Wall clock time and date at job start Tue Mar 31 2020 12:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36014 * 126.29144 * 2 1 4 4 N 1.30214 * 110.17281 * 180.02562 * 3 2 1 5 5 C 1.35433 * 109.58072 * 359.97438 * 4 3 2 6 6 C 1.39934 * 133.79564 * 180.02562 * 5 4 3 7 7 C 1.36942 * 118.37100 * 179.97438 * 6 5 4 8 8 C 1.39830 * 119.59663 * 0.02562 * 7 6 5 9 9 C 1.47808 * 119.44014 * 180.02562 * 8 7 6 10 10 O 1.21598 * 119.99821 * 353.39452 * 9 8 7 11 11 N 1.34767 * 120.00047 * 173.39759 * 9 8 7 12 12 C 1.36791 * 119.99989 * 186.32323 * 11 9 8 13 13 H 1.08000 * 120.00009 * 181.59606 * 12 11 9 14 14 C 1.39098 * 119.99679 * 1.59391 * 12 11 9 15 15 N 1.31328 * 119.99790 * 84.51424 * 14 12 11 16 16 Si 1.86801 * 120.00177 * 264.51232 * 14 12 11 17 17 H 1.48502 * 109.46935 * 5.03067 * 16 14 12 18 18 H 1.48495 * 109.47069 * 125.02882 * 16 14 12 19 19 H 1.48501 * 109.47242 * 245.03440 * 16 14 12 20 20 C 1.46503 * 120.00184 * 6.31734 * 11 9 8 21 21 C 1.53000 * 109.46727 * 82.99309 * 20 11 9 22 22 C 1.50700 * 109.46543 * 180.02562 * 21 20 11 23 23 O 1.20821 * 120.00702 * 359.97438 * 22 21 20 24 24 O 1.34238 * 119.99789 * 180.02562 * 22 21 20 25 25 N 1.32725 * 121.12171 * 0.02562 * 8 7 6 26 26 C 1.31894 * 121.35741 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.46922 * 96.16386 * 1 2 3 28 28 H 1.09009 * 109.46798 * 216.16178 * 1 2 3 29 29 H 1.08999 * 109.47622 * 336.16341 * 1 2 3 30 30 H 1.07996 * 124.91207 * 0.25734 * 3 2 1 31 31 H 1.08003 * 120.81882 * 359.96161 * 6 5 4 32 32 H 1.08006 * 120.20244 * 179.97438 * 7 6 5 33 33 H 0.97002 * 119.99922 * 184.89747 * 15 14 12 34 34 H 1.08997 * 109.47356 * 202.99357 * 20 11 9 35 35 H 1.08995 * 109.47096 * 322.99502 * 20 11 9 36 36 H 1.08995 * 109.47527 * 299.99664 * 21 20 11 37 37 H 1.09003 * 109.47064 * 60.00548 * 21 20 11 38 38 H 0.96699 * 116.99757 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2701 1.0963 0.0000 4 7 3.5210 0.7348 -0.0005 5 6 3.6028 -0.6171 -0.0004 6 6 4.6695 -1.5228 -0.0003 7 6 4.3857 -2.8625 0.0005 8 6 3.0531 -3.2861 0.0006 9 6 2.7507 -4.7329 0.0019 10 8 3.6503 -5.5421 -0.1182 11 7 1.4779 -5.1551 0.1362 12 6 1.2105 -6.4902 0.2675 13 1 0.1889 -6.8308 0.3492 14 6 2.2544 -7.4090 0.2957 15 7 2.8758 -7.6624 1.4246 16 14 2.7723 -8.2827 -1.2721 17 1 2.0041 -7.7369 -2.4198 18 1 4.2238 -8.0689 -1.5014 19 1 2.5006 -9.7368 -1.1414 20 6 0.3807 -4.1843 0.1417 21 6 0.0035 -3.8329 -1.2988 22 6 -1.1246 -2.8338 -1.2931 23 8 -1.5806 -2.4433 -0.2445 24 8 -1.6238 -2.3785 -2.4530 25 7 2.0551 -2.4110 -0.0006 26 6 2.2816 -1.1117 -0.0013 27 1 -0.3633 -0.1103 -1.0217 28 1 -0.3633 -0.8298 0.6065 29 1 -0.3634 0.9400 0.4153 30 1 1.9221 2.1186 0.0040 31 1 5.6916 -1.1739 -0.0010 32 1 5.1862 -3.5875 0.0001 33 1 3.6487 -8.2485 1.4318 34 1 -0.4828 -4.6148 0.6488 35 1 0.6967 -3.2819 0.6650 36 1 0.8670 -3.4024 -1.8058 37 1 -0.3125 -4.7354 -1.8221 38 1 -2.3471 -1.7390 -2.3987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600993630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:06 Heat of formation + Delta-G solvation = -4.594803 kcal Electronic energy + Delta-G solvation = -27691.407919 eV Core-core repulsion = 23729.489605 eV Total energy + Delta-G solvation = -3961.918315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.25910 -41.32892 -40.60930 -38.66860 -37.17889 -36.38545 -35.43743 -34.82656 -32.78466 -31.95470 -30.84692 -28.00754 -27.42425 -26.09850 -24.82357 -23.88271 -22.35740 -21.90313 -21.26722 -19.48437 -19.15872 -18.68670 -18.19721 -17.83198 -17.09592 -17.05718 -16.87551 -16.74106 -16.12741 -15.72801 -15.47324 -15.36657 -14.80764 -14.50107 -14.39349 -14.14860 -14.05831 -13.88233 -13.66369 -13.42306 -13.30234 -13.08178 -12.97669 -12.57078 -12.45600 -12.17807 -12.03964 -11.78174 -11.58279 -11.52792 -10.90566 -10.40409 -10.03484 -9.68006 -9.56055 -9.41381 -8.95932 -5.49040 -0.41673 0.28765 1.22865 1.29429 1.44233 1.51018 1.57895 1.69846 1.99054 2.18312 2.32512 2.65546 2.97073 3.11898 3.20117 3.41421 3.72680 3.94691 4.01741 4.09635 4.10907 4.21330 4.34745 4.35546 4.54833 4.64752 4.70109 4.75178 4.89447 4.93235 5.12443 5.22311 5.25017 5.31995 5.61616 5.66081 5.86593 6.06683 6.55778 6.75471 6.79686 7.05780 7.15122 7.41614 7.98833 8.28556 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.006037 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.343193 B = 4637.070010 C = 6167.026676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.484 5.484 3 C 0.284 3.716 4 N -0.520 5.520 5 C -0.024 4.024 6 C -0.025 4.025 7 C -0.150 4.150 8 C 0.136 3.864 9 C 0.390 3.610 10 O -0.624 6.624 11 N -0.369 5.369 12 C -0.493 4.493 13 H 0.109 0.891 14 C 0.189 3.811 15 N -0.719 5.719 16 Si 0.897 3.103 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.272 1.272 20 C 0.109 3.891 21 C -0.110 4.110 22 C 0.503 3.497 23 O -0.527 6.527 24 O -0.512 6.512 25 N -0.475 5.475 26 C 0.217 3.783 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.274 0.726 31 H 0.163 0.837 32 H 0.140 0.860 33 H 0.289 0.711 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 16.578 -4.726 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.177 5.177 3 C -0.001 4.001 4 N -0.240 5.240 5 C -0.144 4.144 6 C -0.052 4.052 7 C -0.174 4.174 8 C -0.009 4.009 9 C 0.188 3.812 10 O -0.517 6.517 11 N -0.079 5.079 12 C -0.612 4.612 13 H 0.127 0.873 14 C -0.045 4.045 15 N -0.340 5.340 16 Si 0.719 3.281 17 H -0.193 1.193 18 H -0.219 1.219 19 H -0.198 1.198 20 C -0.015 4.015 21 C -0.148 4.148 22 C 0.346 3.654 23 O -0.417 6.417 24 O -0.326 6.326 25 N -0.194 5.194 26 C -0.020 4.020 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.290 0.710 31 H 0.180 0.820 32 H 0.158 0.842 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.244 16.239 -4.282 18.290 hybrid contribution 0.143 -0.684 -0.441 0.826 sum -7.101 15.555 -4.724 17.740 Atomic orbital electron populations 1.22372 0.73522 1.06614 1.03847 1.45257 1.08558 1.03596 1.60272 1.26473 0.83913 0.94414 0.95298 1.70327 1.20243 1.09740 1.23693 1.19941 0.93611 0.92170 1.08714 1.20517 0.99138 0.89963 0.95538 1.21415 0.96785 0.96294 1.02901 1.21097 0.89873 0.92489 0.97445 1.17326 0.83194 0.86308 0.94357 1.90433 1.45230 1.53126 1.62866 1.43793 1.05056 1.05961 1.53126 1.18861 0.94744 0.81270 1.66275 0.87324 1.25477 0.90890 0.91889 0.96280 1.70618 1.11504 1.20907 1.30999 0.86643 0.78107 0.77192 0.86198 1.19282 1.21859 1.19798 1.21989 0.89529 0.94403 0.95533 1.21411 0.95571 0.97760 1.00091 1.22884 0.81821 0.79607 0.81101 1.90639 1.59922 1.57640 1.33456 1.84546 1.53218 1.60031 1.34808 1.66927 1.34468 0.99585 1.18413 1.19541 0.90234 0.88578 1.03658 0.90804 0.90621 0.85079 0.71037 0.81968 0.84175 0.89904 0.91852 0.86170 0.89089 0.87930 0.71085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.39 127.77 1.33 2.68 16 2 N -0.48 -11.79 3.20 -549.29 -1.76 -13.55 16 3 C 0.28 5.68 12.48 180.03 2.25 7.93 16 4 N -0.52 -15.02 11.27 -191.62 -2.16 -17.17 16 5 C -0.02 -0.82 7.25 39.70 0.29 -0.53 16 6 C -0.02 -0.85 10.16 22.38 0.23 -0.62 16 7 C -0.15 -6.05 9.55 22.35 0.21 -5.84 16 8 C 0.14 6.10 6.58 41.93 0.28 6.38 16 9 C 0.39 20.53 7.49 86.78 0.65 21.18 16 10 O -0.62 -36.41 12.33 -4.02 -0.05 -36.46 16 11 N -0.37 -18.60 2.63 -638.88 -1.68 -20.28 16 12 C -0.49 -26.48 9.48 84.13 0.80 -25.68 16 13 H 0.11 5.65 8.02 -2.91 -0.02 5.63 16 14 C 0.19 10.26 3.00 84.97 0.26 10.52 16 15 N -0.72 -39.74 13.57 21.69 0.29 -39.44 16 16 Si 0.90 43.49 28.23 68.60 1.94 45.43 16 17 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 C 0.11 4.50 4.25 86.38 0.37 4.87 16 21 C -0.11 -3.76 5.56 29.85 0.17 -3.59 16 22 C 0.50 13.64 7.85 71.24 0.56 14.20 16 23 O -0.53 -15.28 14.23 21.98 0.31 -14.97 16 24 O -0.51 -10.05 13.42 -51.49 -0.69 -10.74 16 25 N -0.48 -18.69 4.61 -181.87 -0.84 -19.53 16 26 C 0.22 7.44 8.01 134.06 1.07 8.51 16 27 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16 28 H 0.08 1.81 6.18 -2.38 -0.01 1.80 16 29 H 0.13 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.27 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.14 5.73 7.62 -2.91 -0.02 5.70 16 33 H 0.29 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.06 2.60 7.91 -2.39 -0.02 2.58 16 35 H 0.12 5.05 4.93 -17.72 -0.09 4.97 16 36 H 0.09 3.35 7.11 -2.39 -0.02 3.33 16 37 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.43 3.71 9.10 -74.06 -0.67 3.03 16 Total: -1.00 -76.02 326.33 4.20 -71.82 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.39 Total: 14.90 kcal Atomic # 6 Polarization: 31.55 SS G_CDS: 8.45 Total: 40.00 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -6.14 Total: -109.98 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -0.43 Total: -62.17 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.94 Total: 45.43 kcal Total: -76.02 4.20 -71.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600993630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.221 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds