Wall clock time and date at job start Tue Mar 31 2020 12:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38622 * 119.15727 * 2 1 4 4 C 1.39433 * 119.34801 * 180.02562 * 3 2 1 5 5 C 1.47668 * 121.09548 * 180.02562 * 4 3 2 6 6 O 1.21610 * 119.99877 * 234.21054 * 5 4 3 7 7 N 1.34775 * 120.00236 * 54.21625 * 5 4 3 8 8 C 1.36717 * 120.00345 * 184.45061 * 7 5 4 9 9 H 1.08008 * 120.00020 * 321.48027 * 8 7 5 10 10 C 1.39139 * 120.00553 * 141.47995 * 8 7 5 11 11 N 1.31299 * 120.00703 * 159.00946 * 10 8 7 12 12 Si 1.86803 * 119.99702 * 339.01417 * 10 8 7 13 13 H 1.48494 * 109.47458 * 89.07043 * 12 10 8 14 14 H 1.48507 * 109.46839 * 209.07174 * 12 10 8 15 15 H 1.48499 * 109.47260 * 329.06547 * 12 10 8 16 16 C 1.46499 * 119.99699 * 4.44599 * 7 5 4 17 17 C 1.50701 * 109.47289 * 83.90942 * 16 7 5 18 18 O 1.20829 * 119.99389 * 359.97438 * 17 16 7 19 19 O 1.34230 * 120.00409 * 180.02562 * 17 16 7 20 20 C 1.41369 * 117.80337 * 0.02562 * 4 3 2 21 21 C 1.41065 * 133.90139 * 180.02562 * 20 4 3 22 22 N 1.30263 * 108.58626 * 179.97438 * 21 20 4 23 23 N 1.39997 * 109.73888 * 359.97438 * 22 21 20 24 24 C 1.46498 * 125.91608 * 180.02562 * 23 22 21 25 25 C 1.37073 * 108.17765 * 0.02562 * 23 22 21 26 26 N 1.31483 * 119.15813 * 179.78116 * 2 1 3 27 27 H 1.09004 * 109.47069 * 90.00119 * 1 2 3 28 28 H 1.08995 * 109.47253 * 209.99855 * 1 2 3 29 29 H 1.08998 * 109.47459 * 330.00482 * 1 2 3 30 30 H 1.08002 * 120.32626 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00606 * 180.02562 * 11 10 8 32 32 H 1.09008 * 109.47194 * 203.90279 * 16 7 5 33 33 H 1.08998 * 109.47331 * 323.90196 * 16 7 5 34 34 H 0.96701 * 117.00084 * 179.97438 * 19 17 16 35 35 H 1.08004 * 125.70904 * 359.94266 * 21 20 4 36 36 H 1.09001 * 109.47016 * 269.97853 * 24 23 22 37 37 H 1.09005 * 109.46972 * 29.97332 * 24 23 22 38 38 H 1.08993 * 109.47335 * 149.97211 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1824 1.2106 0.0000 4 6 3.5767 1.2152 -0.0005 5 6 4.3352 2.4822 0.0000 6 8 5.1756 2.6882 -0.8545 7 7 4.0961 3.4104 0.9475 8 6 4.7318 4.6196 0.8958 9 1 5.7652 4.6737 0.5863 10 6 4.0478 5.7807 1.2420 11 7 4.7147 6.8557 1.5936 12 14 2.1803 5.8101 1.2068 13 1 1.6534 5.3793 2.5265 14 1 1.7125 7.1886 0.9131 15 1 1.6905 4.8861 0.1525 16 6 3.1549 3.1234 2.0329 17 6 3.8640 2.3657 3.1256 18 8 5.0354 2.0929 3.0093 19 8 3.1942 1.9929 4.2275 20 6 4.2403 -0.0331 -0.0016 21 6 5.5969 -0.4197 -0.0020 22 7 5.6578 -1.7209 -0.0026 23 7 4.3637 -2.2548 -0.0020 24 6 4.0217 -3.6793 -0.0019 25 6 3.4717 -1.2140 -0.0017 26 7 2.1477 -1.1482 0.0044 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6340 2.1410 -0.0004 31 1 4.2378 7.6650 1.8352 32 1 2.7660 4.0596 2.4336 33 1 2.3306 2.5220 1.6496 34 1 3.6915 1.5085 4.9007 35 1 6.4435 0.2509 -0.0023 36 1 3.9361 -4.0325 -1.0296 37 1 4.8028 -4.2404 0.5112 38 1 3.0720 -3.8250 0.5127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600077974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:23 Heat of formation + Delta-G solvation = 12.102061 kcal Electronic energy + Delta-G solvation = -27500.014667 eV Core-core repulsion = 23538.820383 eV Total energy + Delta-G solvation = -3961.194284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69265 -40.05166 -38.82982 -37.99541 -35.80039 -34.98276 -33.80837 -32.46611 -31.85310 -31.48816 -28.20806 -27.50808 -26.79153 -25.78766 -23.32619 -22.21002 -21.80198 -21.16962 -19.11847 -17.84730 -17.54911 -17.44133 -17.02599 -16.69599 -16.10415 -15.86259 -15.63812 -15.00367 -14.71903 -14.32501 -14.08691 -13.92258 -13.61052 -13.55307 -13.02348 -12.95031 -12.85665 -12.63501 -12.54100 -12.46649 -12.14515 -11.99954 -11.69854 -11.17798 -11.09354 -10.90879 -10.73226 -10.29296 -10.20140 -10.10622 -9.76581 -9.27533 -8.84581 -8.67546 -8.25721 -8.06286 -6.58777 -4.18958 0.63312 1.24905 2.18927 2.58201 2.63744 2.82540 2.99137 3.05900 3.13144 3.51694 3.87337 3.92292 4.00545 4.07115 4.48484 4.58805 4.84563 4.91417 4.97550 5.13575 5.17413 5.28925 5.35330 5.38534 5.47107 5.50192 5.56742 5.59931 5.64381 5.74693 5.89147 6.13516 6.31408 6.56398 6.82722 6.87691 7.26424 7.50625 7.93855 8.01016 8.20661 8.30835 8.68463 9.04232 9.40600 10.52185 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.005424 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.186855 B = 5161.358731 C = 5516.507079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.198 3.802 3 C -0.207 4.207 4 C 0.029 3.971 5 C 0.513 3.487 6 O -0.530 6.530 7 N -0.432 5.432 8 C -0.319 4.319 9 H 0.113 0.887 10 C 0.063 3.937 11 N -0.847 5.847 12 Si 0.859 3.141 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.255 1.255 16 C 0.080 3.920 17 C 0.457 3.543 18 O -0.491 6.491 19 O -0.524 6.524 20 C -0.196 4.196 21 C 0.108 3.892 22 N -0.249 5.249 23 N -0.398 5.398 24 C 0.117 3.883 25 C 0.317 3.683 26 N -0.505 5.505 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.279 0.721 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.401 0.599 35 H 0.200 0.800 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 -14.068 1.713 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.049 3.951 3 C -0.230 4.230 4 C 0.015 3.985 5 C 0.301 3.699 6 O -0.409 6.409 7 N -0.153 5.153 8 C -0.446 4.446 9 H 0.131 0.869 10 C -0.145 4.145 11 N -0.481 5.481 12 Si 0.685 3.315 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.179 1.179 16 C -0.045 4.045 17 C 0.297 3.703 18 O -0.376 6.376 19 O -0.336 6.336 20 C -0.207 4.207 21 C -0.088 4.088 22 N -0.063 5.063 23 N -0.189 5.189 24 C -0.024 4.024 25 C 0.076 3.924 26 N -0.222 5.222 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.166 0.834 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.259 0.741 35 H 0.216 0.784 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.445 -15.629 0.988 18.288 hybrid contribution -0.603 1.281 0.633 1.550 sum -10.048 -14.348 1.622 17.592 Atomic orbital electron populations 1.20791 0.87839 1.03912 1.03577 1.21047 0.96572 0.86499 0.90946 1.21961 0.93122 0.99758 1.08144 1.20368 0.93578 0.93418 0.91139 1.17886 0.85770 0.83215 0.83003 1.90718 1.33578 1.78402 1.38207 1.43139 1.40209 1.14478 1.17524 1.19061 0.98034 0.79910 1.47603 0.86933 1.25423 0.98611 0.95093 0.95348 1.69679 1.36902 1.03120 1.38436 0.87276 0.86025 0.79198 0.79018 1.19339 1.20277 1.17887 1.22009 0.93687 1.01515 0.87330 1.24436 0.86630 0.77002 0.82283 1.90714 1.17068 1.51283 1.78509 1.84553 1.47967 1.70629 1.30443 1.19314 0.94876 0.93198 1.13293 1.23924 0.96813 0.91814 0.96264 1.76912 0.98473 1.10714 1.20168 1.48249 1.01166 1.05093 1.64416 1.21723 1.02129 0.75557 1.02958 1.18894 0.88860 0.87350 0.97247 1.66240 1.06181 1.30021 1.19710 0.89806 0.90176 0.89938 0.83445 0.91066 0.86138 0.87079 0.74052 0.78360 0.91338 0.89568 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.14 36.01 0.37 -0.60 16 2 C 0.20 2.78 6.77 -82.60 -0.56 2.22 16 3 C -0.21 -3.31 7.36 -39.00 -0.29 -3.60 16 4 C 0.03 0.58 5.01 -104.41 -0.52 0.05 16 5 C 0.51 12.02 6.85 -12.41 -0.08 11.94 16 6 O -0.53 -14.11 16.96 5.27 0.09 -14.02 16 7 N -0.43 -10.21 1.71 -117.24 -0.20 -10.41 16 8 C -0.32 -8.67 9.37 -15.04 -0.14 -8.81 16 9 H 0.11 3.48 7.89 -52.48 -0.41 3.07 16 10 C 0.06 1.64 5.28 -17.44 -0.09 1.55 16 11 N -0.85 -23.18 13.95 55.51 0.77 -22.41 16 12 Si 0.86 18.07 25.24 -169.99 -4.29 13.78 16 13 H -0.27 -5.07 6.41 56.52 0.36 -4.70 16 14 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 16 C 0.08 1.58 4.34 -5.19 -0.02 1.55 16 17 C 0.46 8.85 8.32 36.01 0.30 9.15 16 18 O -0.49 -11.13 17.04 -18.75 -0.32 -11.45 16 19 O -0.52 -7.79 13.42 -39.26 -0.53 -8.32 16 20 C -0.20 -3.75 6.04 -106.63 -0.64 -4.40 16 21 C 0.11 1.99 11.90 -17.15 -0.20 1.79 16 22 N -0.25 -4.29 12.45 30.78 0.38 -3.91 16 23 N -0.40 -6.25 4.07 -67.20 -0.27 -6.53 16 24 C 0.12 1.23 11.48 59.85 0.69 1.92 16 25 C 0.32 5.46 8.00 -156.05 -1.25 4.21 16 26 N -0.50 -7.88 10.25 -8.61 -0.09 -7.97 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.15 2.09 7.23 -52.49 -0.38 1.71 16 31 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.12 2.39 3.45 -51.92 -0.18 2.21 16 33 H 0.11 1.83 4.46 -51.93 -0.23 1.60 16 34 H 0.40 4.17 9.10 45.56 0.41 4.59 16 35 H 0.20 3.56 8.06 -52.48 -0.42 3.14 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -34.69 333.86 -4.80 -39.48 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -2.92 Total: 9.74 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: -2.46 Total: 16.97 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.60 Total: -51.22 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.76 Total: -33.78 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.29 Total: 13.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.69 -4.80 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.583 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds