Wall clock time and date at job start Tue Mar 31 2020 12:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40115 * 125.97449 * 180.16635 * 4 3 2 6 6 C 1.34774 * 119.99676 * 0.32130 * 5 4 3 7 7 O 1.21623 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.47382 * 119.99531 * 179.97438 * 6 5 4 9 9 C 1.38250 * 126.45737 * 359.68789 * 8 6 5 10 10 N 1.34251 * 108.41254 * 179.88968 * 9 8 6 11 11 H 0.96996 * 125.39762 * 180.14272 * 10 9 8 12 12 C 1.37829 * 109.20641 * 0.38138 * 10 9 8 13 13 C 1.46627 * 125.85439 * 179.78474 * 12 10 9 14 14 O 1.21603 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.34874 * 120.00529 * 359.97438 * 13 12 10 16 16 C 1.36440 * 108.28224 * 359.76245 * 12 10 9 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97409 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47191 * 90.00452 * 19 18 2 21 21 H 1.07999 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00460 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99682 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00241 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46853 * 89.99972 * 24 22 20 26 26 H 1.48503 * 109.47056 * 209.99510 * 24 22 20 27 27 H 1.48498 * 109.47407 * 329.99784 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.07996 * 126.06827 * 359.97438 * 3 2 1 32 32 H 0.96996 * 119.99535 * 180.32094 * 5 4 3 33 33 H 1.08001 * 125.79355 * 0.03455 * 9 8 6 34 34 H 0.96700 * 117.00452 * 180.02562 * 15 13 12 35 35 H 1.08004 * 126.49503 * 180.02562 * 16 12 10 36 36 H 1.08997 * 109.46979 * 209.99623 * 19 18 2 37 37 H 1.08997 * 109.47491 * 329.99795 * 19 18 2 38 38 H 0.96998 * 120.00062 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7732 1.4746 0.0080 6 6 4.6364 2.8153 0.0157 7 8 3.5268 3.3134 0.0193 8 6 5.8314 3.6779 0.0210 9 6 7.1483 3.2571 0.0248 10 7 7.9399 4.3414 0.0266 11 1 8.9098 4.3289 0.0273 12 6 7.1561 5.4750 0.0325 13 6 7.6452 6.8573 0.0405 14 8 6.8552 7.7818 0.0448 15 8 8.9713 7.1035 0.0431 16 6 5.8471 5.0903 0.0292 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6946 -2.9551 -1.4362 21 1 1.9104 -2.2832 -2.2537 22 6 1.2761 -4.2432 -1.6947 23 7 1.0128 -5.0613 -0.6992 24 14 1.0829 -4.8262 -3.4588 25 1 2.3635 -5.4128 -3.9292 26 1 0.0133 -5.8541 -3.5261 27 1 0.7184 -3.6752 -4.3235 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0004 32 1 5.6581 1.0773 0.0055 33 1 7.4834 2.2304 0.0240 34 1 9.2457 8.0308 0.0488 35 1 4.9859 5.7422 0.0319 36 1 2.5847 -3.1072 0.4973 37 1 0.8915 -2.5585 0.5009 38 1 0.7180 -5.9673 -0.8810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600273570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:57 Heat of formation + Delta-G solvation = -3.043772 kcal Electronic energy + Delta-G solvation = -24814.477924 eV Core-core repulsion = 20852.626867 eV Total energy + Delta-G solvation = -3961.851057 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04768 -40.63942 -40.07545 -38.84001 -36.57211 -34.81200 -33.39204 -31.98776 -31.37487 -30.85694 -30.12950 -26.75782 -26.31629 -24.76535 -23.77201 -22.68557 -21.07553 -20.56463 -19.85176 -19.58407 -18.53926 -18.15906 -16.70007 -16.44669 -16.29469 -16.09292 -15.81773 -15.27372 -15.19046 -14.47127 -14.30574 -14.08574 -13.87114 -13.81972 -13.68355 -12.97348 -12.78134 -12.46768 -12.29761 -12.13458 -12.08841 -11.66338 -11.39706 -11.28427 -11.07512 -10.83892 -10.43356 -10.24114 -9.95115 -9.61239 -9.59871 -9.51136 -8.95706 -8.64347 -7.91218 -7.42448 -6.25393 -4.33035 0.74065 1.41330 2.31012 2.53816 2.55950 2.75830 2.91003 3.21691 3.23334 3.28039 3.33272 3.86679 3.92213 4.30606 4.41123 4.50467 4.59839 4.90530 5.08152 5.29844 5.47162 5.52675 5.74068 5.92455 5.96493 5.99494 6.12870 6.18364 6.28395 6.50373 6.59845 6.69824 6.78507 6.95357 7.06158 7.37368 7.47292 7.67082 7.70466 7.89369 8.07067 8.32427 8.66573 8.75986 9.33342 10.81749 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.002268 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.971725 B =12341.021980 C =12791.875948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.265 3.735 5 N -0.628 5.628 6 C 0.594 3.406 7 O -0.514 6.514 8 C -0.225 4.225 9 C 0.089 3.911 10 N -0.514 5.514 11 H 0.429 0.571 12 C -0.056 4.056 13 C 0.556 3.444 14 O -0.501 6.501 15 O -0.522 6.522 16 C -0.025 4.025 17 N -0.322 5.322 18 N -0.317 5.317 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.407 0.593 33 H 0.189 0.811 34 H 0.419 0.581 35 H 0.165 0.835 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.125 18.772 2.839 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.013 3.987 5 N -0.275 5.275 6 C 0.381 3.619 7 O -0.388 6.388 8 C -0.235 4.235 9 C -0.054 4.054 10 N -0.108 5.108 11 H 0.269 0.731 12 C -0.165 4.165 13 C 0.400 3.600 14 O -0.389 6.389 15 O -0.336 6.336 16 C -0.050 4.050 17 N -0.153 5.153 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.196 1.196 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.242 0.758 33 H 0.206 0.794 34 H 0.279 0.721 35 H 0.183 0.817 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.769 17.717 2.884 23.245 hybrid contribution 0.726 0.477 -0.944 1.283 sum 15.495 18.194 1.940 23.977 Atomic orbital electron populations 1.20381 0.87927 1.03879 1.02534 1.21069 0.94927 0.87134 1.00859 1.21274 0.89728 0.99865 1.21094 1.18930 0.87152 0.89532 1.03101 1.42229 1.07370 1.04837 1.73061 1.17173 0.88062 0.80408 0.76252 1.90744 1.25798 1.73872 1.48381 1.19520 0.91833 0.93910 1.18220 1.22687 0.89908 0.92653 1.00177 1.41713 1.09901 1.05013 1.54197 0.73142 1.18834 0.90801 0.83942 1.22876 1.19428 0.80058 0.87844 0.72681 1.90998 1.56723 1.44627 1.46506 1.84539 1.25545 1.37098 1.86368 1.21156 0.94606 0.93719 0.95561 1.77235 1.00010 1.08447 1.29565 1.48977 1.00949 1.07765 1.52273 1.19679 0.95982 0.71361 0.98891 1.21332 1.46730 0.97960 0.91398 0.91730 1.24933 0.94699 0.96071 0.98121 1.69922 1.44940 1.06973 1.31132 0.86357 0.77990 0.78567 0.83783 1.20370 1.20893 1.19640 0.91080 0.89935 0.90579 0.82236 0.75838 0.79386 0.72133 0.81701 0.93026 0.92786 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.94 9.52 -39.83 -0.38 -6.32 16 4 C 0.27 5.31 8.11 -154.42 -1.25 4.06 16 5 N -0.63 -9.37 5.44 -12.11 -0.07 -9.44 16 6 C 0.59 8.69 7.78 -12.54 -0.10 8.59 16 7 O -0.51 -9.33 14.04 5.26 0.07 -9.26 16 8 C -0.22 -2.39 6.13 -105.03 -0.64 -3.03 16 9 C 0.09 0.57 11.43 -16.49 -0.19 0.38 16 10 N -0.51 -2.84 6.01 -9.32 -0.06 -2.90 16 11 H 0.43 1.04 8.96 -40.82 -0.37 0.67 16 12 C -0.06 -0.48 7.02 -82.43 -0.58 -1.06 16 13 C 0.56 4.74 8.31 34.12 0.28 5.02 16 14 O -0.50 -5.93 17.65 -19.34 -0.34 -6.27 16 15 O -0.52 -2.53 13.44 -40.97 -0.55 -3.09 16 16 C -0.02 -0.27 10.37 -39.08 -0.41 -0.67 16 17 N -0.32 -7.29 12.59 31.43 0.40 -6.90 16 18 N -0.32 -7.47 3.59 -58.33 -0.21 -7.68 16 19 C 0.26 6.58 5.81 -5.20 -0.03 6.55 16 20 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 24 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.16 3.22 5.91 -52.49 -0.31 2.91 16 32 H 0.41 4.52 7.73 -40.82 -0.32 4.20 16 33 H 0.19 0.52 7.44 -52.49 -0.39 0.13 16 34 H 0.42 0.31 9.11 45.56 0.42 0.72 16 35 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -36.63 346.16 -6.75 -43.38 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.00 Total: 4.72 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.93 Total: 0.40 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.80 Total: -51.06 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.82 Total: -18.61 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.63 -6.75 -43.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600273570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.334 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds