Wall clock time and date at job start Tue Mar 31 2020 12:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36014 * 126.29144 * 2 1 4 4 N 1.30214 * 110.17281 * 180.02562 * 3 2 1 5 5 C 1.35433 * 109.58072 * 359.97438 * 4 3 2 6 6 C 1.39934 * 133.79564 * 180.02562 * 5 4 3 7 7 C 1.36942 * 118.37100 * 179.97438 * 6 5 4 8 8 C 1.39830 * 119.59663 * 0.02562 * 7 6 5 9 9 C 1.47808 * 119.44014 * 180.02562 * 8 7 6 10 10 O 1.21598 * 119.99821 * 353.39452 * 9 8 7 11 11 N 1.34767 * 120.00047 * 173.39759 * 9 8 7 12 12 C 1.36791 * 119.99989 * 186.32323 * 11 9 8 13 13 H 1.08000 * 120.00009 * 181.59606 * 12 11 9 14 14 C 1.39098 * 119.99679 * 1.59391 * 12 11 9 15 15 N 1.31328 * 119.99790 * 84.51424 * 14 12 11 16 16 Si 1.86801 * 120.00177 * 264.51232 * 14 12 11 17 17 H 1.48502 * 109.46935 * 5.03067 * 16 14 12 18 18 H 1.48495 * 109.47069 * 125.02882 * 16 14 12 19 19 H 1.48501 * 109.47242 * 245.03440 * 16 14 12 20 20 C 1.46503 * 120.00184 * 6.31734 * 11 9 8 21 21 C 1.53000 * 109.46727 * 82.99309 * 20 11 9 22 22 C 1.50700 * 109.46543 * 180.02562 * 21 20 11 23 23 O 1.20821 * 120.00702 * 359.97438 * 22 21 20 24 24 O 1.34238 * 119.99789 * 180.02562 * 22 21 20 25 25 N 1.32725 * 121.12171 * 0.02562 * 8 7 6 26 26 C 1.31894 * 121.35741 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.46922 * 96.16386 * 1 2 3 28 28 H 1.09009 * 109.46798 * 216.16178 * 1 2 3 29 29 H 1.08999 * 109.47622 * 336.16341 * 1 2 3 30 30 H 1.07996 * 124.91207 * 0.25734 * 3 2 1 31 31 H 1.08003 * 120.81882 * 359.96161 * 6 5 4 32 32 H 1.08006 * 120.20244 * 179.97438 * 7 6 5 33 33 H 0.97002 * 119.99922 * 184.89747 * 15 14 12 34 34 H 1.08997 * 109.47356 * 202.99357 * 20 11 9 35 35 H 1.08995 * 109.47096 * 322.99502 * 20 11 9 36 36 H 1.08995 * 109.47527 * 299.99664 * 21 20 11 37 37 H 1.09003 * 109.47064 * 60.00548 * 21 20 11 38 38 H 0.96699 * 116.99757 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2701 1.0963 0.0000 4 7 3.5210 0.7348 -0.0005 5 6 3.6028 -0.6171 -0.0004 6 6 4.6695 -1.5228 -0.0003 7 6 4.3857 -2.8625 0.0005 8 6 3.0531 -3.2861 0.0006 9 6 2.7507 -4.7329 0.0019 10 8 3.6503 -5.5421 -0.1182 11 7 1.4779 -5.1551 0.1362 12 6 1.2105 -6.4902 0.2675 13 1 0.1889 -6.8308 0.3492 14 6 2.2544 -7.4090 0.2957 15 7 2.8758 -7.6624 1.4246 16 14 2.7723 -8.2827 -1.2721 17 1 2.0041 -7.7369 -2.4198 18 1 4.2238 -8.0689 -1.5014 19 1 2.5006 -9.7368 -1.1414 20 6 0.3807 -4.1843 0.1417 21 6 0.0035 -3.8329 -1.2988 22 6 -1.1246 -2.8338 -1.2931 23 8 -1.5806 -2.4433 -0.2445 24 8 -1.6238 -2.3785 -2.4530 25 7 2.0551 -2.4110 -0.0006 26 6 2.2816 -1.1117 -0.0013 27 1 -0.3633 -0.1103 -1.0217 28 1 -0.3633 -0.8298 0.6065 29 1 -0.3634 0.9400 0.4153 30 1 1.9221 2.1186 0.0040 31 1 5.6916 -1.1739 -0.0010 32 1 5.1862 -3.5875 0.0001 33 1 3.6487 -8.2485 1.4318 34 1 -0.4828 -4.6148 0.6488 35 1 0.6967 -3.2819 0.6650 36 1 0.8670 -3.4024 -1.8058 37 1 -0.3125 -4.7354 -1.8221 38 1 -2.3471 -1.7390 -2.3987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600993630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:07 Heat of formation + Delta-G solvation = 16.307410 kcal Electronic energy + Delta-G solvation = -27690.501531 eV Core-core repulsion = 23729.489605 eV Total energy + Delta-G solvation = -3961.011927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.89795 -40.12284 -39.00185 -37.08128 -36.06763 -34.66832 -34.11954 -33.02521 -31.33008 -30.42172 -29.32548 -26.91785 -25.73370 -24.59737 -23.36332 -22.37454 -20.97144 -20.58377 -19.74698 -18.03161 -17.75877 -17.31009 -16.79369 -16.48395 -15.89715 -15.74538 -15.37700 -14.89229 -14.57304 -14.36851 -13.90341 -13.83953 -13.35235 -13.15763 -12.99538 -12.83661 -12.66467 -12.36950 -12.27402 -11.92843 -11.88265 -11.44355 -11.35857 -11.17174 -10.78149 -10.66818 -10.47251 -10.36596 -10.24500 -10.08876 -9.02613 -8.62857 -8.42344 -8.23362 -7.99073 -7.67358 -7.06235 -3.55726 1.00887 1.81516 2.38496 2.63844 2.95534 3.13982 3.24686 3.45767 3.47325 3.91101 3.99161 4.44138 4.45302 4.57733 4.76478 4.80174 4.86243 5.19546 5.24115 5.37394 5.41388 5.53425 5.56860 5.63710 5.79796 5.91720 6.06476 6.09744 6.34453 6.40517 6.57832 6.59729 6.67696 6.86846 7.08116 7.21530 7.24672 7.65372 8.03777 8.05424 8.32674 8.40420 8.93465 9.19940 9.83981 10.14711 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.006037 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.343193 B = 4637.070010 C = 6167.026676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.487 5.487 3 C 0.239 3.761 4 N -0.487 5.487 5 C -0.030 4.030 6 C -0.032 4.032 7 C -0.142 4.142 8 C 0.158 3.842 9 C 0.397 3.603 10 O -0.589 6.589 11 N -0.358 5.358 12 C -0.429 4.429 13 H 0.113 0.887 14 C 0.198 3.802 15 N -0.686 5.686 16 Si 0.864 3.136 17 H -0.265 1.265 18 H -0.268 1.268 19 H -0.292 1.292 20 C 0.102 3.898 21 C -0.115 4.115 22 C 0.489 3.511 23 O -0.518 6.518 24 O -0.522 6.522 25 N -0.492 5.492 26 C 0.246 3.754 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.211 0.789 31 H 0.133 0.867 32 H 0.146 0.854 33 H 0.286 0.714 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 11.815 -3.858 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.181 5.181 3 C -0.046 4.046 4 N -0.206 5.206 5 C -0.151 4.151 6 C -0.058 4.058 7 C -0.165 4.165 8 C 0.014 3.986 9 C 0.196 3.804 10 O -0.480 6.480 11 N -0.068 5.068 12 C -0.550 4.550 13 H 0.131 0.869 14 C -0.039 4.039 15 N -0.306 5.306 16 Si 0.685 3.315 17 H -0.189 1.189 18 H -0.193 1.193 19 H -0.220 1.220 20 C -0.023 4.023 21 C -0.153 4.153 22 C 0.332 3.668 23 O -0.406 6.406 24 O -0.333 6.333 25 N -0.212 5.212 26 C 0.011 3.989 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.227 0.773 31 H 0.151 0.849 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.995 11.502 -3.405 13.410 hybrid contribution -0.243 0.100 -0.679 0.728 sum -6.238 11.602 -4.084 13.791 Atomic orbital electron populations 1.22105 0.75862 1.04937 1.03125 1.44877 1.07157 1.04716 1.61390 1.25083 0.85247 0.92720 1.01571 1.70217 1.18148 1.11369 1.20842 1.19560 0.93548 0.90846 1.11146 1.20260 0.97500 0.91021 0.97046 1.21431 0.97743 0.95200 1.02105 1.21390 0.88594 0.93464 0.95159 1.16780 0.83148 0.85144 0.95335 1.90493 1.43912 1.51602 1.62037 1.43853 1.04642 1.05812 1.52498 1.18997 0.95022 0.80326 1.60680 0.86940 1.25063 0.91152 0.92041 0.95631 1.70568 1.10558 1.19630 1.29843 0.87152 0.80235 0.76567 0.87549 1.18875 1.19330 1.21957 1.22039 0.90794 0.95709 0.93744 1.21671 0.94658 0.96689 1.02309 1.23673 0.82430 0.80111 0.80558 1.90628 1.59702 1.57386 1.32902 1.84630 1.52327 1.59483 1.36875 1.67063 1.34950 0.98632 1.20573 1.19216 0.88780 0.88407 1.02500 0.91958 0.88193 0.89886 0.77264 0.84929 0.83620 0.90204 0.91348 0.85534 0.87805 0.87928 0.74138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.39 59.85 0.62 1.55 16 2 N -0.49 -7.11 3.20 -124.97 -0.40 -7.51 16 3 C 0.24 3.16 12.48 -89.72 -1.12 2.04 16 4 N -0.49 -8.19 11.27 -11.92 -0.13 -8.33 16 5 C -0.03 -0.56 7.25 -84.56 -0.61 -1.18 16 6 C -0.03 -0.57 10.16 -39.42 -0.40 -0.97 16 7 C -0.14 -2.83 9.55 -39.46 -0.38 -3.21 16 8 C 0.16 3.47 6.58 -82.97 -0.55 2.92 16 9 C 0.40 9.94 7.49 -12.35 -0.09 9.84 16 10 O -0.59 -16.29 12.33 5.28 0.07 -16.23 16 11 N -0.36 -8.55 2.63 -115.91 -0.31 -8.85 16 12 C -0.43 -10.80 9.48 -15.02 -0.14 -10.94 16 13 H 0.11 2.70 8.02 -52.49 -0.42 2.28 16 14 C 0.20 5.06 3.00 -17.45 -0.05 5.01 16 15 N -0.69 -17.88 13.57 55.50 0.75 -17.13 16 16 Si 0.86 20.20 28.23 -169.99 -4.80 15.40 16 17 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.10 2.02 4.25 -4.04 -0.02 2.01 16 21 C -0.11 -1.95 5.56 -27.88 -0.16 -2.10 16 22 C 0.49 7.05 7.85 36.01 0.28 7.33 16 23 O -0.52 -7.99 14.23 -18.75 -0.27 -8.26 16 24 O -0.52 -5.93 13.42 -39.28 -0.53 -6.46 16 25 N -0.49 -9.79 4.61 -8.84 -0.04 -9.83 16 26 C 0.25 4.54 8.01 -155.74 -1.25 3.29 16 27 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 28 H 0.10 1.37 6.18 -51.92 -0.32 1.05 16 29 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.21 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.15 2.88 7.62 -52.48 -0.40 2.48 16 33 H 0.29 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 35 H 0.13 2.61 4.93 -59.70 -0.29 2.32 16 36 H 0.10 1.89 7.11 -51.93 -0.37 1.52 16 37 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.40 2.57 9.10 45.56 0.41 2.98 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -32.53 326.33 -7.63 -40.17 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.04 Total: 6.51 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: -3.86 Total: 15.60 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.13 Total: -51.65 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.73 Total: -30.94 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.80 Total: 15.40 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.53 -7.63 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600993630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.475 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds