Wall clock time and date at job start Tue Mar 31 2020 11:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47446 * 2 1 4 4 C 1.46495 * 119.99974 * 275.00479 * 3 2 1 5 5 C 1.50706 * 109.46877 * 274.99615 * 4 3 2 6 6 H 1.07990 * 119.99981 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99508 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00506 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99635 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47141 * 90.00003 * 9 7 5 11 11 H 1.48497 * 109.47065 * 209.99779 * 9 7 5 12 12 H 1.48501 * 109.47004 * 329.99562 * 9 7 5 13 13 S 1.65605 * 119.99744 * 95.00194 * 3 2 1 14 14 O 1.42097 * 106.40130 * 156.45901 * 13 3 2 15 15 O 1.42103 * 106.40059 * 23.54146 * 13 3 2 16 16 N 1.65600 * 107.21803 * 270.00365 * 13 3 2 17 17 C 1.49197 * 129.44060 * 276.61483 * 16 13 3 18 18 C 1.56746 * 99.23214 * 179.86647 * 17 16 13 19 19 C 1.57868 * 105.98188 * 41.30209 * 18 17 16 20 20 C 1.49810 * 129.44551 * 96.63860 * 16 13 3 21 21 C 1.50702 * 117.55222 * 358.82480 * 20 16 13 22 22 O 1.20820 * 120.00011 * 139.50444 * 21 20 16 23 23 O 1.34229 * 119.99295 * 319.51216 * 21 20 16 24 24 C 1.54875 * 103.53566 * 224.03998 * 20 16 13 25 25 H 1.09006 * 109.46701 * 300.00049 * 1 2 3 26 26 H 1.08999 * 109.47244 * 59.99282 * 1 2 3 27 27 H 1.08995 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46681 * 240.00502 * 2 1 3 29 29 H 1.08999 * 109.47244 * 120.00717 * 2 1 3 30 30 H 1.08998 * 109.47778 * 34.99892 * 4 3 2 31 31 H 1.09003 * 109.47016 * 155.00163 * 4 3 2 32 32 H 0.96996 * 120.00258 * 180.02562 * 8 7 5 33 33 H 1.08996 * 111.44298 * 297.37333 * 17 16 13 34 34 H 1.09004 * 111.44265 * 62.36239 * 17 16 13 35 35 H 1.08999 * 118.46806 * 181.31038 * 18 17 16 36 36 H 1.08998 * 114.84055 * 188.45306 * 19 18 17 37 37 H 1.09000 * 114.68973 * 54.23488 * 19 18 17 38 38 H 0.96700 * 116.99205 * 180.02562 * 23 21 20 39 39 H 1.09001 * 114.45186 * 47.50984 * 24 20 16 40 40 H 1.08996 * 114.45566 * 180.95154 * 24 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4949 1.7888 -1.8823 6 1 4.1721 1.1111 -1.3840 7 6 3.8529 2.3614 -3.0843 8 7 3.0280 3.1863 -3.6914 9 14 5.5093 1.9643 -3.8513 10 1 5.3730 0.7817 -4.7392 11 1 5.9787 3.1279 -4.6455 12 1 6.4929 1.6676 -2.7791 13 16 2.4124 2.1201 1.4288 14 8 3.3286 3.1569 1.1050 15 8 2.7097 1.0797 2.3499 16 7 1.0433 2.8641 1.9896 17 6 0.4761 4.1976 1.6347 18 6 -0.7938 4.1833 2.5535 19 6 -0.3273 3.5671 3.9301 20 6 0.0395 2.3806 2.9911 21 6 0.2516 1.0122 3.5857 22 8 0.0444 0.8256 4.7613 23 8 0.6708 0.0007 2.8092 24 6 -1.3207 2.7392 2.3431 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.3618 1.8098 -1.9453 31 1 2.0923 3.1803 -1.0755 32 1 3.2798 3.5888 -4.5373 33 1 1.1558 5.0050 1.9067 34 1 0.2044 4.2472 0.5802 35 1 -1.4691 5.0382 2.5197 36 1 -1.1327 3.3555 4.6334 37 1 0.5286 4.0654 4.3853 38 1 0.7922 -0.8587 3.2355 39 1 -1.4116 2.4508 1.2959 40 1 -2.1906 2.4738 2.9438 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605436710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:11 Heat of formation + Delta-G solvation = -116.729981 kcal Electronic energy + Delta-G solvation = -27320.295041 eV Core-core repulsion = 23456.665380 eV Total energy + Delta-G solvation = -3863.629661 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41071 -40.43999 -38.30058 -37.66147 -37.04478 -36.85821 -34.70682 -32.90806 -31.48002 -29.71460 -28.47849 -26.33437 -25.12492 -24.91478 -23.28672 -22.30824 -21.02416 -19.94540 -19.23269 -18.82049 -18.41605 -18.33215 -17.32073 -16.80801 -16.48240 -16.40180 -15.94642 -15.50513 -15.43076 -15.06034 -14.69106 -14.54369 -13.86930 -13.80862 -13.57961 -13.36480 -13.29516 -13.17355 -13.07646 -12.95111 -12.75771 -12.72782 -12.68677 -12.47289 -12.41824 -12.21489 -12.14697 -12.12001 -11.75196 -11.55117 -11.42783 -11.20260 -10.60329 -10.12333 -9.76285 -8.21075 -6.32586 -0.46232 0.99040 1.37428 1.39751 1.50177 1.92254 2.02912 2.38709 2.55318 3.05709 3.09859 3.15458 3.33270 3.38604 3.61572 4.06028 4.16813 4.37102 4.51599 4.58177 4.63995 4.70129 4.72601 4.81449 4.83096 4.86738 4.91448 5.04301 5.09966 5.12735 5.19212 5.21818 5.29530 5.51682 5.55565 5.59683 5.72451 6.01381 6.11725 6.75309 6.96007 7.36074 8.86331 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.005181 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.712427 B = 5403.377460 C = 5736.786258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 N -0.989 5.989 4 C 0.277 3.723 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.277 1.277 13 S 2.808 3.192 14 O -1.011 7.011 15 O -0.987 6.987 16 N -1.015 6.015 17 C 0.116 3.884 18 C -0.096 4.096 19 C -0.108 4.108 20 C 0.110 3.890 21 C 0.513 3.487 22 O -0.533 6.533 23 O -0.490 6.490 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.028 0.972 31 H 0.012 0.988 32 H 0.268 0.732 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.169 0.831 36 H 0.138 0.862 37 H 0.072 0.928 38 H 0.426 0.574 39 H 0.082 0.918 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 -1.424 12.344 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.007 4.007 3 N -0.830 5.830 4 C 0.153 3.847 5 C -0.589 4.589 6 H 0.066 0.934 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.202 1.202 13 S 2.819 3.181 14 O -0.996 6.996 15 O -0.971 6.971 16 N -0.857 5.857 17 C -0.008 4.008 18 C -0.114 4.114 19 C -0.146 4.146 20 C 0.021 3.979 21 C 0.355 3.645 22 O -0.422 6.422 23 O -0.302 6.302 24 C -0.160 4.160 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.186 0.814 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.288 0.712 39 H 0.101 0.899 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.003 -1.104 12.648 18.173 hybrid contribution 1.241 -0.748 -0.722 1.619 sum -11.762 -1.852 11.927 16.853 Atomic orbital electron populations 1.22113 0.94544 1.02885 1.01602 1.21327 0.95474 0.80994 1.02913 1.57619 1.81259 1.22714 1.21420 1.18529 0.95676 0.90078 0.80413 1.21823 1.03378 1.27615 1.06105 0.93374 1.25699 1.00757 0.94684 0.97374 1.69992 1.37667 1.30877 1.17613 0.85625 0.79765 0.78364 0.78385 1.18956 1.20207 1.20206 1.00837 0.72482 0.72229 0.72560 1.93561 1.61028 1.59965 1.84999 1.93491 1.83252 1.57156 1.63243 1.60308 1.41843 1.30033 1.53475 1.22952 0.95163 0.82431 1.00268 1.24734 0.95683 0.98113 0.92907 1.24637 1.02573 0.91753 0.95675 1.22746 0.92078 0.89010 0.94094 1.22319 0.71677 0.86408 0.84060 1.90680 1.49434 1.84516 1.17593 1.84603 1.77307 1.23116 1.45203 1.24309 0.93256 0.96205 1.02214 0.91700 0.93846 0.89915 0.91722 0.89112 0.95387 0.96977 0.92332 0.90091 0.89766 0.81391 0.84454 0.90909 0.71243 0.89943 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.62 71.98 0.69 -3.34 16 2 C 0.12 4.03 5.86 86.38 0.51 4.53 16 3 N -0.99 -41.43 2.83 -519.83 -1.47 -42.90 16 4 C 0.28 14.09 5.10 85.64 0.44 14.52 16 5 C -0.55 -31.54 9.38 25.60 0.24 -31.30 16 6 H 0.05 2.79 7.81 -2.92 -0.02 2.77 16 7 C 0.01 0.83 5.46 84.65 0.46 1.29 16 8 N -0.92 -53.88 13.29 21.45 0.28 -53.59 16 9 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 S 2.81 116.06 6.15 -56.49 -0.35 115.72 16 14 O -1.01 -51.62 16.97 -128.00 -2.17 -53.79 16 15 O -0.99 -40.59 12.99 -118.77 -1.54 -42.13 16 16 N -1.01 -31.22 3.86 -467.43 -1.80 -33.02 16 17 C 0.12 2.84 7.51 87.17 0.65 3.50 16 18 C -0.10 -1.40 6.45 -11.04 -0.07 -1.47 16 19 C -0.11 -1.88 7.43 30.57 0.23 -1.66 16 20 C 0.11 2.64 2.12 -0.24 0.00 2.64 16 21 C 0.51 13.78 7.06 71.24 0.50 14.28 16 22 O -0.53 -15.95 17.44 21.98 0.38 -15.57 16 23 O -0.49 -12.01 6.38 -43.92 -0.28 -12.29 16 24 C -0.12 -1.93 7.09 29.29 0.21 -1.73 16 25 H 0.06 1.58 5.37 -2.38 -0.01 1.57 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 2.34 8.11 -2.38 -0.02 2.33 16 29 H 0.09 2.89 5.73 -2.39 -0.01 2.87 16 30 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 31 H 0.01 0.67 7.61 -2.39 -0.02 0.65 16 32 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.14 1.74 7.92 -2.39 -0.02 1.72 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.43 7.05 9.10 -74.06 -0.67 6.38 16 39 H 0.08 1.46 7.53 -2.39 -0.02 1.44 16 40 H 0.13 1.35 7.92 -2.39 -0.02 1.33 16 Total: -1.00 -78.05 336.24 -0.66 -78.72 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.40 Total: 10.60 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 3.86 Total: 1.28 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -2.99 Total: -129.51 kcal Atomic # 8 Polarization: -120.17 SS G_CDS: -3.61 Total: -123.79 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 116.06 SS G_CDS: -0.35 Total: 115.72 kcal Total: -78.05 -0.66 -78.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605436710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.014 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds