Wall clock time and date at job start Tue Mar 31 2020 11:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.50697 * 109.47079 * 85.00200 * 4 3 2 6 6 H 1.08000 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99754 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00085 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47496 * 89.99397 * 9 7 5 11 11 H 1.48492 * 109.47392 * 209.99768 * 9 7 5 12 12 H 1.48508 * 109.47109 * 329.99563 * 9 7 5 13 13 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 14 14 O 1.42099 * 106.40321 * 203.53813 * 13 3 2 15 15 O 1.42097 * 106.40157 * 336.45932 * 13 3 2 16 16 N 1.65600 * 107.21849 * 90.00219 * 13 3 2 17 17 C 1.46497 * 120.00355 * 64.99677 * 16 13 3 18 18 H 1.09000 * 110.86290 * 335.70416 * 17 16 13 19 19 C 1.54574 * 110.98058 * 99.52401 * 17 16 13 20 20 C 1.51110 * 104.84503 * 143.15000 * 19 17 16 21 21 C 1.32703 * 110.74165 * 343.39252 * 20 19 17 22 22 C 1.46954 * 124.62409 * 180.02562 * 21 20 19 23 23 O 1.21533 * 120.00317 * 359.97106 * 22 21 20 24 24 O 1.34801 * 119.99652 * 179.97438 * 22 21 20 25 25 C 1.51165 * 110.76176 * 0.03052 * 21 20 19 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 31 31 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 32 32 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 33 33 H 0.97003 * 120.00108 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99802 * 245.00228 * 16 13 3 35 35 H 1.09002 * 110.36222 * 261.99485 * 19 17 16 36 36 H 1.09005 * 110.36216 * 24.30455 * 19 17 16 37 37 H 1.08000 * 124.62920 * 163.43117 * 20 19 17 38 38 H 0.96702 * 116.99714 * 180.02562 * 24 22 21 39 39 H 1.08995 * 110.36136 * 257.72964 * 25 21 20 40 40 H 1.09012 * 110.40246 * 135.39558 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8359 2.7289 -1.6354 6 1 -0.0229 2.5942 -0.9945 7 6 0.7222 3.4674 -2.7942 8 7 1.7678 3.6310 -3.5749 9 14 -0.9169 4.2355 -3.2552 10 1 -1.0065 5.5984 -2.6722 11 1 -1.0250 4.3215 -4.7337 12 1 -2.0227 3.3973 -2.7261 13 16 2.4121 2.1202 1.4288 14 8 2.3056 3.5186 1.2000 15 8 1.6869 1.4414 2.4448 16 7 4.0144 1.8138 1.7137 17 6 5.0350 2.3525 0.8114 18 1 4.6172 2.5444 -0.1769 19 6 5.6747 3.6309 1.3996 20 6 7.1307 3.5529 1.0031 21 6 7.4506 2.3205 0.6291 22 6 8.7877 1.9035 0.1841 23 8 9.6933 2.7128 0.1399 24 8 9.0096 0.6233 -0.1752 25 6 6.2523 1.4039 0.7232 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.9079 2.8919 -1.1513 32 1 2.4688 1.4184 -2.0480 33 1 1.6878 4.1503 -4.3903 34 1 4.2772 1.2774 2.4781 35 1 5.2115 4.5190 0.9697 36 1 5.5770 3.6389 2.4852 37 1 7.8175 4.3863 1.0220 38 1 9.9052 0.3964 -0.4605 39 1 6.3170 0.7857 1.6185 40 1 6.1817 0.7781 -0.1666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605438941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:14 Heat of formation + Delta-G solvation = -152.475960 kcal Electronic energy + Delta-G solvation = -25581.279911 eV Core-core repulsion = 21716.100188 eV Total energy + Delta-G solvation = -3865.179723 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44588 -38.66133 -36.64023 -36.22283 -36.08436 -35.18419 -33.66397 -32.61599 -29.84934 -28.94855 -27.84555 -26.76333 -23.60675 -22.82828 -21.90266 -21.21084 -19.27944 -18.95469 -17.99951 -17.29852 -17.16498 -16.70265 -16.35550 -16.16474 -15.64420 -15.04243 -14.50795 -14.35158 -13.78917 -13.49089 -13.08794 -12.97262 -12.94801 -12.77903 -12.37006 -12.24503 -12.07608 -11.83682 -11.73919 -11.69009 -11.49851 -11.43248 -11.30040 -11.19898 -11.01351 -10.98468 -10.76266 -10.48270 -10.40971 -9.92965 -9.64855 -9.42087 -9.21143 -8.45130 -8.13461 -6.08508 -4.11371 0.94332 1.16741 2.78607 2.91679 3.31475 3.37747 3.39910 3.44298 4.05570 4.36284 4.43150 4.50159 4.86028 4.97073 5.00066 5.17845 5.24639 5.37850 5.42765 5.53436 5.56102 5.72384 5.83021 5.84526 5.95229 6.11086 6.13890 6.24041 6.28961 6.29734 6.39026 6.67512 6.97320 7.05716 7.19617 7.37344 7.59610 7.73016 7.89504 8.18510 8.90692 9.53692 11.00149 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.004314 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.709983 B = 6489.479565 C = 7384.639209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.136 3.864 3 N -0.993 5.993 4 C 0.256 3.744 5 C -0.525 4.525 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.777 3.223 14 O -0.961 6.961 15 O -0.996 6.996 16 N -1.126 6.126 17 C 0.151 3.849 18 H 0.112 0.888 19 C -0.129 4.129 20 C -0.036 4.036 21 C -0.188 4.188 22 C 0.538 3.462 23 O -0.522 6.522 24 O -0.510 6.510 25 C -0.083 4.083 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.409 0.591 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.411 0.589 39 H 0.086 0.914 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.988 -7.098 8.335 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.835 5.835 4 C 0.134 3.866 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.785 3.215 14 O -0.944 6.944 15 O -0.980 6.980 16 N -0.882 5.882 17 C 0.043 3.957 18 H 0.130 0.870 19 C -0.168 4.168 20 C -0.055 4.055 21 C -0.189 4.189 22 C 0.383 3.617 23 O -0.413 6.413 24 O -0.321 6.321 25 C -0.122 4.122 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.162 0.838 38 H 0.269 0.731 39 H 0.104 0.896 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.227 -6.086 8.663 14.720 hybrid contribution 0.211 -0.098 -0.522 0.572 sum 10.438 -6.184 8.141 14.611 Atomic orbital electron populations 1.22261 0.96387 1.00852 1.03677 1.20948 0.94820 0.82138 1.01119 1.57765 1.78401 1.23096 1.24283 1.19103 0.97583 0.90838 0.79077 1.21502 0.96329 1.31821 1.06764 0.91879 1.24913 0.96807 0.96005 0.96217 1.69905 1.29286 1.40644 1.13687 0.86560 0.83941 0.79966 0.77356 1.20475 1.21237 1.19811 1.02123 0.72516 0.74031 0.72823 1.93635 1.85145 1.30339 1.85274 1.93553 1.69933 1.76294 1.58191 1.56366 1.25644 1.68171 1.38016 1.21555 0.88524 0.91854 0.93797 0.86997 1.22115 0.91203 1.00736 1.02716 1.24260 0.97275 0.95741 0.88243 1.20825 0.92170 0.97185 1.08761 1.20562 0.88402 0.79506 0.73192 1.90908 1.45512 1.53357 1.51479 1.84637 1.39445 1.29734 1.78314 1.21428 0.89809 0.97090 1.03861 0.90254 0.93095 0.92872 0.92132 0.91044 0.94605 0.94663 0.92722 0.75818 0.88024 0.88273 0.83809 0.73072 0.89582 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.83 37.16 0.37 -2.59 16 2 C 0.14 2.24 6.09 -4.04 -0.02 2.22 16 3 N -0.99 -19.10 2.86 -115.66 -0.33 -19.43 16 4 C 0.26 5.95 4.88 -5.19 -0.03 5.92 16 5 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 16 6 H 0.06 1.69 6.89 -52.49 -0.36 1.33 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -25.19 13.29 55.43 0.74 -24.46 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 S 2.78 51.02 5.98 -107.50 -0.64 50.37 16 14 O -0.96 -21.41 16.87 -57.17 -0.96 -22.37 16 15 O -1.00 -19.55 17.11 -57.17 -0.98 -20.53 16 16 N -1.13 -14.78 5.64 -3.49 -0.02 -14.80 16 17 C 0.15 1.93 3.69 -66.28 -0.24 1.69 16 18 H 0.11 1.66 6.35 -51.93 -0.33 1.33 16 19 C -0.13 -1.49 6.53 -26.86 -0.18 -1.67 16 20 C -0.04 -0.39 10.43 -35.99 -0.38 -0.77 16 21 C -0.19 -2.11 6.09 -102.75 -0.63 -2.73 16 22 C 0.54 6.26 8.31 34.26 0.28 6.54 16 23 O -0.52 -7.41 17.55 -19.29 -0.34 -7.75 16 24 O -0.51 -4.55 13.25 -40.77 -0.54 -5.09 16 25 C -0.08 -0.88 6.30 -26.83 -0.17 -1.05 16 26 H 0.08 1.53 6.59 -51.93 -0.34 1.19 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.86 7.61 -51.93 -0.40 0.46 16 30 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 31 H 0.04 0.87 6.21 -51.93 -0.32 0.55 16 32 H 0.04 0.84 8.00 -51.93 -0.42 0.42 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.41 4.19 8.66 -34.47 -0.30 3.89 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.14 1.38 8.03 -52.49 -0.42 0.96 16 38 H 0.41 1.79 9.11 45.56 0.42 2.21 16 39 H 0.09 0.77 7.86 -51.93 -0.41 0.37 16 40 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -34.53 351.71 -8.72 -43.25 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.54 Total: 4.29 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.38 Total: -5.07 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.39 Total: -58.68 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -2.82 Total: -55.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.64 Total: 50.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.53 -8.72 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.229 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds