Wall clock time and date at job start Tue Mar 31 2020 11:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48501 * 109.47115 * 269.99959 * 3 2 1 5 5 H 1.48500 * 109.47493 * 29.99724 * 3 2 1 6 6 H 1.48500 * 109.47421 * 150.00000 * 3 2 1 7 7 C 1.38951 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99706 * 201.63729 * 7 2 1 9 9 N 1.37096 * 119.99915 * 21.64679 * 7 2 1 10 10 C 1.46490 * 120.00423 * 16.51206 * 9 7 2 11 11 C 1.50699 * 109.46955 * 264.06840 * 10 9 7 12 12 O 1.20827 * 120.00220 * 359.97438 * 11 10 9 13 13 O 1.34237 * 120.00232 * 179.97438 * 11 10 9 14 14 C 1.34780 * 119.99328 * 196.51089 * 9 7 2 15 15 O 1.21292 * 120.00429 * 359.97438 * 14 9 7 16 16 C 1.50705 * 119.99636 * 179.97438 * 14 9 7 17 17 C 1.52995 * 109.46979 * 179.97438 * 16 14 9 18 18 C 1.50705 * 109.46979 * 179.97438 * 17 16 14 19 19 N 1.30110 * 124.95619 * 305.02364 * 18 17 16 20 20 C 1.35673 * 109.49714 * 179.97438 * 19 18 17 21 21 C 1.39829 * 133.87949 * 180.02562 * 20 19 18 22 22 C 1.38167 * 118.16273 * 179.97438 * 21 20 19 23 23 C 1.38614 * 119.55513 * 0.02562 * 22 21 20 24 24 N 1.31693 * 121.35813 * 359.97429 * 23 22 21 25 25 C 1.32346 * 121.57349 * 0.04657 * 24 23 22 26 26 N 1.36114 * 124.95895 * 124.72495 * 18 17 16 27 27 H 0.97004 * 126.27533 * 0.02562 * 26 18 17 28 28 H 0.96999 * 119.99965 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47339 * 24.06419 * 10 9 7 30 30 H 1.08998 * 109.47304 * 144.06716 * 10 9 7 31 31 H 0.96694 * 117.00088 * 179.97438 * 13 11 10 32 32 H 1.09008 * 109.47255 * 60.00051 * 16 14 9 33 33 H 1.09000 * 109.47166 * 300.00242 * 16 14 9 34 34 H 1.08994 * 109.47764 * 299.99819 * 17 16 14 35 35 H 1.08998 * 109.47291 * 60.00379 * 17 16 14 36 36 H 1.08008 * 120.91597 * 0.02562 * 21 20 19 37 37 H 1.08002 * 120.22567 * 180.02562 * 22 21 20 38 38 H 1.07994 * 119.32424 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0318 -1.2361 0.3454 9 7 1.3959 -2.3490 -0.4369 10 6 0.1674 -2.2652 -1.2304 11 6 -1.0270 -2.4245 -0.3254 12 8 -0.8683 -2.5913 0.8607 13 8 -2.2673 -2.3810 -0.8369 14 6 1.9237 -3.5523 -0.1369 15 8 2.9412 -3.6216 0.5197 16 6 1.2496 -4.8116 -0.6172 17 6 2.0465 -6.0289 -0.1441 18 6 1.3721 -7.2883 -0.6239 19 7 0.1295 -7.6010 -0.3979 20 6 -0.1476 -8.7988 -0.9719 21 6 -1.2939 -9.5961 -1.0456 22 6 -1.2135 -10.7916 -1.7336 23 6 -0.0148 -11.1621 -2.3229 24 7 1.0539 -10.3968 -2.2421 25 6 1.0323 -9.2425 -1.5953 26 7 1.9723 -8.2619 -1.3619 27 1 2.8937 -8.2662 -1.6653 28 1 -0.4850 0.8400 -0.0004 29 1 0.1205 -1.2958 -1.7265 30 1 0.1639 -3.0571 -1.9794 31 1 -3.0018 -2.4884 -0.2172 32 1 1.2057 -4.8075 -1.7064 33 1 0.2384 -4.8594 -0.2130 34 1 3.0575 -5.9811 -0.5486 35 1 2.0908 -6.0333 0.9450 36 1 -2.2168 -9.2856 -0.5783 37 1 -2.0788 -11.4332 -1.8117 38 1 0.0437 -12.0971 -2.8602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:57 Heat of formation + Delta-G solvation = -30.898047 kcal Electronic energy + Delta-G solvation = -26065.449970 eV Core-core repulsion = 22102.391061 eV Total energy + Delta-G solvation = -3963.058909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43167 -39.49774 -38.60004 -38.13152 -35.33419 -34.57584 -33.74172 -33.14028 -31.75457 -31.28547 -29.26498 -27.72391 -26.11269 -24.16673 -23.16441 -22.62454 -21.15910 -20.79374 -18.90781 -18.35675 -17.61538 -17.18506 -16.93303 -16.47441 -16.05124 -15.83097 -15.70954 -14.86339 -14.69405 -14.49419 -14.39956 -14.10838 -13.47502 -13.21379 -13.06919 -12.81279 -12.60031 -12.30228 -11.95127 -11.69478 -11.59740 -11.49381 -11.27622 -11.04305 -10.97883 -10.79456 -10.44803 -10.35946 -10.32380 -9.65451 -9.32048 -9.07453 -9.00402 -8.66593 -8.43815 -7.96482 -6.48904 -3.93336 0.67536 1.12810 2.41585 2.67838 3.11244 3.22491 3.27523 3.44685 3.60683 3.69931 3.89748 4.03732 4.22728 4.29376 4.50789 4.71149 4.81072 4.89663 5.00189 5.07323 5.26663 5.33228 5.42629 5.61498 5.71928 5.78213 5.94120 5.96309 6.05204 6.22051 6.28487 6.43491 6.50706 6.55463 7.01142 7.48768 7.52909 7.69740 7.73167 7.92440 8.31187 9.01946 9.04114 9.26179 9.77467 10.59917 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.003133 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.983761 B = 8933.757937 C = 9779.341556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.030 3.970 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.109 0.891 9 N -0.429 5.429 10 C 0.145 3.855 11 C 0.489 3.511 12 O -0.502 6.502 13 O -0.535 6.535 14 C 0.462 3.538 15 O -0.578 6.578 16 C -0.126 4.126 17 C -0.024 4.024 18 C 0.315 3.685 19 N -0.482 5.482 20 C 0.008 3.992 21 C -0.022 4.022 22 C -0.186 4.186 23 C 0.129 3.871 24 N -0.484 5.484 25 C 0.234 3.766 26 N -0.586 5.586 27 H 0.428 0.572 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.393 0.607 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 -15.578 -7.352 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.173 4.173 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.127 0.873 9 N -0.149 5.149 10 C 0.018 3.982 11 C 0.329 3.671 12 O -0.387 6.387 13 O -0.346 6.346 14 C 0.250 3.750 15 O -0.462 6.462 16 C -0.167 4.167 17 C -0.063 4.063 18 C 0.048 3.952 19 N -0.202 5.202 20 C -0.113 4.113 21 C -0.049 4.049 22 C -0.209 4.209 23 C -0.038 4.038 24 N -0.197 5.197 25 C -0.002 4.002 26 N -0.200 5.200 27 H 0.268 0.732 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.776 -15.179 -6.858 16.886 hybrid contribution -0.228 0.627 0.257 0.715 sum -3.004 -14.552 -6.601 16.259 Atomic orbital electron populations 1.69812 1.06058 1.27963 1.48089 1.25247 0.95307 1.00022 0.96757 0.85862 0.79520 0.80641 0.78330 1.20278 1.21100 1.19339 1.19734 0.97943 0.83345 1.42391 0.87320 1.43424 1.20163 1.05445 1.45826 1.20682 0.81496 1.04769 0.91261 1.23766 0.83317 0.70965 0.89022 1.90623 1.85808 1.44770 1.17452 1.84512 1.17354 1.86310 1.46392 1.19868 0.87336 0.84079 0.83675 1.90530 1.26597 1.86475 1.42601 1.21509 1.01110 0.92593 1.01536 1.19997 0.97983 0.84983 1.03347 1.24014 0.88779 0.91607 0.90817 1.70527 1.12670 1.12744 1.24253 1.19820 0.94934 0.94770 1.01796 1.20771 0.96443 0.91984 0.95744 1.21861 0.99915 0.97750 1.01346 1.22522 0.87107 0.97639 0.96529 1.66374 1.32038 1.03201 1.18091 1.18960 0.89702 0.91339 1.00231 1.42875 1.13570 1.16900 1.46699 0.73235 0.91832 0.85400 0.90466 0.75087 0.90242 0.88788 0.88771 0.87255 0.84071 0.83970 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.73 9.28 55.50 0.52 -22.22 16 2 C 0.03 0.75 4.87 -17.47 -0.09 0.67 16 3 Si 0.93 20.12 29.60 -169.99 -5.03 15.09 16 4 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.21 9.34 -14.93 -0.14 -8.35 16 8 H 0.11 3.04 7.37 -52.48 -0.39 2.66 16 9 N -0.43 -10.46 2.18 -116.10 -0.25 -10.72 16 10 C 0.14 3.06 4.97 -5.20 -0.03 3.04 16 11 C 0.49 10.76 5.86 36.01 0.21 10.97 16 12 O -0.50 -12.98 16.79 -18.75 -0.31 -13.29 16 13 O -0.53 -9.63 13.42 -39.28 -0.53 -10.15 16 14 C 0.46 10.62 7.41 -10.98 -0.08 10.54 16 15 O -0.58 -14.92 15.62 5.55 0.09 -14.83 16 16 C -0.13 -2.23 4.25 -27.88 -0.12 -2.34 16 17 C -0.02 -0.36 5.13 -27.88 -0.14 -0.50 16 18 C 0.32 4.57 7.37 -154.75 -1.14 3.43 16 19 N -0.48 -7.82 11.22 -8.19 -0.09 -7.92 16 20 C 0.01 0.11 7.24 -84.67 -0.61 -0.50 16 21 C -0.02 -0.25 10.22 -39.01 -0.40 -0.65 16 22 C -0.19 -1.61 10.09 -39.47 -0.40 -2.01 16 23 C 0.13 1.22 11.16 -17.47 -0.19 1.03 16 24 N -0.48 -6.14 10.38 -12.27 -0.13 -6.27 16 25 C 0.23 3.26 8.46 -155.63 -1.32 1.95 16 26 N -0.59 -7.36 6.21 -9.47 -0.06 -7.42 16 27 H 0.43 4.07 8.96 -40.82 -0.37 3.70 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.13 2.82 6.37 -51.93 -0.33 2.49 16 30 H 0.08 1.33 6.69 -51.93 -0.35 0.98 16 31 H 0.39 5.49 9.10 45.56 0.41 5.90 16 32 H 0.08 1.21 7.42 -51.92 -0.39 0.82 16 33 H 0.09 1.77 7.52 -51.93 -0.39 1.38 16 34 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.11 1.76 8.10 -51.93 -0.42 1.34 16 36 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -35.62 334.52 -8.24 -43.86 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -3.04 Total: 11.56 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: -4.44 Total: 17.26 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.02 Total: -54.54 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.76 Total: -38.28 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.62 -8.24 -43.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.967 kcal (2) G-P(sol) polarization free energy of solvation -35.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds