Wall clock time and date at job start Tue Mar 31 2020 12:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39803 * 125.34205 * 2 1 4 4 C 1.30197 * 110.13719 * 180.02562 * 3 2 1 5 5 C 1.45977 * 107.58913 * 359.97438 * 4 3 2 6 6 C 1.39648 * 134.11699 * 180.35530 * 5 4 3 7 7 C 1.39572 * 117.94595 * 180.16119 * 6 5 4 8 8 C 1.47579 * 120.41540 * 179.74392 * 7 6 5 9 9 O 1.21614 * 120.00345 * 26.04075 * 8 7 6 10 10 N 1.34776 * 120.00074 * 206.03792 * 8 7 6 11 11 C 1.36911 * 119.99743 * 6.63434 * 10 8 7 12 12 H 1.07998 * 119.99922 * 40.74878 * 11 10 8 13 13 C 1.39026 * 119.99846 * 221.02089 * 11 10 8 14 14 N 1.31385 * 119.99658 * 209.29468 * 13 11 10 15 15 Si 1.86795 * 120.00221 * 29.29155 * 13 11 10 16 16 H 1.48499 * 109.46974 * 94.13432 * 15 13 11 17 17 H 1.48496 * 109.47480 * 214.13749 * 15 13 11 18 18 H 1.48496 * 109.47246 * 334.14091 * 15 13 11 19 19 C 1.46499 * 120.00186 * 186.63836 * 10 8 7 20 20 C 1.53000 * 109.46915 * 272.76285 * 19 10 8 21 21 C 1.50696 * 109.47217 * 180.02562 * 20 19 10 22 22 O 1.20823 * 120.00403 * 0.02562 * 21 20 19 23 23 O 1.34236 * 120.00275 * 179.97438 * 21 20 19 24 24 C 1.40237 * 119.16371 * 359.46706 * 7 6 5 25 25 N 1.31176 * 121.37138 * 0.25878 * 24 7 6 26 26 C 1.32940 * 121.85206 * 0.02562 * 25 24 7 27 27 H 1.09004 * 109.47166 * 269.96127 * 1 2 3 28 28 H 1.09004 * 109.47262 * 29.95739 * 1 2 3 29 29 H 1.09000 * 109.47237 * 149.95671 * 1 2 3 30 30 H 1.08007 * 126.20730 * 180.02562 * 4 3 2 31 31 H 1.08006 * 121.02572 * 359.90500 * 6 5 4 32 32 H 0.97000 * 119.99477 * 180.02562 * 14 13 11 33 33 H 1.08995 * 109.47513 * 32.76061 * 19 10 8 34 34 H 1.09001 * 109.47173 * 152.76325 * 19 10 8 35 35 H 1.09011 * 109.46998 * 299.99899 * 20 19 10 36 36 H 1.08999 * 109.47113 * 59.99491 * 20 19 10 37 37 H 0.96692 * 117.00441 * 179.97438 * 23 21 20 38 38 H 1.08003 * 119.31378 * 180.27552 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7989 -0.0005 5 6 3.5907 -0.6596 -0.0003 6 6 4.6329 -1.5892 0.0056 7 6 4.3003 -2.9447 0.0001 8 6 5.3583 -3.9736 0.0002 9 8 6.4524 -3.7207 0.4669 10 7 5.1119 -5.1935 -0.5170 11 6 3.9298 -5.4370 -1.1634 12 1 3.5132 -4.6925 -1.8256 13 6 3.2630 -6.6403 -0.9630 14 7 2.5126 -7.1424 -1.9175 15 14 3.4339 -7.5434 0.6632 16 1 2.3153 -7.1607 1.5618 17 1 3.3966 -9.0082 0.4224 18 1 4.7258 -7.1789 1.2984 19 6 6.1089 -6.2591 -0.3873 20 6 7.0955 -6.1790 -1.5539 21 6 8.1207 -7.2755 -1.4209 22 8 8.0675 -8.0426 -0.4890 23 8 9.0926 -7.4006 -2.3384 24 6 2.9481 -3.3166 0.0004 25 7 1.9927 -2.4178 0.0007 26 6 2.2554 -1.1146 0.0002 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3634 0.8904 -0.5132 29 1 -0.3634 -0.8896 -0.5145 30 1 4.3742 1.4726 -0.0003 31 1 5.6644 -1.2690 0.0099 32 1 2.0471 -7.9818 -1.7775 33 1 6.6475 -6.1404 0.5528 34 1 5.6092 -7.2277 -0.3999 35 1 6.5569 -6.2978 -2.4942 36 1 7.5952 -5.2104 -1.5414 37 1 9.7273 -8.1187 -2.2105 38 1 2.6880 -4.3648 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601033111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:13 Heat of formation + Delta-G solvation = -24.444195 kcal Electronic energy + Delta-G solvation = -26336.760429 eV Core-core repulsion = 22373.981380 eV Total energy + Delta-G solvation = -3962.779049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54298 -41.40873 -40.72173 -38.67372 -37.29593 -36.92265 -34.77501 -34.28383 -33.03001 -32.32740 -30.94940 -27.90298 -27.13051 -26.35881 -24.76650 -24.04903 -22.19338 -21.84384 -21.18632 -19.54546 -19.08934 -18.63004 -18.39677 -17.84458 -17.19208 -17.00655 -16.83233 -16.67211 -16.23933 -15.78019 -15.56017 -14.94918 -14.93762 -14.56362 -14.44454 -14.30134 -14.14459 -14.02229 -13.75825 -13.49666 -13.33100 -13.19467 -12.85971 -12.63055 -12.54751 -12.17825 -12.06738 -11.74047 -11.64941 -11.45414 -11.27621 -10.75236 -10.31279 -10.00851 -9.77708 -9.27386 -8.60964 -6.15410 -0.18720 -0.05457 1.18336 1.18559 1.26130 1.38257 1.45954 1.47760 1.86845 2.01704 2.19390 2.66090 2.71961 3.00365 3.28255 3.36043 3.67640 3.88294 3.91727 4.00235 4.05622 4.24858 4.40857 4.41903 4.47712 4.50976 4.63029 4.66357 4.70346 4.79378 4.94871 5.18926 5.27747 5.34288 5.54895 5.58824 5.82514 6.01824 6.18683 6.41602 6.88315 6.93403 6.99929 7.32248 7.68284 8.50435 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.004183 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.018904 B = 6692.407288 C = 7868.726237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.405 5.405 3 N -0.262 5.262 4 C 0.111 3.889 5 C -0.255 4.255 6 C 0.061 3.939 7 C -0.221 4.221 8 C 0.532 3.468 9 O -0.605 6.605 10 N -0.459 5.459 11 C -0.353 4.353 12 H 0.089 0.911 13 C 0.058 3.942 14 N -0.860 5.860 15 Si 0.885 3.115 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.252 1.252 19 C 0.128 3.872 20 C -0.120 4.120 21 C 0.497 3.503 22 O -0.552 6.552 23 O -0.507 6.507 24 C 0.213 3.787 25 N -0.534 5.534 26 C 0.301 3.699 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.166 0.834 32 H 0.284 0.716 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.428 0.572 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 8.921 0.411 9.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.196 5.196 3 N -0.074 5.074 4 C -0.088 4.088 5 C -0.265 4.265 6 C 0.033 3.967 7 C -0.228 4.228 8 C 0.323 3.677 9 O -0.491 6.491 10 N -0.178 5.178 11 C -0.480 4.480 12 H 0.106 0.894 13 C -0.151 4.151 14 N -0.493 5.493 15 Si 0.708 3.292 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.176 1.176 19 C 0.004 3.996 20 C -0.159 4.159 21 C 0.341 3.659 22 O -0.443 6.443 23 O -0.320 6.320 24 C 0.045 3.955 25 N -0.250 5.250 26 C 0.062 3.938 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.263 0.737 31 H 0.183 0.817 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.290 0.710 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.011 9.772 0.720 9.850 hybrid contribution 1.287 -1.939 0.604 2.404 sum 2.297 7.833 1.324 8.269 Atomic orbital electron populations 1.22002 0.72058 1.05166 1.04086 1.48342 1.07228 0.99641 1.64409 1.76620 1.03302 1.07499 1.19933 1.25748 0.95450 0.91659 0.95921 1.20658 0.93425 0.96001 1.16408 1.21264 0.99765 0.89359 0.86344 1.20559 0.95004 0.94453 1.12751 1.18202 0.87057 0.83552 0.78908 1.90633 1.25643 1.81437 1.51384 1.43500 1.15430 1.09296 1.49550 1.18745 0.99562 1.04484 1.25183 0.89369 1.25678 0.94952 0.96514 0.97989 1.69885 1.29068 1.19079 1.31314 0.86797 0.80139 0.78946 0.83323 1.19406 1.20229 1.17590 1.21395 0.89842 0.91111 0.97221 1.21620 0.94351 0.97183 1.02725 1.23323 0.80459 0.83850 0.78315 1.90695 1.74465 1.44970 1.34143 1.84506 1.40036 1.56597 1.50870 1.24085 0.87207 0.99382 0.84825 1.66924 1.38025 0.98875 1.21172 1.19638 0.89994 0.88602 0.95614 0.90188 0.87498 0.89582 0.73659 0.81680 0.90602 0.91514 0.91496 0.86411 0.86729 0.71029 0.79696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 11.43 127.77 1.46 3.78 16 2 N -0.41 -11.98 4.03 -366.42 -1.48 -13.46 16 3 N -0.26 -6.98 12.39 -53.07 -0.66 -7.64 16 4 C 0.11 2.56 12.30 86.94 1.07 3.63 16 5 C -0.25 -7.89 6.36 -20.24 -0.13 -8.02 16 6 C 0.06 2.02 9.76 22.93 0.22 2.24 16 7 C -0.22 -8.71 5.55 -20.00 -0.11 -8.82 16 8 C 0.53 22.94 7.42 86.71 0.64 23.58 16 9 O -0.60 -27.37 16.38 -4.07 -0.07 -27.44 16 10 N -0.46 -20.09 2.08 -639.09 -1.33 -21.41 16 11 C -0.35 -16.49 6.25 84.09 0.53 -15.96 16 12 H 0.09 4.46 6.94 -2.91 -0.02 4.44 16 13 C 0.06 2.78 4.83 84.95 0.41 3.19 16 14 N -0.86 -43.41 13.96 21.68 0.30 -43.11 16 15 Si 0.88 38.41 26.33 68.60 1.81 40.22 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.25 -11.04 5.71 99.48 0.57 -10.47 16 19 C 0.13 5.30 2.80 86.38 0.24 5.54 16 20 C -0.12 -4.14 6.12 29.85 0.18 -3.96 16 21 C 0.50 15.77 8.33 71.23 0.59 16.36 16 22 O -0.55 -20.80 16.74 21.97 0.37 -20.43 16 23 O -0.51 -11.82 13.42 -51.47 -0.69 -12.51 16 24 C 0.21 8.74 9.11 85.28 0.78 9.52 16 25 N -0.53 -20.98 10.37 -191.90 -1.99 -22.97 16 26 C 0.30 10.52 7.96 134.17 1.07 11.59 16 27 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.25 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.17 4.59 7.93 -2.91 -0.02 4.57 16 32 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.07 2.89 7.57 -2.39 -0.02 2.87 16 34 H 0.07 2.90 4.57 -2.39 -0.01 2.89 16 35 H 0.12 3.98 8.14 -2.38 -0.02 3.97 16 36 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.43 5.69 9.10 -74.06 -0.67 5.02 16 38 H 0.19 8.21 5.17 -2.91 -0.02 8.20 16 Total: -1.00 -65.67 332.18 3.55 -62.12 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.33 Total: 23.98 kcal Atomic # 6 Polarization: 35.71 SS G_CDS: 6.95 Total: 42.67 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -5.15 Total: -108.59 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -0.39 Total: -60.38 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.81 Total: 40.22 kcal Total: -65.67 3.55 -62.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601033111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.672 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds