Wall clock time and date at job start Tue Mar 31 2020 12:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39749 * 125.83791 * 2 1 4 4 C 1.36131 * 107.82397 * 180.16198 * 3 2 1 5 5 N 1.39409 * 126.21915 * 179.84740 * 4 3 2 6 6 C 1.34766 * 120.00119 * 359.69072 * 5 4 3 7 7 O 1.21627 * 120.00196 * 0.02562 * 6 5 4 8 8 C 1.47368 * 120.00098 * 180.02562 * 6 5 4 9 9 C 1.38258 * 126.45786 * 359.97438 * 8 6 5 10 10 N 1.34251 * 108.41060 * 180.02562 * 9 8 6 11 11 H 0.96998 * 125.39153 * 180.02562 * 10 9 8 12 12 C 1.37824 * 109.20806 * 359.73528 * 10 9 8 13 13 C 1.46638 * 125.85761 * 180.30094 * 12 10 9 14 14 O 1.21595 * 120.00132 * 180.15477 * 13 12 10 15 15 O 1.34870 * 119.99730 * 0.15759 * 13 12 10 16 16 C 1.36442 * 108.29036 * 0.43994 * 12 10 9 17 17 N 1.35270 * 107.56554 * 359.58443 * 4 3 2 18 18 C 1.46500 * 126.05250 * 180.24000 * 17 4 3 19 19 C 1.50698 * 109.47012 * 89.99969 * 18 17 4 20 20 H 1.08003 * 119.99912 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00123 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00122 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99758 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47062 * 90.00001 * 23 21 19 25 25 H 1.48504 * 109.47204 * 210.00212 * 23 21 19 26 26 H 1.48501 * 109.46926 * 329.99777 * 23 21 19 27 27 N 1.30850 * 125.83044 * 179.69547 * 2 1 3 28 28 H 1.08997 * 109.47176 * 270.27961 * 1 2 3 29 29 H 1.09005 * 109.46643 * 30.27937 * 1 2 3 30 30 H 1.08993 * 109.47362 * 150.27470 * 1 2 3 31 31 H 1.07995 * 126.09234 * 0.04195 * 3 2 1 32 32 H 0.97004 * 119.99850 * 179.68885 * 5 4 3 33 33 H 1.08002 * 125.79404 * 359.97438 * 9 8 6 34 34 H 0.96701 * 117.00059 * 179.97438 * 15 13 12 35 35 H 1.08002 * 126.50262 * 179.84184 * 16 12 10 36 36 H 1.08996 * 109.47277 * 210.00564 * 18 17 4 37 37 H 1.09005 * 109.46695 * 330.00235 * 18 17 4 38 38 H 0.96996 * 119.99848 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6198 0.7119 -0.0037 5 7 4.7510 1.5268 -0.0079 6 6 4.6156 2.8676 -0.0150 7 8 3.5065 3.3669 -0.0172 8 6 5.8113 3.7289 -0.0200 9 6 7.1279 3.3069 -0.0178 10 7 7.9205 4.3904 -0.0235 11 1 8.8904 4.3770 -0.0238 12 6 7.1378 5.5247 -0.0354 13 6 7.6282 6.9066 -0.0509 14 8 6.8391 7.8317 -0.0577 15 8 8.9544 7.1514 -0.0576 16 6 5.8283 5.1415 -0.0273 17 7 3.6093 -0.6407 0.0035 18 6 4.7869 -1.5121 0.0077 19 6 5.1912 -1.8034 1.4299 20 1 4.6270 -1.3819 2.2488 21 6 6.2813 -2.6079 1.6858 22 7 6.6338 -2.8625 2.9269 23 14 7.2574 -3.3363 0.2694 24 1 8.3483 -2.4034 -0.1113 25 1 7.8411 -4.6363 0.6873 26 1 6.3588 -3.5482 -0.8937 27 7 2.2730 -1.0609 0.0056 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3634 -0.8924 -0.5095 31 1 1.9903 2.1596 0.0006 32 1 5.6355 1.1286 -0.0057 33 1 7.4620 2.2798 -0.0116 34 1 9.2297 8.0784 -0.0681 35 1 4.9678 5.7942 -0.0307 36 1 4.5495 -2.4463 -0.5012 37 1 5.6082 -1.0154 -0.5091 38 1 7.4004 -3.4288 3.1069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600273336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:54 Heat of formation + Delta-G solvation = 1.480704 kcal Electronic energy + Delta-G solvation = -25480.375447 eV Core-core repulsion = 21518.720586 eV Total energy + Delta-G solvation = -3961.654861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96960 -40.81197 -40.00046 -38.77041 -36.49391 -34.77369 -33.76371 -32.19979 -31.79969 -30.37878 -29.45787 -28.18676 -26.31773 -24.63478 -23.57883 -22.44951 -21.05062 -20.52880 -19.95718 -19.46006 -18.56966 -18.07899 -17.22676 -16.74406 -16.34728 -16.21326 -15.71207 -15.25587 -14.89774 -14.57007 -14.21184 -14.02356 -13.79363 -13.71778 -13.65713 -13.12111 -12.77240 -12.67325 -12.60584 -12.33056 -12.01407 -11.89910 -11.81072 -11.20874 -11.17077 -10.87826 -10.49161 -10.24216 -10.01428 -9.78683 -9.55735 -9.51349 -8.90408 -8.86776 -7.94400 -7.45310 -6.36828 -4.41186 0.83416 1.45717 2.40171 2.54504 2.61243 2.74627 2.92078 3.00579 3.13423 3.14653 3.37182 3.72245 3.72857 4.09945 4.52141 4.60206 4.67541 4.89279 4.96520 5.31481 5.39329 5.55410 5.64754 5.99416 6.02053 6.04790 6.05941 6.16438 6.25647 6.26892 6.33298 6.37991 6.68447 6.75785 6.81193 7.17268 7.45438 7.46782 7.57094 7.79980 8.17794 8.34149 8.58258 8.70940 9.17705 10.75368 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.010845 B = 0.003858 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.239479 B = 7255.285704 C = 9462.170265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.291 4.291 4 C 0.307 3.693 5 N -0.638 5.638 6 C 0.597 3.403 7 O -0.512 6.512 8 C -0.228 4.228 9 C 0.094 3.906 10 N -0.513 5.513 11 H 0.430 0.570 12 C -0.057 4.057 13 C 0.557 3.443 14 O -0.502 6.502 15 O -0.522 6.522 16 C -0.024 4.024 17 N -0.345 5.345 18 C 0.230 3.770 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.871 3.129 24 H -0.272 1.272 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.283 5.283 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.164 0.836 32 H 0.411 0.589 33 H 0.191 0.809 34 H 0.419 0.581 35 H 0.166 0.834 36 H 0.055 0.945 37 H 0.034 0.966 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 15.238 -8.022 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.323 4.323 4 C 0.085 3.915 5 N -0.284 5.284 6 C 0.385 3.615 7 O -0.387 6.387 8 C -0.237 4.237 9 C -0.050 4.050 10 N -0.107 5.107 11 H 0.269 0.731 12 C -0.165 4.165 13 C 0.401 3.599 14 O -0.390 6.390 15 O -0.335 6.335 16 C -0.049 4.049 17 N -0.130 5.130 18 C 0.111 3.889 19 C -0.583 4.583 20 H 0.100 0.900 21 C -0.125 4.125 22 N -0.519 5.519 23 Si 0.697 3.303 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.187 1.187 27 N -0.108 5.108 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.182 0.818 32 H 0.248 0.752 33 H 0.207 0.793 34 H 0.278 0.722 35 H 0.183 0.817 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.047 14.107 -7.891 16.933 hybrid contribution 2.077 0.558 -0.420 2.191 sum 7.123 14.665 -8.311 18.300 Atomic orbital electron populations 1.20037 0.87426 1.02376 1.02329 1.22056 0.96582 0.90985 1.01356 1.21311 0.88964 1.00593 1.21412 1.17847 0.88060 0.82989 1.02565 1.42537 1.07954 1.05439 1.72495 1.17116 0.88186 0.80181 0.76057 1.90729 1.25817 1.73720 1.48388 1.19432 0.91703 0.93866 1.18737 1.22762 0.89914 0.92824 0.99459 1.41719 1.09966 1.04978 1.54018 0.73055 1.18830 0.90801 0.83958 1.22950 1.19416 0.80050 0.87816 0.72615 1.90987 1.56799 1.44567 1.46647 1.84547 1.25505 1.37081 1.86336 1.21126 0.94588 0.93577 0.95632 1.48872 1.06190 1.01955 1.56032 1.19913 0.79317 0.90072 0.99599 1.21221 1.14135 1.32573 0.90387 0.89989 1.24825 0.96682 0.95234 0.95725 1.69875 1.26812 1.36718 1.18530 0.86936 0.80687 0.79794 0.82909 1.19780 1.20375 1.18706 1.77363 0.85743 1.21740 1.25991 0.91144 0.91022 0.91542 0.81829 0.75248 0.79259 0.72170 0.81691 0.92746 0.94856 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 2 C 0.06 1.10 7.21 -82.44 -0.59 0.50 16 3 C -0.29 -5.90 9.58 -39.77 -0.38 -6.28 16 4 C 0.31 6.30 7.66 -153.21 -1.17 5.13 16 5 N -0.64 -10.66 5.40 -12.46 -0.07 -10.72 16 6 C 0.60 9.49 7.78 -12.55 -0.10 9.39 16 7 O -0.51 -9.55 14.04 5.25 0.07 -9.48 16 8 C -0.23 -2.79 6.13 -105.02 -0.64 -3.44 16 9 C 0.09 0.83 11.43 -16.49 -0.19 0.64 16 10 N -0.51 -3.81 6.01 -9.31 -0.06 -3.86 16 11 H 0.43 1.89 8.96 -40.82 -0.37 1.53 16 12 C -0.06 -0.57 7.02 -82.43 -0.58 -1.15 16 13 C 0.56 5.34 8.31 34.12 0.28 5.63 16 14 O -0.50 -6.37 17.65 -19.34 -0.34 -6.71 16 15 O -0.52 -3.11 13.44 -40.96 -0.55 -3.66 16 16 C -0.02 -0.28 10.37 -39.08 -0.41 -0.69 16 17 N -0.35 -7.78 3.60 -61.58 -0.22 -8.00 16 18 C 0.23 5.23 5.07 -5.19 -0.03 5.20 16 19 C -0.54 -14.48 9.94 -34.44 -0.34 -14.82 16 20 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 21 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 22 N -0.88 -25.03 13.96 55.43 0.77 -24.25 16 23 Si 0.87 18.75 27.47 -169.99 -4.67 14.08 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 27 N -0.28 -6.45 12.56 33.65 0.42 -6.03 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.16 3.24 5.82 -52.49 -0.31 2.94 16 32 H 0.41 5.90 6.87 -40.82 -0.28 5.62 16 33 H 0.19 1.15 7.44 -52.49 -0.39 0.76 16 34 H 0.42 0.70 9.11 45.56 0.42 1.12 16 35 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 37 H 0.03 0.66 6.93 -51.93 -0.36 0.30 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -36.41 342.49 -6.29 -42.70 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -2.94 Total: 9.20 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.87 Total: 1.58 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.85 Total: -52.87 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.82 Total: -19.85 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.67 Total: 14.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.41 -6.29 -42.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600273336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.179 kcal (2) G-P(sol) polarization free energy of solvation -36.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds