Wall clock time and date at job start Tue Mar 31 2020 12:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38622 * 119.15727 * 2 1 4 4 C 1.39433 * 119.34801 * 180.02562 * 3 2 1 5 5 C 1.47668 * 121.09548 * 180.02562 * 4 3 2 6 6 O 1.21610 * 119.99877 * 234.21054 * 5 4 3 7 7 N 1.34775 * 120.00236 * 54.21625 * 5 4 3 8 8 C 1.36717 * 120.00345 * 184.45061 * 7 5 4 9 9 H 1.08008 * 120.00020 * 321.48027 * 8 7 5 10 10 C 1.39139 * 120.00553 * 141.47995 * 8 7 5 11 11 N 1.31299 * 120.00703 * 159.00946 * 10 8 7 12 12 Si 1.86803 * 119.99702 * 339.01417 * 10 8 7 13 13 H 1.48494 * 109.47458 * 89.07043 * 12 10 8 14 14 H 1.48507 * 109.46839 * 209.07174 * 12 10 8 15 15 H 1.48499 * 109.47260 * 329.06547 * 12 10 8 16 16 C 1.46499 * 119.99699 * 4.44599 * 7 5 4 17 17 C 1.50701 * 109.47289 * 83.90942 * 16 7 5 18 18 O 1.20829 * 119.99389 * 359.97438 * 17 16 7 19 19 O 1.34230 * 120.00409 * 180.02562 * 17 16 7 20 20 C 1.41369 * 117.80337 * 0.02562 * 4 3 2 21 21 C 1.41065 * 133.90139 * 180.02562 * 20 4 3 22 22 N 1.30263 * 108.58626 * 179.97438 * 21 20 4 23 23 N 1.39997 * 109.73888 * 359.97438 * 22 21 20 24 24 C 1.46498 * 125.91608 * 180.02562 * 23 22 21 25 25 C 1.37073 * 108.17765 * 0.02562 * 23 22 21 26 26 N 1.31483 * 119.15813 * 179.78116 * 2 1 3 27 27 H 1.09004 * 109.47069 * 90.00119 * 1 2 3 28 28 H 1.08995 * 109.47253 * 209.99855 * 1 2 3 29 29 H 1.08998 * 109.47459 * 330.00482 * 1 2 3 30 30 H 1.08002 * 120.32626 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00606 * 180.02562 * 11 10 8 32 32 H 1.09008 * 109.47194 * 203.90279 * 16 7 5 33 33 H 1.08998 * 109.47331 * 323.90196 * 16 7 5 34 34 H 0.96701 * 117.00084 * 179.97438 * 19 17 16 35 35 H 1.08004 * 125.70904 * 359.94266 * 21 20 4 36 36 H 1.09001 * 109.47016 * 269.97853 * 24 23 22 37 37 H 1.09005 * 109.46972 * 29.97332 * 24 23 22 38 38 H 1.08993 * 109.47335 * 149.97211 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1824 1.2106 0.0000 4 6 3.5767 1.2152 -0.0005 5 6 4.3352 2.4822 0.0000 6 8 5.1756 2.6882 -0.8545 7 7 4.0961 3.4104 0.9475 8 6 4.7318 4.6196 0.8958 9 1 5.7652 4.6737 0.5863 10 6 4.0478 5.7807 1.2420 11 7 4.7147 6.8557 1.5936 12 14 2.1803 5.8101 1.2068 13 1 1.6534 5.3793 2.5265 14 1 1.7125 7.1886 0.9131 15 1 1.6905 4.8861 0.1525 16 6 3.1549 3.1234 2.0329 17 6 3.8640 2.3657 3.1256 18 8 5.0354 2.0929 3.0093 19 8 3.1942 1.9929 4.2275 20 6 4.2403 -0.0331 -0.0016 21 6 5.5969 -0.4197 -0.0020 22 7 5.6578 -1.7209 -0.0026 23 7 4.3637 -2.2548 -0.0020 24 6 4.0217 -3.6793 -0.0019 25 6 3.4717 -1.2140 -0.0017 26 7 2.1477 -1.1482 0.0044 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6340 2.1410 -0.0004 31 1 4.2378 7.6650 1.8352 32 1 2.7660 4.0596 2.4336 33 1 2.3306 2.5220 1.6496 34 1 3.6915 1.5085 4.9007 35 1 6.4435 0.2509 -0.0023 36 1 3.9361 -4.0325 -1.0296 37 1 4.8028 -4.2404 0.5112 38 1 3.0720 -3.8250 0.5127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600077974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:23 Heat of formation + Delta-G solvation = -14.421662 kcal Electronic energy + Delta-G solvation = -27501.164822 eV Core-core repulsion = 23538.820383 eV Total energy + Delta-G solvation = -3962.344439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.99148 -41.61458 -40.40112 -39.32736 -37.33046 -36.74462 -35.09928 -34.29652 -32.98918 -32.77852 -29.86213 -28.58114 -27.85977 -27.55284 -24.80929 -23.47293 -23.30881 -22.48933 -20.67164 -19.31526 -19.28498 -18.83241 -18.40397 -18.26472 -17.63130 -17.23534 -16.99095 -16.64209 -16.17120 -15.67049 -15.48983 -15.25748 -15.00105 -14.83054 -14.55833 -14.48855 -14.17830 -13.83244 -13.79076 -13.64287 -13.32613 -12.98901 -12.87310 -12.71392 -12.62821 -12.35316 -12.22170 -11.94935 -11.75762 -11.64954 -11.30771 -10.96549 -10.47226 -10.03520 -9.92346 -9.45020 -8.56026 -6.26555 -0.69774 -0.00787 1.04512 1.11355 1.16312 1.22112 1.35252 1.47469 1.54027 2.00983 2.17320 2.35762 2.53094 2.88268 2.96131 3.16608 3.44867 3.59898 3.67802 3.83472 4.00400 4.08629 4.23262 4.26815 4.37019 4.38253 4.41348 4.62010 4.76373 4.89788 4.92827 5.00956 5.16610 5.38209 5.45094 5.53394 5.76198 5.96351 6.20303 6.30961 6.71834 6.72397 6.91610 7.06211 7.53527 8.60228 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.005424 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.186855 B = 5161.358731 C = 5516.507079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.210 3.790 3 C -0.197 4.197 4 C 0.004 3.996 5 C 0.512 3.488 6 O -0.583 6.583 7 N -0.438 5.438 8 C -0.345 4.345 9 H 0.043 0.957 10 C 0.015 3.985 11 N -0.898 5.898 12 Si 0.927 3.073 13 H -0.220 1.220 14 H -0.276 1.276 15 H -0.231 1.231 16 C 0.076 3.924 17 C 0.463 3.537 18 O -0.537 6.537 19 O -0.502 6.502 20 C -0.225 4.225 21 C 0.082 3.918 22 N -0.251 5.251 23 N -0.391 5.391 24 C 0.106 3.894 25 C 0.310 3.690 26 N -0.497 5.497 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.174 0.826 31 H 0.286 0.714 32 H 0.127 0.873 33 H 0.152 0.848 34 H 0.425 0.575 35 H 0.184 0.816 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 -16.216 2.743 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.060 3.940 3 C -0.219 4.219 4 C -0.011 4.011 5 C 0.301 3.699 6 O -0.466 6.466 7 N -0.159 5.159 8 C -0.473 4.473 9 H 0.061 0.939 10 C -0.190 4.190 11 N -0.534 5.534 12 Si 0.746 3.254 13 H -0.144 1.144 14 H -0.202 1.202 15 H -0.153 1.153 16 C -0.048 4.048 17 C 0.304 3.696 18 O -0.425 6.425 19 O -0.315 6.315 20 C -0.236 4.236 21 C -0.113 4.113 22 N -0.065 5.065 23 N -0.183 5.183 24 C -0.033 4.033 25 C 0.069 3.931 26 N -0.214 5.214 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.128 0.872 30 H 0.191 0.809 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.286 0.714 35 H 0.201 0.799 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.993 -17.831 2.076 23.389 hybrid contribution 1.156 1.841 0.353 2.203 sum -13.837 -15.989 2.428 21.284 Atomic orbital electron populations 1.21029 0.83487 1.06020 1.05380 1.21917 0.98878 0.85072 0.88136 1.22341 0.91349 1.01887 1.06305 1.20060 0.94981 0.91252 0.94761 1.18545 0.85005 0.84329 0.81981 1.90664 1.35917 1.79804 1.40212 1.43059 1.40545 1.13383 1.18876 1.18554 0.96070 0.82809 1.49855 0.93906 1.26363 1.05369 0.93596 0.93624 1.69808 1.39938 1.04177 1.39445 0.86205 0.77237 0.79960 0.81993 1.14415 1.20221 1.15337 1.22182 0.93504 1.02562 0.86557 1.24270 0.85851 0.76336 0.83105 1.90725 1.19065 1.53195 1.79554 1.84462 1.47150 1.70276 1.29577 1.19481 0.95191 0.94094 1.14796 1.23776 0.96953 0.92383 0.98208 1.76825 0.99872 1.10026 1.19793 1.48680 1.00226 1.06579 1.62766 1.22171 1.03603 0.72822 1.04676 1.19063 0.89502 0.86974 0.97534 1.66469 1.04856 1.30656 1.19396 0.87855 0.88807 0.87154 0.80914 0.90404 0.85625 0.83081 0.71360 0.79900 0.89596 0.87864 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.14 71.24 0.72 -0.50 16 2 C 0.21 4.93 6.77 42.70 0.29 5.21 16 3 C -0.20 -5.60 7.36 22.65 0.17 -5.44 16 4 C 0.00 0.14 5.01 -19.73 -0.10 0.04 16 5 C 0.51 25.06 6.85 86.73 0.59 25.66 16 6 O -0.58 -33.78 16.96 -4.06 -0.07 -33.85 16 7 N -0.44 -21.25 1.71 -643.10 -1.10 -22.35 16 8 C -0.35 -20.04 9.37 84.15 0.79 -19.25 16 9 H 0.04 2.98 7.89 -2.91 -0.02 2.96 16 10 C 0.01 0.78 5.28 84.99 0.45 1.23 16 11 N -0.90 -51.36 13.95 21.69 0.30 -51.06 16 12 Si 0.93 35.39 25.24 68.60 1.73 37.13 16 13 H -0.22 -6.83 6.41 99.48 0.64 -6.19 16 14 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 15 H -0.23 -7.90 7.11 99.48 0.71 -7.20 16 16 C 0.08 2.83 4.34 85.63 0.37 3.21 16 17 C 0.46 17.36 8.32 71.24 0.59 17.95 16 18 O -0.54 -25.04 17.04 21.95 0.37 -24.67 16 19 O -0.50 -13.19 13.42 -51.42 -0.69 -13.88 16 20 C -0.22 -8.73 6.04 -21.16 -0.13 -8.85 16 21 C 0.08 3.21 11.90 85.62 1.02 4.23 16 22 N -0.25 -8.78 12.45 -56.52 -0.70 -9.49 16 23 N -0.39 -11.76 4.07 -366.51 -1.49 -13.25 16 24 C 0.11 1.93 11.48 127.77 1.47 3.40 16 25 C 0.31 10.18 8.00 134.10 1.07 11.25 16 26 N -0.50 -13.73 10.25 -181.14 -1.86 -15.59 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.11 0.80 8.07 -2.39 -0.02 0.78 16 30 H 0.17 3.96 7.23 -2.91 -0.02 3.94 16 31 H 0.29 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.13 4.54 3.45 -2.38 -0.01 4.53 16 33 H 0.15 4.32 4.46 -2.39 -0.01 4.31 16 34 H 0.42 7.46 9.10 -74.06 -0.67 6.79 16 35 H 0.18 7.48 8.06 -2.91 -0.02 7.45 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -85.34 333.86 4.21 -81.13 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.40 Total: 27.74 kcal Atomic # 6 Polarization: 30.83 SS G_CDS: 7.31 Total: 38.14 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.85 Total: -111.74 kcal Atomic # 8 Polarization: -72.01 SS G_CDS: -0.38 Total: -72.40 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 1.73 Total: 37.13 kcal Total: -85.34 4.21 -81.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.708 kcal (2) G-P(sol) polarization free energy of solvation -85.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds