Wall clock time and date at job start Tue Mar 31 2020 11:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35729 * 116.99665 * 2 1 4 4 C 1.38391 * 120.07417 * 359.72296 * 3 2 1 5 5 C 1.39507 * 119.93537 * 179.72639 * 4 3 2 6 6 C 1.47770 * 119.96791 * 180.27398 * 5 4 3 7 7 O 1.21591 * 119.99502 * 324.09571 * 6 5 4 8 8 N 1.34769 * 120.00155 * 144.08437 * 6 5 4 9 9 C 1.36770 * 120.00233 * 186.37473 * 8 6 5 10 10 H 1.07993 * 120.00099 * 135.03744 * 9 8 6 11 11 C 1.39122 * 119.99671 * 315.04089 * 9 8 6 12 12 N 1.31314 * 120.00198 * 339.20616 * 11 9 8 13 13 Si 1.86796 * 119.99809 * 159.20518 * 11 9 8 14 14 H 1.48498 * 109.47149 * 65.00442 * 13 11 9 15 15 H 1.48501 * 109.47380 * 185.00300 * 13 11 9 16 16 H 1.48508 * 109.47423 * 305.00319 * 13 11 9 17 17 C 1.46501 * 120.00065 * 6.37551 * 8 6 5 18 18 C 1.53002 * 109.46837 * 103.95251 * 17 8 6 19 19 C 1.50706 * 109.46723 * 179.97438 * 18 17 8 20 20 O 1.20819 * 120.00188 * 359.97438 * 19 18 17 21 21 O 1.34236 * 119.99646 * 180.02562 * 19 18 17 22 22 C 1.39834 * 120.07588 * 0.55326 * 5 4 3 23 23 C 1.37556 * 120.14701 * 359.72214 * 22 5 4 24 24 C 1.39793 * 120.06183 * 0.02562 * 23 22 5 25 25 C 1.43201 * 120.03766 * 179.97438 * 24 23 22 26 26 N 3.52712 * 165.78052 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47339 * 60.00444 * 1 2 3 29 29 H 1.09002 * 109.47129 * 299.99661 * 1 2 3 30 30 H 1.08005 * 120.03297 * 359.97438 * 4 3 2 31 31 H 0.96994 * 120.00015 * 185.03816 * 12 11 9 32 32 H 1.08994 * 109.47161 * 223.95395 * 17 8 6 33 33 H 1.08994 * 109.46979 * 343.95730 * 17 8 6 34 34 H 1.08994 * 109.47363 * 300.00020 * 18 17 8 35 35 H 1.09004 * 109.47094 * 60.00514 * 18 17 8 36 36 H 0.96699 * 116.99668 * 180.02562 * 21 19 18 37 37 H 1.08002 * 119.93010 * 179.69954 * 22 5 4 38 38 H 1.07995 * 119.97201 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2929 2.3710 -0.0058 5 6 1.9291 3.6125 0.0000 6 6 1.1265 4.8532 -0.0001 7 8 0.0827 4.9019 -0.6217 8 7 1.5514 5.9307 0.6891 9 6 0.7492 7.0331 0.7973 10 1 0.6313 7.5234 1.7523 11 6 0.0853 7.5229 -0.3228 12 7 0.5145 7.2183 -1.5259 13 14 -1.4168 8.6138 -0.1154 14 1 -1.0172 9.8881 0.5339 15 1 -2.0078 8.9009 -1.4472 16 1 -2.4196 7.9196 0.7319 17 6 2.8724 5.9210 1.3223 18 6 3.8418 6.7652 0.4925 19 6 5.2006 6.7558 1.1442 20 8 5.3756 6.1377 2.1675 21 8 6.2163 7.4349 0.5883 22 6 3.3256 3.6843 0.0000 23 6 4.0766 2.5318 0.0000 24 6 3.4452 1.2846 -0.0005 25 6 4.2275 0.0851 -0.0010 26 7 4.8481 -0.8664 -0.0004 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 0.2142 2.3164 -0.0107 31 1 0.0973 7.6177 -2.3052 32 1 2.7968 6.3368 2.3269 33 1 3.2403 4.8966 1.3797 34 1 3.9174 6.3494 -0.5122 35 1 3.4740 7.7897 0.4350 36 1 7.0692 7.3988 1.0425 37 1 3.8157 4.6467 -0.0005 38 1 5.1549 2.5905 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599350576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:18 Heat of formation + Delta-G solvation = -71.506246 kcal Electronic energy + Delta-G solvation = -26583.462959 eV Core-core repulsion = 22586.350395 eV Total energy + Delta-G solvation = -3997.112564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53350 -40.00240 -38.77142 -37.16942 -36.05065 -36.02206 -34.87502 -32.61782 -31.15827 -30.40209 -30.07292 -27.46858 -25.71125 -24.69624 -23.29995 -22.15466 -20.82422 -19.90866 -19.05770 -18.04165 -17.95098 -16.69468 -16.24788 -16.21256 -15.87973 -15.81447 -15.24323 -14.76967 -14.71038 -14.27703 -13.96296 -13.68374 -13.61360 -13.41095 -13.09089 -12.84477 -12.63560 -12.42500 -12.18618 -12.02542 -11.74307 -11.46778 -11.45222 -11.26030 -11.10669 -11.07811 -10.95152 -10.76726 -10.47483 -10.41328 -10.21176 -8.98517 -8.84350 -8.42845 -8.09121 -7.41700 -6.35061 -4.08456 0.75919 1.46535 2.41046 2.83339 2.94522 3.14023 3.20675 3.22322 3.28425 3.32835 3.82968 4.02109 4.12761 4.34126 4.60709 4.92617 5.02741 5.06314 5.18653 5.23117 5.24747 5.34649 5.44147 5.51323 5.51782 5.55708 5.77454 5.87356 5.97097 6.20712 6.28133 6.29358 6.50613 6.59745 6.66967 6.68916 7.23772 7.42303 7.66721 8.02230 8.07917 8.76282 8.87771 9.36151 9.97441 10.72142 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.005394 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.758342 B = 5189.470340 C = 7488.483416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.171 3.829 4 C -0.173 4.173 5 C -0.020 4.020 6 C 0.496 3.504 7 O -0.520 6.520 8 N -0.432 5.432 9 C -0.356 4.356 10 H 0.085 0.915 11 C 0.077 3.923 12 N -0.816 5.816 13 Si 0.915 3.085 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.091 3.909 18 C -0.128 4.128 19 C 0.480 3.520 20 O -0.521 6.521 21 O -0.519 6.519 22 C -0.156 4.156 23 C -0.037 4.037 24 C -0.075 4.075 25 C 0.275 3.725 26 N -0.437 5.437 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.145 0.855 31 H 0.270 0.730 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.403 0.597 37 H 0.149 0.851 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 -3.668 2.563 6.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.122 3.878 4 C -0.192 4.192 5 C -0.025 4.025 6 C 0.284 3.716 7 O -0.398 6.398 8 N -0.152 5.152 9 C -0.482 4.482 10 H 0.103 0.897 11 C -0.136 4.136 12 N -0.447 5.447 13 Si 0.741 3.259 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.033 4.033 18 C -0.167 4.167 19 C 0.323 3.677 20 O -0.409 6.409 21 O -0.331 6.331 22 C -0.175 4.175 23 C -0.058 4.058 24 C -0.080 4.080 25 C -0.040 4.040 26 N -0.113 5.113 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.261 0.739 37 H 0.166 0.834 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.245 -5.473 2.106 7.868 hybrid contribution -0.498 1.159 0.225 1.282 sum 4.747 -4.314 2.331 6.825 Atomic orbital electron populations 1.23173 0.77487 1.04040 1.02424 1.86037 1.22178 1.26444 1.87996 1.18740 0.90217 0.84665 0.94135 1.21169 1.00891 0.90126 1.07052 1.20636 0.93705 0.95189 0.92966 1.17880 0.86325 0.81985 0.85429 1.90663 1.24581 1.82361 1.42155 1.43097 1.11799 1.12309 1.47992 1.19040 1.26536 1.07302 0.95327 0.89698 1.25313 0.97937 0.95798 0.94567 1.69762 1.38374 1.38338 0.98258 0.86235 0.82589 0.79416 0.77641 1.20267 1.21039 1.19684 1.22002 0.84666 1.00337 0.96344 1.21905 0.86867 1.06598 1.01315 1.23921 0.86919 0.74342 0.82534 1.90699 1.84182 1.41610 1.24441 1.84614 1.22636 1.68847 1.56962 1.21736 0.93287 0.99212 1.03265 1.20890 1.00028 0.89483 0.95380 1.15262 0.88083 0.88363 1.16246 1.25390 0.92935 0.92609 0.93031 1.81161 1.09558 1.10238 1.10348 0.88161 0.91799 0.91958 0.83731 0.92014 0.91134 0.88772 0.87432 0.86045 0.73904 0.83400 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.38 9.92 -18.89 -0.19 -4.57 16 3 C 0.17 2.56 6.68 -38.79 -0.26 2.30 16 4 C -0.17 -2.82 8.59 -39.05 -0.34 -3.15 16 5 C -0.02 -0.37 5.45 -104.93 -0.57 -0.94 16 6 C 0.50 11.32 6.82 -12.37 -0.08 11.24 16 7 O -0.52 -13.93 14.41 5.29 0.08 -13.85 16 8 N -0.43 -9.52 2.53 -115.92 -0.29 -9.82 16 9 C -0.36 -8.64 9.01 -15.02 -0.14 -8.78 16 10 H 0.09 1.99 7.92 -52.49 -0.42 1.57 16 11 C 0.08 1.94 4.30 -17.44 -0.08 1.87 16 12 N -0.82 -21.57 11.79 55.50 0.65 -20.92 16 13 Si 0.91 19.94 29.61 -169.99 -5.03 14.91 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 17 C 0.09 1.59 4.15 -4.04 -0.02 1.58 16 18 C -0.13 -2.01 5.11 -27.88 -0.14 -2.15 16 19 C 0.48 6.65 8.31 36.01 0.30 6.95 16 20 O -0.52 -8.26 16.74 -18.74 -0.31 -8.57 16 21 O -0.52 -5.81 13.42 -39.27 -0.53 -6.34 16 22 C -0.16 -2.42 7.34 -39.23 -0.29 -2.71 16 23 C -0.04 -0.50 9.73 -39.25 -0.38 -0.88 16 24 C -0.07 -1.09 5.75 -106.65 -0.61 -1.70 16 25 C 0.27 4.21 14.85 -22.47 -0.33 3.88 16 26 N -0.44 -7.30 18.54 41.84 0.78 -6.52 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 29 H 0.06 0.60 7.67 -51.93 -0.40 0.21 16 30 H 0.15 2.30 6.23 -52.48 -0.33 1.97 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 33 H 0.09 1.54 3.94 -51.93 -0.20 1.34 16 34 H 0.11 1.69 7.00 -51.93 -0.36 1.33 16 35 H 0.12 2.03 8.06 -51.93 -0.42 1.61 16 36 H 0.40 2.62 9.10 45.56 0.41 3.04 16 37 H 0.15 2.22 3.42 -52.49 -0.18 2.04 16 38 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -32.19 337.78 -4.40 -36.58 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -2.69 Total: 5.27 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.95 Total: 8.74 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 1.14 Total: -37.26 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.95 Total: -33.33 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.19 -4.40 -36.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599350576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.925 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds