -4.26504 0.20020 1.20198 1.48909 2.00643 2.56635 2.80121 3.06958 3.21400 3.28923 3.31000 3.43508 3.85009 4.27670 4.38809 4.45772 4.73594 4.78846 4.97038 5.03117 5.07398 5.15891 5.38018 5.62749 5.74776 5.90224 5.93870 6.09941 6.19690 6.32601 6.66268 6.74326 6.92690 7.00482 7.05398 7.15969 7.38495 7.40808 7.57182 7.76800 7.92997 8.10363 8.65870 8.77751 9.14386 9.41645 10.89066 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.002396 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.730880 B =11681.282719 C =12386.898696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.717 5.717 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.695 5.695 16 C 0.158 3.842 17 C -0.099 4.099 18 C -0.097 4.097 19 C 0.056 3.944 20 O -0.176 6.176 21 C -0.028 4.028 22 C 0.572 3.428 23 O -0.490 6.490 24 O -0.502 6.502 25 C -0.080 4.080 26 C -0.131 4.131 27 C -0.058 4.058 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.091 0.909 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.405 0.595 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.419 0.581 37 H 0.175 0.825 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -1.345 21.645 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.368 5.368 13 C 0.392 3.608 14 O -0.459 6.459 15 N -0.343 5.343 16 C 0.062 3.938 17 C -0.120 4.120 18 C -0.116 4.116 19 C 0.008 3.992 20 O -0.078 6.078 21 C -0.076 4.076 22 C 0.415 3.585 23 O -0.379 6.379 24 O -0.314 6.314 25 C -0.099 4.099 26 C -0.133 4.133 27 C -0.079 4.079 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.240 0.760 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.279 0.721 37 H 0.192 0.808 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.097 -0.278 21.304 21.696 hybrid contribution 0.539 -0.806 -0.686 1.188 sum 4.636 -1.084 20.618 21.161 Atomic orbital electron populations 1.22107 0.98479 0.99136 1.01000 1.18706 0.90893 0.93769 0.78785 0.93205 1.21190 1.32624 1.13314 0.90210 0.92049 1.24884 0.94810 0.94948 0.99071 1.69904 1.35712 1.22357 1.23985 0.86426 0.79129 0.79257 0.82138 1.20535 1.21038 1.19868 1.45879 1.68360 1.13361 1.09166 1.16170 0.78625 0.85526 0.80445 1.90877 1.57125 1.14092 1.83842 1.42804 1.68731 1.16416 1.06390 1.17250 0.99811 0.91959 0.84807 1.20792 1.00447 1.00613 0.90109 1.19623 1.04446 0.88943 0.98627 1.19709 1.02865 0.91862 0.84776 1.84069 1.73452 1.16196 1.34091 1.20309 1.11533 0.83853 0.91873 1.18961 0.73340 0.85545 0.80640 1.91023 1.44612 1.27503 1.74784 1.84670 1.83221 1.44441 1.19085 1.22859 0.97902 0.96670 0.92512 1.19686 1.06682 0.92922 0.93987 1.20867 0.96598 0.93553 0.96928 0.95489 0.96558 0.89059 0.92491 0.78076 0.75993 0.84062 0.84343 0.72149 0.80786 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.15 0.34 -3.28 16 2 C 0.28 6.90 2.56 -69.08 -0.18 6.72 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 N -0.72 -14.08 5.07 -59.81 -0.30 -14.38 16 13 C 0.69 13.15 8.37 -86.92 -0.73 12.42 16 14 O -0.58 -13.33 13.44 5.29 0.07 -13.26 16 15 N -0.69 -9.59 5.35 -14.21 -0.08 -9.66 16 16 C 0.16 2.14 6.30 -83.64 -0.53 1.62 16 17 C -0.10 -1.02 9.93 -39.35 -0.39 -1.41 16 18 C -0.10 -1.00 10.05 -39.49 -0.40 -1.40 16 19 C 0.06 0.72 7.40 -38.35 -0.28 0.43 16 20 O -0.18 -2.25 10.60 1.68 0.02 -2.23 16 21 C -0.03 -0.34 7.10 -36.96 -0.26 -0.61 16 22 C 0.57 6.19 8.31 34.19 0.28 6.47 16 23 O -0.49 -6.25 17.61 -19.32 -0.34 -6.59 16 24 O -0.50 -3.91 13.44 -42.78 -0.58 -4.49 16 25 C -0.08 -1.01 10.81 -37.21 -0.40 -1.41 16 26 C -0.13 -1.83 6.38 -105.20 -0.67 -2.50 16 27 C -0.06 -0.89 8.75 -39.05 -0.34 -1.23 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.39 6.36 8.56 -40.82 -0.35 6.02 16 33 H 0.40 4.05 8.84 -40.82 -0.36 3.68 16 34 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.42 1.01 9.11 45.56 0.42 1.42 16 37 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.16 2.71 6.21 -52.48 -0.33 2.39 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -33.41 339.82 -7.41 -40.82 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.98 Total: 9.83 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.95 Total: 3.46 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.25 Total: -47.82 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.83 Total: -26.56 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.41 -7.41 -40.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.043 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds