Wall clock time and date at job start Tue Mar 31 2020 11:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35729 * 116.99665 * 2 1 4 4 C 1.38391 * 120.07417 * 359.72296 * 3 2 1 5 5 C 1.39507 * 119.93537 * 179.72639 * 4 3 2 6 6 C 1.47770 * 119.96791 * 180.27398 * 5 4 3 7 7 O 1.21591 * 119.99502 * 324.09571 * 6 5 4 8 8 N 1.34769 * 120.00155 * 144.08437 * 6 5 4 9 9 C 1.36770 * 120.00233 * 186.37473 * 8 6 5 10 10 H 1.07993 * 120.00099 * 135.03744 * 9 8 6 11 11 C 1.39122 * 119.99671 * 315.04089 * 9 8 6 12 12 N 1.31314 * 120.00198 * 339.20616 * 11 9 8 13 13 Si 1.86796 * 119.99809 * 159.20518 * 11 9 8 14 14 H 1.48498 * 109.47149 * 65.00442 * 13 11 9 15 15 H 1.48501 * 109.47380 * 185.00300 * 13 11 9 16 16 H 1.48508 * 109.47423 * 305.00319 * 13 11 9 17 17 C 1.46501 * 120.00065 * 6.37551 * 8 6 5 18 18 C 1.53002 * 109.46837 * 103.95251 * 17 8 6 19 19 C 1.50706 * 109.46723 * 179.97438 * 18 17 8 20 20 O 1.20819 * 120.00188 * 359.97438 * 19 18 17 21 21 O 1.34236 * 119.99646 * 180.02562 * 19 18 17 22 22 C 1.39834 * 120.07588 * 0.55326 * 5 4 3 23 23 C 1.37556 * 120.14701 * 359.72214 * 22 5 4 24 24 C 1.39793 * 120.06183 * 0.02562 * 23 22 5 25 25 C 1.43201 * 120.03766 * 179.97438 * 24 23 22 26 26 N 3.52712 * 165.78052 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47339 * 60.00444 * 1 2 3 29 29 H 1.09002 * 109.47129 * 299.99661 * 1 2 3 30 30 H 1.08005 * 120.03297 * 359.97438 * 4 3 2 31 31 H 0.96994 * 120.00015 * 185.03816 * 12 11 9 32 32 H 1.08994 * 109.47161 * 223.95395 * 17 8 6 33 33 H 1.08994 * 109.46979 * 343.95730 * 17 8 6 34 34 H 1.08994 * 109.47363 * 300.00020 * 18 17 8 35 35 H 1.09004 * 109.47094 * 60.00514 * 18 17 8 36 36 H 0.96699 * 116.99668 * 180.02562 * 21 19 18 37 37 H 1.08002 * 119.93010 * 179.69954 * 22 5 4 38 38 H 1.07995 * 119.97201 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2929 2.3710 -0.0058 5 6 1.9291 3.6125 0.0000 6 6 1.1265 4.8532 -0.0001 7 8 0.0827 4.9019 -0.6217 8 7 1.5514 5.9307 0.6891 9 6 0.7492 7.0331 0.7973 10 1 0.6313 7.5234 1.7523 11 6 0.0853 7.5229 -0.3228 12 7 0.5145 7.2183 -1.5259 13 14 -1.4168 8.6138 -0.1154 14 1 -1.0172 9.8881 0.5339 15 1 -2.0078 8.9009 -1.4472 16 1 -2.4196 7.9196 0.7319 17 6 2.8724 5.9210 1.3223 18 6 3.8418 6.7652 0.4925 19 6 5.2006 6.7558 1.1442 20 8 5.3756 6.1377 2.1675 21 8 6.2163 7.4349 0.5883 22 6 3.3256 3.6843 0.0000 23 6 4.0766 2.5318 0.0000 24 6 3.4452 1.2846 -0.0005 25 6 4.2275 0.0851 -0.0010 26 7 4.8481 -0.8664 -0.0004 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 0.2142 2.3164 -0.0107 31 1 0.0973 7.6177 -2.3052 32 1 2.7968 6.3368 2.3269 33 1 3.2403 4.8966 1.3797 34 1 3.9174 6.3494 -0.5122 35 1 3.4740 7.7897 0.4350 36 1 7.0692 7.3988 1.0425 37 1 3.8157 4.6467 -0.0005 38 1 5.1549 2.5905 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599350576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:18 Heat of formation + Delta-G solvation = -92.679865 kcal Electronic energy + Delta-G solvation = -26584.381116 eV Core-core repulsion = 22586.350395 eV Total energy + Delta-G solvation = -3998.030721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81284 -41.11787 -40.20848 -38.43061 -37.33766 -37.15011 -36.47888 -34.31931 -32.51221 -31.91220 -31.29062 -28.48420 -27.31520 -26.08321 -24.75312 -23.33732 -22.07997 -21.38870 -20.31063 -19.44223 -19.08161 -18.14503 -17.55206 -17.39889 -17.13708 -16.88039 -16.83875 -16.27691 -16.07424 -15.55985 -15.37081 -15.10660 -14.86467 -14.69753 -14.40351 -14.21028 -13.93359 -13.74508 -13.46886 -13.30895 -13.17549 -12.91532 -12.72294 -12.65415 -12.46740 -12.37688 -12.34227 -12.28567 -12.10027 -11.69002 -11.49216 -10.80721 -10.27291 -10.03800 -9.32526 -9.21565 -8.21944 -5.98476 -0.51794 0.26715 1.29838 1.44286 1.52470 1.55922 1.60494 1.65917 2.10294 2.12437 2.38713 2.48552 2.77470 2.85295 3.02802 3.29536 3.76903 3.85300 3.98817 4.04546 4.07072 4.18433 4.34399 4.36711 4.38885 4.58738 4.65843 4.70062 4.72833 4.91557 4.94139 5.04488 5.21092 5.33034 5.47065 5.53384 5.71038 6.11158 6.20418 6.45062 6.96699 7.09649 7.13827 7.58180 8.22412 8.85393 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.005394 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.758342 B = 5189.470340 C = 7488.483416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.178 3.822 4 C -0.174 4.174 5 C -0.040 4.040 6 C 0.489 3.511 7 O -0.572 6.572 8 N -0.443 5.443 9 C -0.371 4.371 10 H 0.087 0.913 11 C 0.037 3.963 12 N -0.850 5.850 13 Si 0.965 3.035 14 H -0.258 1.258 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.092 3.908 18 C -0.122 4.122 19 C 0.498 3.502 20 O -0.539 6.539 21 O -0.512 6.512 22 C -0.155 4.155 23 C -0.016 4.016 24 C -0.069 4.069 25 C 0.290 3.710 26 N -0.457 5.457 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.428 0.572 37 H 0.154 0.846 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -4.455 3.215 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.129 3.871 4 C -0.194 4.194 5 C -0.045 4.045 6 C 0.279 3.721 7 O -0.453 6.453 8 N -0.162 5.162 9 C -0.498 4.498 10 H 0.105 0.895 11 C -0.173 4.173 12 N -0.483 5.483 13 Si 0.791 3.209 14 H -0.182 1.182 15 H -0.216 1.216 16 H -0.206 1.206 17 C -0.031 4.031 18 C -0.161 4.161 19 C 0.341 3.659 20 O -0.429 6.429 21 O -0.325 6.325 22 C -0.173 4.173 23 C -0.036 4.036 24 C -0.073 4.073 25 C -0.024 4.024 26 N -0.133 5.133 27 H 0.147 0.853 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.289 0.711 37 H 0.171 0.829 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.071 -6.242 2.791 9.836 hybrid contribution -0.976 1.256 0.065 1.592 sum 6.095 -4.986 2.856 8.376 Atomic orbital electron populations 1.23463 0.75651 1.06078 1.02681 1.86045 1.24068 1.25725 1.87610 1.18713 0.90434 0.84586 0.93377 1.21112 1.00991 0.90057 1.07210 1.20329 0.94654 0.93666 0.95859 1.18531 0.86136 0.83261 0.84188 1.90613 1.26907 1.83566 1.44222 1.43248 1.13311 1.11774 1.47863 1.19257 1.27337 1.07922 0.95276 0.89511 1.25973 0.99783 0.97070 0.94441 1.69852 1.39641 1.40172 0.98657 0.85446 0.79669 0.78776 0.77052 1.18238 1.21599 1.20637 1.22081 0.83146 1.01755 0.96135 1.21637 0.88018 1.05320 1.01088 1.23222 0.86697 0.74164 0.81804 1.90705 1.84514 1.42616 1.25105 1.84538 1.23460 1.67732 1.56812 1.21727 0.92020 1.00322 1.03231 1.21177 1.01593 0.87975 0.92841 1.15379 0.87838 0.88577 1.15553 1.25316 0.92380 0.92301 0.92376 1.81192 1.10341 1.10794 1.11000 0.85280 0.91870 0.91433 0.84033 0.92671 0.91192 0.87215 0.87490 0.87387 0.71052 0.82886 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -8.38 9.92 -90.52 -0.90 -9.28 16 3 C 0.18 5.02 6.68 22.79 0.15 5.17 16 4 C -0.17 -5.60 8.59 22.61 0.19 -5.41 16 5 C -0.04 -1.47 5.45 -20.06 -0.11 -1.58 16 6 C 0.49 22.90 6.82 86.77 0.59 23.49 16 7 O -0.57 -31.86 14.41 -4.00 -0.06 -31.92 16 8 N -0.44 -19.87 2.53 -638.94 -1.62 -21.49 16 9 C -0.37 -18.45 9.01 84.14 0.76 -17.69 16 10 H 0.09 4.14 7.92 -2.91 -0.02 4.12 16 11 C 0.04 1.89 4.30 84.98 0.37 2.26 16 12 N -0.85 -46.51 11.79 21.69 0.26 -46.26 16 13 Si 0.97 41.82 29.61 68.60 2.03 43.85 16 14 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.09 3.20 4.15 86.38 0.36 3.56 16 18 C -0.12 -3.73 5.11 29.85 0.15 -3.58 16 19 C 0.50 12.71 8.31 71.24 0.59 13.30 16 20 O -0.54 -15.78 16.74 21.98 0.37 -15.41 16 21 O -0.51 -9.93 13.42 -51.47 -0.69 -10.63 16 22 C -0.15 -4.50 7.34 22.49 0.17 -4.33 16 23 C -0.02 -0.37 9.73 22.48 0.22 -0.15 16 24 C -0.07 -1.81 5.75 -21.18 -0.12 -1.93 16 25 C 0.29 8.08 14.85 88.33 1.31 9.39 16 26 N -0.46 -14.13 18.54 19.00 0.35 -13.77 16 27 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.06 1.23 7.65 -2.39 -0.02 1.21 16 29 H 0.07 1.23 7.67 -2.39 -0.02 1.21 16 30 H 0.14 4.58 6.23 -2.91 -0.02 4.56 16 31 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.07 2.42 8.09 -2.39 -0.02 2.40 16 33 H 0.11 3.46 3.94 -2.39 -0.01 3.46 16 34 H 0.11 3.29 7.00 -2.39 -0.02 3.27 16 35 H 0.11 3.63 8.06 -2.38 -0.02 3.61 16 36 H 0.43 4.02 9.10 -74.06 -0.67 3.35 16 37 H 0.15 4.31 3.42 -2.91 -0.01 4.30 16 38 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -70.85 337.78 5.96 -64.89 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.48 Total: 16.10 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 5.74 Total: 23.91 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -1.01 Total: -81.52 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -1.28 Total: -67.23 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -70.85 5.96 -64.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599350576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.789 kcal (2) G-P(sol) polarization free energy of solvation -70.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds