Wall clock time and date at job start Tue Mar 31 2020 12:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40115 * 125.97449 * 180.16635 * 4 3 2 6 6 C 1.34774 * 119.99676 * 0.32130 * 5 4 3 7 7 O 1.21623 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.47382 * 119.99531 * 179.97438 * 6 5 4 9 9 C 1.38250 * 126.45737 * 359.68789 * 8 6 5 10 10 N 1.34251 * 108.41254 * 179.88968 * 9 8 6 11 11 H 0.96996 * 125.39762 * 180.14272 * 10 9 8 12 12 C 1.37829 * 109.20641 * 0.38138 * 10 9 8 13 13 C 1.46627 * 125.85439 * 179.78474 * 12 10 9 14 14 O 1.21603 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.34874 * 120.00529 * 359.97438 * 13 12 10 16 16 C 1.36440 * 108.28224 * 359.76245 * 12 10 9 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97409 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47191 * 90.00452 * 19 18 2 21 21 H 1.07999 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00460 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99682 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00241 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46853 * 89.99972 * 24 22 20 26 26 H 1.48503 * 109.47056 * 209.99510 * 24 22 20 27 27 H 1.48498 * 109.47407 * 329.99784 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.07996 * 126.06827 * 359.97438 * 3 2 1 32 32 H 0.96996 * 119.99535 * 180.32094 * 5 4 3 33 33 H 1.08001 * 125.79355 * 0.03455 * 9 8 6 34 34 H 0.96700 * 117.00452 * 180.02562 * 15 13 12 35 35 H 1.08004 * 126.49503 * 180.02562 * 16 12 10 36 36 H 1.08997 * 109.46979 * 209.99623 * 19 18 2 37 37 H 1.08997 * 109.47491 * 329.99795 * 19 18 2 38 38 H 0.96998 * 120.00062 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7732 1.4746 0.0080 6 6 4.6364 2.8153 0.0157 7 8 3.5268 3.3134 0.0193 8 6 5.8314 3.6779 0.0210 9 6 7.1483 3.2571 0.0248 10 7 7.9399 4.3414 0.0266 11 1 8.9098 4.3289 0.0273 12 6 7.1561 5.4750 0.0325 13 6 7.6452 6.8573 0.0405 14 8 6.8552 7.7818 0.0448 15 8 8.9713 7.1035 0.0431 16 6 5.8471 5.0903 0.0292 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6946 -2.9551 -1.4362 21 1 1.9104 -2.2832 -2.2537 22 6 1.2761 -4.2432 -1.6947 23 7 1.0128 -5.0613 -0.6992 24 14 1.0829 -4.8262 -3.4588 25 1 2.3635 -5.4128 -3.9292 26 1 0.0133 -5.8541 -3.5261 27 1 0.7184 -3.6752 -4.3235 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0004 32 1 5.6581 1.0773 0.0055 33 1 7.4834 2.2304 0.0240 34 1 9.2457 8.0308 0.0488 35 1 4.9859 5.7422 0.0319 36 1 2.5847 -3.1072 0.4973 37 1 0.8915 -2.5585 0.5009 38 1 0.7180 -5.9673 -0.8810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600273570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:56 Heat of formation + Delta-G solvation = -30.427379 kcal Electronic energy + Delta-G solvation = -24815.665366 eV Core-core repulsion = 20852.626867 eV Total energy + Delta-G solvation = -3963.038499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.76304 -42.16777 -40.80172 -40.04676 -37.15686 -36.29470 -35.28309 -33.22307 -32.67909 -32.32662 -30.96131 -28.58928 -27.84578 -25.85454 -24.82729 -24.19231 -22.12194 -21.38914 -21.24536 -20.58520 -19.69153 -18.77361 -18.75895 -17.67465 -17.34132 -17.03228 -16.95670 -16.48491 -16.47240 -16.10547 -15.65384 -15.17207 -14.90777 -14.74288 -14.50103 -14.35844 -14.28954 -13.79008 -13.60060 -13.55459 -13.50193 -13.12872 -12.81105 -12.68123 -12.67161 -12.23084 -12.07734 -12.00663 -11.53589 -11.31611 -10.98996 -10.71578 -10.33415 -9.66629 -9.52813 -9.07945 -8.30634 -6.48183 0.09984 0.50063 1.14293 1.37187 1.39633 1.40983 1.52637 1.74245 1.79460 1.97730 2.11700 2.33955 2.49304 2.57992 2.98881 3.61832 3.86833 3.97797 4.01931 4.18886 4.22079 4.50047 4.65516 4.75869 4.78763 4.86114 4.90626 5.02781 5.04397 5.17240 5.22104 5.32676 5.42921 5.52647 5.56005 5.83526 5.97855 6.27667 6.28791 6.37565 6.64768 6.87488 7.04529 7.19242 7.22706 8.75065 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.002268 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.971725 B =12341.021980 C =12791.875948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.301 4.301 4 C 0.276 3.724 5 N -0.617 5.617 6 C 0.596 3.404 7 O -0.556 6.556 8 C -0.257 4.257 9 C 0.132 3.868 10 N -0.489 5.489 11 H 0.449 0.551 12 C -0.059 4.059 13 C 0.564 3.436 14 O -0.542 6.542 15 O -0.505 6.505 16 C -0.046 4.046 17 N -0.354 5.354 18 N -0.343 5.343 19 C 0.276 3.724 20 C -0.552 4.552 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.970 3.030 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.271 1.271 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.426 0.574 33 H 0.234 0.766 34 H 0.439 0.561 35 H 0.145 0.855 36 H 0.026 0.974 37 H 0.051 0.949 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.306 19.132 2.165 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.332 4.332 4 C 0.022 3.978 5 N -0.266 5.266 6 C 0.386 3.614 7 O -0.433 6.433 8 C -0.266 4.266 9 C -0.015 4.015 10 N -0.085 5.085 11 H 0.293 0.707 12 C -0.167 4.167 13 C 0.409 3.591 14 O -0.433 6.433 15 O -0.320 6.320 16 C -0.072 4.072 17 N -0.184 5.184 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.590 4.590 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.195 1.195 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.181 0.819 32 H 0.264 0.736 33 H 0.251 0.749 34 H 0.302 0.698 35 H 0.163 0.837 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.045 18.111 2.220 24.970 hybrid contribution 0.187 0.504 -0.685 0.871 sum 17.232 18.615 1.534 25.413 Atomic orbital electron populations 1.20497 0.85527 1.04315 1.04071 1.21716 0.96615 0.86511 0.99516 1.21449 0.90273 0.99836 1.21609 1.19250 0.88714 0.89184 1.00664 1.42268 1.06901 1.04587 1.72830 1.17759 0.88832 0.80140 0.74630 1.90710 1.27870 1.74437 1.50322 1.19146 0.92098 0.93162 1.22235 1.23206 0.88053 0.94345 0.95850 1.41686 1.10783 1.03775 1.52240 0.70719 1.18687 0.90419 0.84940 1.22695 1.19363 0.80737 0.87292 0.71666 1.90990 1.58012 1.45769 1.48529 1.84489 1.23129 1.39023 1.85400 1.21099 0.95332 0.93937 0.96827 1.77157 0.99911 1.09720 1.31624 1.48776 1.01811 1.07439 1.54536 1.19237 0.94936 0.72425 0.97730 1.21440 1.47434 0.98321 0.91803 0.93241 1.25724 0.94003 0.95936 1.02182 1.70002 1.45122 1.07407 1.33068 0.85366 0.78276 0.78146 0.78765 1.19880 1.19640 1.19522 0.88916 0.91396 0.88108 0.81868 0.73569 0.74946 0.69805 0.83685 0.95558 0.93139 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.89 71.24 0.70 -2.23 16 2 C 0.09 3.70 6.92 41.38 0.29 3.98 16 3 C -0.30 -12.51 9.52 22.11 0.21 -12.30 16 4 C 0.28 11.07 8.11 133.34 1.08 12.15 16 5 N -0.62 -17.76 5.44 -310.49 -1.69 -19.45 16 6 C 0.60 17.18 7.78 86.65 0.67 17.85 16 7 O -0.56 -20.65 14.04 -4.10 -0.06 -20.71 16 8 C -0.26 -5.10 6.13 -20.13 -0.12 -5.22 16 9 C 0.13 1.17 11.43 84.33 0.96 2.14 16 10 N -0.49 -3.56 6.01 -183.39 -1.10 -4.66 16 11 H 0.45 0.02 8.96 -92.71 -0.83 -0.81 16 12 C -0.06 -0.90 7.02 39.97 0.28 -0.62 16 13 C 0.56 8.75 8.31 70.01 0.58 9.34 16 14 O -0.54 -12.76 17.65 19.50 0.34 -12.42 16 15 O -0.51 -3.45 13.44 -57.88 -0.78 -4.23 16 16 C -0.05 -0.98 10.37 22.59 0.23 -0.75 16 17 N -0.35 -16.24 12.59 -54.46 -0.69 -16.93 16 18 N -0.34 -16.55 3.59 -338.47 -1.22 -17.77 16 19 C 0.28 14.49 5.81 85.63 0.50 14.99 16 20 C -0.55 -30.76 9.39 25.60 0.24 -30.52 16 21 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.22 5.46 84.65 0.46 1.69 16 23 N -0.92 -51.53 13.29 21.45 0.28 -51.24 16 24 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.07 2.51 7.71 -2.39 -0.02 2.50 16 30 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.16 6.68 5.91 -2.91 -0.02 6.66 16 32 H 0.43 8.50 7.73 -92.71 -0.72 7.79 16 33 H 0.23 -0.06 7.44 -2.91 -0.02 -0.08 16 34 H 0.44 -0.58 9.11 -74.06 -0.67 -1.26 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 2.64 7.65 -2.39 -0.02 2.62 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -82.75 346.16 2.17 -80.58 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -1.05 Total: 11.47 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.09 Total: 10.50 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.41 Total: -110.05 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.49 Total: -37.35 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -82.75 2.17 -80.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600273570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.154 kcal (2) G-P(sol) polarization free energy of solvation -82.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds