Wall clock time and date at job start Tue Mar 31 2020 12:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39803 * 125.34205 * 2 1 4 4 C 1.30197 * 110.13719 * 180.02562 * 3 2 1 5 5 C 1.45977 * 107.58913 * 359.97438 * 4 3 2 6 6 C 1.39648 * 134.11699 * 180.35530 * 5 4 3 7 7 C 1.39572 * 117.94595 * 180.16119 * 6 5 4 8 8 C 1.47579 * 120.41540 * 179.74392 * 7 6 5 9 9 O 1.21614 * 120.00345 * 26.04075 * 8 7 6 10 10 N 1.34776 * 120.00074 * 206.03792 * 8 7 6 11 11 C 1.36911 * 119.99743 * 6.63434 * 10 8 7 12 12 H 1.07998 * 119.99922 * 40.74878 * 11 10 8 13 13 C 1.39026 * 119.99846 * 221.02089 * 11 10 8 14 14 N 1.31385 * 119.99658 * 209.29468 * 13 11 10 15 15 Si 1.86795 * 120.00221 * 29.29155 * 13 11 10 16 16 H 1.48499 * 109.46974 * 94.13432 * 15 13 11 17 17 H 1.48496 * 109.47480 * 214.13749 * 15 13 11 18 18 H 1.48496 * 109.47246 * 334.14091 * 15 13 11 19 19 C 1.46499 * 120.00186 * 186.63836 * 10 8 7 20 20 C 1.53000 * 109.46915 * 272.76285 * 19 10 8 21 21 C 1.50696 * 109.47217 * 180.02562 * 20 19 10 22 22 O 1.20823 * 120.00403 * 0.02562 * 21 20 19 23 23 O 1.34236 * 120.00275 * 179.97438 * 21 20 19 24 24 C 1.40237 * 119.16371 * 359.46706 * 7 6 5 25 25 N 1.31176 * 121.37138 * 0.25878 * 24 7 6 26 26 C 1.32940 * 121.85206 * 0.02562 * 25 24 7 27 27 H 1.09004 * 109.47166 * 269.96127 * 1 2 3 28 28 H 1.09004 * 109.47262 * 29.95739 * 1 2 3 29 29 H 1.09000 * 109.47237 * 149.95671 * 1 2 3 30 30 H 1.08007 * 126.20730 * 180.02562 * 4 3 2 31 31 H 1.08006 * 121.02572 * 359.90500 * 6 5 4 32 32 H 0.97000 * 119.99477 * 180.02562 * 14 13 11 33 33 H 1.08995 * 109.47513 * 32.76061 * 19 10 8 34 34 H 1.09001 * 109.47173 * 152.76325 * 19 10 8 35 35 H 1.09011 * 109.46998 * 299.99899 * 20 19 10 36 36 H 1.08999 * 109.47113 * 59.99491 * 20 19 10 37 37 H 0.96692 * 117.00441 * 179.97438 * 23 21 20 38 38 H 1.08003 * 119.31378 * 180.27552 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7989 -0.0005 5 6 3.5907 -0.6596 -0.0003 6 6 4.6329 -1.5892 0.0056 7 6 4.3003 -2.9447 0.0001 8 6 5.3583 -3.9736 0.0002 9 8 6.4524 -3.7207 0.4669 10 7 5.1119 -5.1935 -0.5170 11 6 3.9298 -5.4370 -1.1634 12 1 3.5132 -4.6925 -1.8256 13 6 3.2630 -6.6403 -0.9630 14 7 2.5126 -7.1424 -1.9175 15 14 3.4339 -7.5434 0.6632 16 1 2.3153 -7.1607 1.5618 17 1 3.3966 -9.0082 0.4224 18 1 4.7258 -7.1789 1.2984 19 6 6.1089 -6.2591 -0.3873 20 6 7.0955 -6.1790 -1.5539 21 6 8.1207 -7.2755 -1.4209 22 8 8.0675 -8.0426 -0.4890 23 8 9.0926 -7.4006 -2.3384 24 6 2.9481 -3.3166 0.0004 25 7 1.9927 -2.4178 0.0007 26 6 2.2554 -1.1146 0.0002 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3634 0.8904 -0.5132 29 1 -0.3634 -0.8896 -0.5145 30 1 4.3742 1.4726 -0.0003 31 1 5.6644 -1.2690 0.0099 32 1 2.0471 -7.9818 -1.7775 33 1 6.6475 -6.1404 0.5528 34 1 5.6092 -7.2277 -0.3999 35 1 6.5569 -6.2978 -2.4942 36 1 7.5952 -5.2104 -1.5414 37 1 9.7273 -8.1187 -2.2105 38 1 2.6880 -4.3648 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601033111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:13 Heat of formation + Delta-G solvation = -3.942994 kcal Electronic energy + Delta-G solvation = -26335.871430 eV Core-core repulsion = 22373.981380 eV Total energy + Delta-G solvation = -3961.890050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24160 -40.04350 -39.18603 -37.25801 -35.97549 -35.29731 -33.55788 -32.54712 -31.53655 -30.94701 -29.56462 -26.75508 -25.38293 -24.91102 -23.37443 -22.63216 -20.85263 -20.65728 -19.53144 -18.03085 -17.71756 -17.35619 -16.85807 -16.33382 -15.82257 -15.62333 -15.52088 -15.24419 -14.63127 -14.25609 -14.01187 -13.72474 -13.52078 -13.17955 -13.06446 -12.78188 -12.75056 -12.55611 -12.42746 -12.18934 -11.90272 -11.85157 -11.31773 -11.12856 -10.94952 -10.90991 -10.41544 -10.30933 -10.13278 -9.96733 -9.62109 -9.07204 -8.74483 -8.66885 -8.03490 -7.94097 -6.78165 -4.33439 1.13259 1.40286 2.34016 2.49435 2.65366 3.01575 3.15127 3.20079 3.24885 3.57926 3.97190 4.18631 4.30586 4.41132 4.57125 4.79950 4.87230 5.22532 5.28837 5.33639 5.42640 5.46041 5.52297 5.55151 5.65731 5.77390 5.88258 6.06031 6.15673 6.31702 6.43483 6.50299 6.67070 6.72332 6.82354 7.06399 7.17674 7.62304 7.79470 8.00906 8.13510 8.34322 8.68150 9.07098 9.41945 10.29226 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.004183 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.018904 B = 6692.407288 C = 7868.726237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.401 5.401 3 N -0.255 5.255 4 C 0.090 3.910 5 C -0.248 4.248 6 C 0.044 3.956 7 C -0.194 4.194 8 C 0.529 3.471 9 O -0.590 6.590 10 N -0.452 5.452 11 C -0.371 4.371 12 H 0.108 0.892 13 C 0.081 3.919 14 N -0.825 5.825 15 Si 0.847 3.153 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.248 1.248 19 C 0.129 3.871 20 C -0.126 4.126 21 C 0.485 3.515 22 O -0.521 6.521 23 O -0.520 6.520 24 C 0.221 3.779 25 N -0.519 5.519 26 C 0.320 3.680 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.198 0.802 31 H 0.143 0.857 32 H 0.281 0.719 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.403 0.597 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 6.903 0.404 7.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.192 5.192 3 N -0.067 5.067 4 C -0.109 4.109 5 C -0.258 4.258 6 C 0.015 3.985 7 C -0.201 4.201 8 C 0.319 3.681 9 O -0.475 6.475 10 N -0.171 5.171 11 C -0.496 4.496 12 H 0.125 0.875 13 C -0.132 4.132 14 N -0.456 5.456 15 Si 0.670 3.330 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.171 1.171 19 C 0.006 3.994 20 C -0.165 4.165 21 C 0.328 3.672 22 O -0.409 6.409 23 O -0.332 6.332 24 C 0.052 3.948 25 N -0.234 5.234 26 C 0.081 3.919 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.215 0.785 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.261 0.739 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.042 7.749 0.725 7.783 hybrid contribution 1.567 -1.504 0.621 2.259 sum 1.609 6.245 1.346 6.588 Atomic orbital electron populations 1.21732 0.73892 1.04149 1.02861 1.47941 1.05979 1.00237 1.65043 1.76585 1.02755 1.07899 1.19488 1.24983 0.94659 0.92877 0.98380 1.20357 0.94307 0.94294 1.16855 1.21063 0.98484 0.90401 0.88583 1.20672 0.95788 0.93649 1.09989 1.17960 0.86944 0.83436 0.79726 1.90659 1.24926 1.81132 1.50760 1.43462 1.15489 1.08876 1.49271 1.19023 0.99184 1.05252 1.26189 0.87458 1.25403 0.95011 0.95979 0.96819 1.69861 1.27370 1.18198 1.30189 0.87372 0.80588 0.79746 0.85249 1.19470 1.20159 1.17146 1.21464 0.89619 0.92016 0.96341 1.21812 0.94384 0.96181 1.04103 1.23730 0.80240 0.84773 0.78468 1.90695 1.73538 1.43944 1.32763 1.84584 1.40465 1.55575 1.52556 1.24500 0.86745 0.99889 0.83624 1.67040 1.38007 0.97883 1.20464 1.19331 0.88409 0.88621 0.95490 0.91524 0.89894 0.89164 0.78497 0.83914 0.90885 0.90445 0.90388 0.86738 0.87396 0.73888 0.77806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.34 11.43 59.84 0.68 2.03 16 2 N -0.40 -6.31 4.03 -67.17 -0.27 -6.58 16 3 N -0.26 -3.81 12.39 31.87 0.39 -3.41 16 4 C 0.09 1.21 12.30 -15.15 -0.19 1.03 16 5 C -0.25 -4.13 6.36 -105.20 -0.67 -4.79 16 6 C 0.04 0.76 9.76 -38.56 -0.38 0.38 16 7 C -0.19 -3.84 5.55 -104.84 -0.58 -4.42 16 8 C 0.53 11.38 7.42 -12.45 -0.09 11.29 16 9 O -0.59 -13.49 16.38 5.27 0.09 -13.41 16 10 N -0.45 -9.76 2.08 -115.98 -0.24 -10.00 16 11 C -0.37 -8.43 6.25 -14.99 -0.09 -8.52 16 12 H 0.11 2.61 6.94 -52.49 -0.36 2.25 16 13 C 0.08 1.88 4.83 -17.45 -0.08 1.80 16 14 N -0.83 -20.32 13.96 55.50 0.77 -19.55 16 15 Si 0.85 18.28 26.33 -169.99 -4.48 13.80 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.25 -5.38 5.71 56.52 0.32 -5.06 16 19 C 0.13 2.66 2.80 -4.04 -0.01 2.65 16 20 C -0.13 -2.21 6.12 -27.88 -0.17 -2.38 16 21 C 0.49 7.99 8.33 36.00 0.30 8.29 16 22 O -0.52 -9.99 16.74 -18.75 -0.31 -10.30 16 23 O -0.52 -6.69 13.42 -39.27 -0.53 -7.22 16 24 C 0.22 4.42 9.11 -17.08 -0.16 4.26 16 25 N -0.52 -10.10 10.37 -12.01 -0.12 -10.23 16 26 C 0.32 5.77 7.96 -156.07 -1.24 4.53 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.20 1.76 8.06 -52.48 -0.42 1.33 16 31 H 0.14 2.19 7.93 -52.48 -0.42 1.77 16 32 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 34 H 0.08 1.67 4.57 -51.93 -0.24 1.43 16 35 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 36 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 37 H 0.40 3.25 9.10 45.56 0.41 3.67 16 38 H 0.21 4.33 5.17 -52.48 -0.27 4.05 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -30.30 332.18 -5.39 -35.69 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.02 Total: 10.08 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: -2.68 Total: 16.13 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.53 Total: -49.77 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.75 Total: -30.93 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.48 Total: 13.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.30 -5.39 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601033111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.742 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds