Wall clock time and date at job start Tue Mar 31 2020 11:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.50697 * 109.47079 * 85.00200 * 4 3 2 6 6 H 1.08000 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99754 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00085 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47496 * 89.99397 * 9 7 5 11 11 H 1.48492 * 109.47392 * 209.99768 * 9 7 5 12 12 H 1.48508 * 109.47109 * 329.99563 * 9 7 5 13 13 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 14 14 O 1.42099 * 106.40321 * 203.53813 * 13 3 2 15 15 O 1.42097 * 106.40157 * 336.45932 * 13 3 2 16 16 N 1.65600 * 107.21849 * 90.00219 * 13 3 2 17 17 C 1.46497 * 120.00355 * 64.99677 * 16 13 3 18 18 H 1.09000 * 110.86290 * 335.70416 * 17 16 13 19 19 C 1.54574 * 110.98058 * 99.52401 * 17 16 13 20 20 C 1.51110 * 104.84503 * 143.15000 * 19 17 16 21 21 C 1.32703 * 110.74165 * 343.39252 * 20 19 17 22 22 C 1.46954 * 124.62409 * 180.02562 * 21 20 19 23 23 O 1.21533 * 120.00317 * 359.97106 * 22 21 20 24 24 O 1.34801 * 119.99652 * 179.97438 * 22 21 20 25 25 C 1.51165 * 110.76176 * 0.03052 * 21 20 19 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 31 31 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 32 32 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 33 33 H 0.97003 * 120.00108 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99802 * 245.00228 * 16 13 3 35 35 H 1.09002 * 110.36222 * 261.99485 * 19 17 16 36 36 H 1.09005 * 110.36216 * 24.30455 * 19 17 16 37 37 H 1.08000 * 124.62920 * 163.43117 * 20 19 17 38 38 H 0.96702 * 116.99714 * 180.02562 * 24 22 21 39 39 H 1.08995 * 110.36136 * 257.72964 * 25 21 20 40 40 H 1.09012 * 110.40246 * 135.39558 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8359 2.7289 -1.6354 6 1 -0.0229 2.5942 -0.9945 7 6 0.7222 3.4674 -2.7942 8 7 1.7678 3.6310 -3.5749 9 14 -0.9169 4.2355 -3.2552 10 1 -1.0065 5.5984 -2.6722 11 1 -1.0250 4.3215 -4.7337 12 1 -2.0227 3.3973 -2.7261 13 16 2.4121 2.1202 1.4288 14 8 2.3056 3.5186 1.2000 15 8 1.6869 1.4414 2.4448 16 7 4.0144 1.8138 1.7137 17 6 5.0350 2.3525 0.8114 18 1 4.6172 2.5444 -0.1769 19 6 5.6747 3.6309 1.3996 20 6 7.1307 3.5529 1.0031 21 6 7.4506 2.3205 0.6291 22 6 8.7877 1.9035 0.1841 23 8 9.6933 2.7128 0.1399 24 8 9.0096 0.6233 -0.1752 25 6 6.2523 1.4039 0.7232 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.9079 2.8919 -1.1513 32 1 2.4688 1.4184 -2.0480 33 1 1.6878 4.1503 -4.3903 34 1 4.2772 1.2774 2.4781 35 1 5.2115 4.5190 0.9697 36 1 5.5770 3.6389 2.4852 37 1 7.8175 4.3863 1.0220 38 1 9.9052 0.3964 -0.4605 39 1 6.3170 0.7857 1.6185 40 1 6.1817 0.7781 -0.1666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605438941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:13 Heat of formation + Delta-G solvation = -179.219393 kcal Electronic energy + Delta-G solvation = -25582.439593 eV Core-core repulsion = 21716.100188 eV Total energy + Delta-G solvation = -3866.339405 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32587 -39.60786 -38.20091 -37.66486 -37.05576 -36.78342 -34.76213 -34.60140 -31.40307 -29.86334 -28.83632 -28.60210 -24.69354 -24.43788 -23.38861 -22.21813 -20.59632 -19.85171 -18.96436 -18.77902 -18.41322 -18.21368 -17.90588 -17.33144 -16.77318 -16.51859 -16.03418 -15.52261 -15.21368 -14.71845 -14.66466 -14.35368 -13.95075 -13.88727 -13.69958 -13.60790 -13.30808 -13.15624 -13.08599 -12.97277 -12.93385 -12.81215 -12.78175 -12.72386 -12.56913 -12.39163 -12.19686 -12.07471 -11.70649 -11.59395 -11.44917 -10.59379 -10.48398 -10.09098 -9.78304 -8.15225 -6.23647 -0.29742 0.07421 1.40613 1.43459 1.51540 1.91354 2.05440 2.15759 2.43534 2.67679 3.16705 3.44606 3.47731 3.55026 3.97257 4.05244 4.11252 4.12780 4.39380 4.52327 4.56342 4.63059 4.72896 4.76910 4.85955 4.93395 5.01220 5.18817 5.24013 5.27031 5.28182 5.39275 5.51956 5.58067 5.62281 5.78320 5.94868 6.18635 6.22064 6.84048 6.99590 7.44011 8.92162 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.004314 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.709983 B = 6489.479565 C = 7384.639209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.126 3.874 3 N -0.997 5.997 4 C 0.271 3.729 5 C -0.536 4.536 6 H 0.054 0.946 7 C 0.015 3.985 8 N -0.923 5.923 9 Si 0.945 3.055 10 H -0.282 1.282 11 H -0.278 1.278 12 H -0.267 1.267 13 S 2.793 3.207 14 O -1.005 7.005 15 O -1.007 7.007 16 N -1.103 6.103 17 C 0.143 3.857 18 H 0.087 0.913 19 C -0.129 4.129 20 C -0.031 4.031 21 C -0.197 4.197 22 C 0.543 3.457 23 O -0.553 6.553 24 O -0.504 6.504 25 C -0.072 4.072 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.427 0.573 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.154 0.846 38 H 0.431 0.569 39 H 0.110 0.890 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.511 -8.550 9.124 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.001 3.999 3 N -0.838 5.838 4 C 0.147 3.853 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.564 5.564 9 Si 0.771 3.229 10 H -0.208 1.208 11 H -0.203 1.203 12 H -0.191 1.191 13 S 2.801 3.199 14 O -0.988 6.988 15 O -0.991 6.991 16 N -0.864 5.864 17 C 0.035 3.965 18 H 0.106 0.894 19 C -0.168 4.168 20 C -0.050 4.050 21 C -0.198 4.198 22 C 0.390 3.610 23 O -0.447 6.447 24 O -0.317 6.317 25 C -0.111 4.111 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.264 0.736 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.172 0.828 38 H 0.293 0.707 39 H 0.128 0.872 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.744 -7.589 9.468 16.207 hybrid contribution 0.089 0.277 -0.723 0.779 sum 10.833 -7.313 8.745 15.726 Atomic orbital electron populations 1.22243 0.97001 1.02432 1.01451 1.21250 0.94427 0.80913 1.03330 1.57653 1.79215 1.24053 1.22922 1.18680 0.95588 0.90472 0.80520 1.21849 0.97432 1.31738 1.06566 0.92746 1.25612 0.99664 0.96676 0.96465 1.69986 1.30778 1.41498 1.14108 0.85747 0.80778 0.78903 0.77443 1.20777 1.20315 1.19133 1.01404 0.73317 0.72945 0.72221 1.93582 1.86250 1.33192 1.85773 1.93529 1.71112 1.76197 1.58293 1.55760 1.23737 1.68288 1.38663 1.21604 0.88914 0.93396 0.92614 0.89447 1.22090 0.91576 0.99419 1.03666 1.24291 0.96739 0.96117 0.87825 1.20900 0.92369 0.97488 1.09068 1.20546 0.88026 0.79885 0.72561 1.90900 1.46404 1.54338 1.53037 1.84591 1.41265 1.28136 1.77705 1.21356 0.88087 0.96567 1.05088 0.93067 0.89684 0.94372 0.89091 0.89584 0.96054 0.95292 0.92630 0.73599 0.89484 0.86560 0.82815 0.70730 0.87223 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.71 9.83 71.98 0.71 -5.00 16 2 C 0.13 3.94 6.09 86.38 0.53 4.47 16 3 N -1.00 -37.94 2.86 -519.85 -1.48 -39.43 16 4 C 0.27 12.77 4.88 85.63 0.42 13.19 16 5 C -0.54 -28.95 8.41 25.60 0.22 -28.74 16 6 H 0.05 2.97 6.89 -2.91 -0.02 2.95 16 7 C 0.02 0.83 5.46 84.65 0.46 1.29 16 8 N -0.92 -52.56 13.29 21.45 0.28 -52.28 16 9 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 S 2.79 101.03 5.98 -56.49 -0.34 100.69 16 14 O -1.00 -45.43 16.87 -128.00 -2.16 -47.59 16 15 O -1.01 -38.24 17.11 -128.00 -2.19 -40.43 16 16 N -1.10 -27.16 5.64 -164.94 -0.93 -28.09 16 17 C 0.14 3.51 3.69 46.06 0.17 3.68 16 18 H 0.09 2.63 6.35 -2.39 -0.02 2.62 16 19 C -0.13 -2.87 6.53 30.51 0.20 -2.67 16 20 C -0.03 -0.63 10.43 24.64 0.26 -0.37 16 21 C -0.20 -4.08 6.09 -18.60 -0.11 -4.19 16 22 C 0.54 11.73 8.31 70.11 0.58 12.32 16 23 O -0.55 -15.13 17.55 19.73 0.35 -14.78 16 24 O -0.50 -7.82 13.25 -57.13 -0.76 -8.57 16 25 C -0.07 -1.38 6.30 30.53 0.19 -1.19 16 26 H 0.05 1.97 6.59 -2.39 -0.02 1.95 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 2.30 7.61 -2.39 -0.02 2.28 16 30 H 0.09 2.44 8.00 -2.39 -0.02 2.42 16 31 H 0.02 1.08 6.21 -2.39 -0.01 1.06 16 32 H 0.03 1.39 8.00 -2.39 -0.02 1.38 16 33 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.43 7.55 8.66 -96.74 -0.84 6.71 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.12 2.17 8.08 -2.38 -0.02 2.15 16 37 H 0.15 2.80 8.03 -2.91 -0.02 2.77 16 38 H 0.43 2.75 9.11 -74.06 -0.67 2.07 16 39 H 0.11 1.58 7.86 -2.39 -0.02 1.56 16 40 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -74.31 351.71 -2.01 -76.31 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.42 Total: 15.44 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 3.62 Total: -7.21 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -2.13 Total: -119.79 kcal Atomic # 8 Polarization: -106.61 SS G_CDS: -4.76 Total: -111.37 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 101.03 SS G_CDS: -0.34 Total: 100.69 kcal Total: -74.31 -2.01 -76.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.906 kcal (2) G-P(sol) polarization free energy of solvation -74.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds