Wall clock time and date at job start Tue Mar 31 2020 11:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47114 * 2 1 4 4 C 1.50697 * 109.47316 * 239.99854 * 2 1 3 5 5 H 1.08002 * 119.99716 * 239.99658 * 4 2 1 6 6 C 1.37873 * 120.00085 * 60.00086 * 4 2 1 7 7 N 1.31516 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00132 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47463 * 89.99745 * 8 6 4 10 10 H 1.48502 * 109.47330 * 209.99835 * 8 6 4 11 11 H 1.48509 * 109.47089 * 330.00019 * 8 6 4 12 12 N 1.46508 * 109.47074 * 119.99747 * 2 1 3 13 13 C 1.34774 * 119.99691 * 275.00173 * 12 2 1 14 14 O 1.21584 * 120.00523 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99541 * 180.02562 * 13 12 2 16 16 C 1.40148 * 119.99845 * 184.60996 * 15 13 12 17 17 C 1.39416 * 119.92218 * 144.86568 * 16 15 13 18 18 C 1.37677 * 120.68572 * 180.02562 * 17 16 15 19 19 C 1.39037 * 120.09348 * 0.03462 * 18 17 16 20 20 O 1.34823 * 133.05684 * 179.64968 * 19 18 17 21 21 C 1.34941 * 110.86573 * 179.88283 * 20 19 18 22 22 C 1.46805 * 125.14165 * 180.15035 * 21 20 19 23 23 O 1.21575 * 120.00131 * 180.30740 * 22 21 20 24 24 O 1.34861 * 119.99626 * 0.30477 * 22 21 20 25 25 C 1.35903 * 109.71918 * 0.41285 * 21 20 19 26 26 C 1.40716 * 119.36571 * 359.96175 * 19 18 17 27 27 C 1.38172 * 119.92112 * 324.88169 * 16 15 13 28 28 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47527 * 300.00104 * 1 2 3 30 30 H 1.09001 * 109.47220 * 60.00529 * 1 2 3 31 31 H 0.97004 * 119.99527 * 180.02562 * 7 6 4 32 32 H 0.97001 * 119.99825 * 94.99962 * 12 2 1 33 33 H 0.96999 * 120.00566 * 4.60152 * 15 13 12 34 34 H 1.08005 * 119.65938 * 0.02562 * 17 16 15 35 35 H 1.08001 * 119.95333 * 180.02562 * 18 17 16 36 36 H 0.96701 * 116.99520 * 180.02562 * 24 22 21 37 37 H 1.07997 * 126.96184 * 179.79065 * 25 21 20 38 38 H 1.08003 * 120.22839 * 359.95821 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.3428 -2.1619 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8582 1.1617 2.4116 15 7 2.5967 -0.6534 3.4575 16 6 2.6392 0.0189 4.6865 17 6 2.3774 -0.6740 5.8676 18 6 2.4144 -0.0291 7.0834 19 6 2.7142 1.3272 7.1444 20 8 2.8143 2.2028 8.1647 21 6 3.1371 3.4326 7.7127 22 6 3.3282 4.6194 8.5554 23 8 3.6134 5.6864 8.0472 24 8 3.1874 4.5260 9.8934 25 6 3.2529 3.4078 6.3588 26 6 2.9790 2.0295 5.9541 27 6 2.9401 1.3669 4.7246 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.7082 1.1607 -3.4845 32 1 2.2489 -1.6318 1.1527 33 1 2.8908 -1.5758 3.3989 34 1 2.1432 -1.7276 5.8285 35 1 2.2101 -0.5775 7.9912 36 1 3.3226 5.3344 10.4065 37 1 3.4981 4.2377 5.7127 38 1 3.1435 1.9047 3.8104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:37 Heat of formation + Delta-G solvation = -105.229303 kcal Electronic energy + Delta-G solvation = -25118.383783 eV Core-core repulsion = 21119.808877 eV Total energy + Delta-G solvation = -3998.574905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.63936 -41.48539 -41.09074 -38.98550 -37.35646 -36.78515 -35.45757 -34.29036 -33.99076 -31.26126 -30.98866 -29.64179 -27.32585 -26.39410 -24.38554 -23.18309 -22.81223 -22.07279 -21.57588 -20.06965 -19.75204 -18.78887 -18.54532 -18.23298 -17.75575 -17.69938 -16.88034 -16.42489 -16.29878 -15.95345 -15.74559 -15.28208 -14.89836 -14.78536 -14.47004 -14.33407 -14.26815 -13.97255 -13.71776 -13.46804 -12.99257 -12.86264 -12.81014 -12.70067 -12.36294 -12.27411 -12.26505 -12.12655 -11.49805 -11.29336 -11.08628 -10.99990 -10.60019 -9.84680 -9.49886 -8.96719 -8.16784 -6.33990 -0.73685 0.17059 0.57457 1.11986 1.46427 1.47218 1.57336 1.65785 1.71458 2.02899 2.13081 2.42729 2.66245 3.14131 3.35426 3.50103 3.58127 3.82621 4.00142 4.13209 4.27548 4.39000 4.70033 4.74837 4.79664 4.92969 4.97073 5.10576 5.14343 5.21024 5.22851 5.29867 5.41729 5.60183 5.62907 5.67096 5.85441 5.96932 6.10439 6.26286 6.74184 6.74835 7.24397 7.35007 7.67947 8.89634 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.002396 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.730880 B =11681.282719 C =12386.898696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H -0.001 1.001 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.712 5.712 13 C 0.691 3.309 14 O -0.626 6.626 15 N -0.671 5.671 16 C 0.143 3.857 17 C -0.081 4.081 18 C -0.082 4.082 19 C 0.049 3.951 20 O -0.175 6.175 21 C -0.028 4.028 22 C 0.582 3.418 23 O -0.514 6.514 24 O -0.492 6.492 25 C -0.097 4.097 26 C -0.150 4.150 27 C -0.088 4.088 28 H 0.042 0.958 29 H 0.010 0.990 30 H 0.066 0.934 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.427 0.573 34 H 0.186 0.814 35 H 0.180 0.820 36 H 0.443 0.557 37 H 0.177 0.823 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -4.236 23.638 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.364 5.364 13 C 0.392 3.608 14 O -0.507 6.507 15 N -0.321 5.321 16 C 0.047 3.953 17 C -0.101 4.101 18 C -0.101 4.101 19 C 0.000 4.000 20 O -0.077 6.077 21 C -0.076 4.076 22 C 0.426 3.574 23 O -0.405 6.405 24 O -0.307 6.307 25 C -0.117 4.117 26 C -0.152 4.152 27 C -0.109 4.109 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.266 0.734 34 H 0.203 0.797 35 H 0.197 0.803 36 H 0.307 0.693 37 H 0.194 0.806 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.482 -3.228 23.381 24.024 hybrid contribution 0.443 0.143 -1.139 1.231 sum 4.925 -3.086 22.241 22.988 Atomic orbital electron populations 1.21922 0.98426 0.99512 0.99483 1.18248 0.90869 0.91693 0.80714 0.98293 1.21530 1.32562 1.13601 0.90559 0.90574 1.25803 0.94937 0.95583 1.02361 1.70062 1.37014 1.23952 1.24608 0.85324 0.78990 0.77968 0.77904 1.19620 1.21495 1.18741 1.45419 1.68705 1.14046 1.08274 1.16276 0.78380 0.84960 0.81229 1.90867 1.58822 1.16299 1.84688 1.42389 1.67546 1.17081 1.05130 1.17533 1.00556 0.91623 0.85549 1.21176 0.98343 1.02284 0.88287 1.20159 1.01996 0.87783 1.00122 1.20129 1.02939 0.92861 0.84066 1.84062 1.73327 1.16254 1.34022 1.20535 1.10870 0.84254 0.91952 1.18694 0.72752 0.84523 0.81407 1.91020 1.45848 1.28160 1.75473 1.84618 1.82375 1.46203 1.17518 1.23003 0.98745 0.96757 0.93225 1.19780 1.07470 0.93684 0.94220 1.20672 0.99284 0.94763 0.96207 0.93934 0.97068 0.91531 0.92577 0.75905 0.73396 0.79675 0.80274 0.69304 0.80558 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 9.26 71.98 0.67 -6.05 16 2 C 0.29 14.60 2.56 44.24 0.11 14.71 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.54 -27.93 8.73 25.60 0.22 -27.71 16 5 H 0.08 3.60 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.70 5.30 84.65 0.45 1.14 16 7 N -0.92 -52.13 11.32 21.45 0.24 -51.89 16 8 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 N -0.71 -27.97 5.07 -461.42 -2.34 -30.31 16 13 C 0.69 26.66 8.37 179.05 1.50 28.16 16 14 O -0.63 -30.30 13.44 -3.98 -0.05 -30.35 16 15 N -0.67 -17.73 5.35 -317.12 -1.70 -19.43 16 16 C 0.14 3.72 6.30 38.08 0.24 3.96 16 17 C -0.08 -1.36 9.93 22.42 0.22 -1.14 16 18 C -0.08 -1.37 10.05 22.33 0.22 -1.15 16 19 C 0.05 1.16 7.40 23.07 0.17 1.33 16 20 O -0.17 -4.21 10.60 -13.26 -0.14 -4.35 16 21 C -0.03 -0.69 7.10 23.97 0.17 -0.52 16 22 C 0.58 12.17 8.31 70.06 0.58 12.75 16 23 O -0.51 -13.05 17.61 19.59 0.34 -12.70 16 24 O -0.49 -6.67 13.44 -55.98 -0.75 -7.43 16 25 C -0.10 -2.60 10.81 23.81 0.26 -2.35 16 26 C -0.15 -4.29 6.38 -20.24 -0.13 -4.42 16 27 C -0.09 -2.80 8.75 22.61 0.20 -2.60 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 31 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.41 12.74 8.56 -92.71 -0.79 11.94 16 33 H 0.43 7.36 8.84 -92.71 -0.82 6.54 16 34 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.44 1.09 9.11 -74.06 -0.67 0.41 16 37 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.12 4.63 6.21 -2.91 -0.02 4.62 16 Total: -1.00 -76.37 339.82 1.40 -74.97 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -1.12 Total: 22.18 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 4.89 Total: 16.12 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.79 Total: -101.63 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.60 Total: -54.83 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -76.37 1.40 -74.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.257 kcal (2) G-P(sol) polarization free energy of solvation -76.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds