Wall clock time and date at job start Tue Mar 31 2020 11:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47149 * 2 1 4 4 C 1.46503 * 119.99865 * 274.99911 * 3 2 1 5 5 C 1.50698 * 109.47292 * 275.97191 * 4 3 2 6 6 H 1.08009 * 119.99668 * 4.97327 * 5 4 3 7 7 C 1.37869 * 120.00187 * 184.97431 * 5 4 3 8 8 N 1.31511 * 120.00245 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46980 * 119.99785 * 9 7 5 12 12 H 1.48493 * 109.47402 * 240.00179 * 9 7 5 13 13 S 1.65595 * 119.99999 * 94.99905 * 3 2 1 14 14 O 1.42092 * 106.40642 * 342.23733 * 13 3 2 15 15 O 1.42104 * 106.40122 * 209.31783 * 13 3 2 16 16 N 1.65600 * 107.21977 * 95.78100 * 13 3 2 17 17 C 1.46505 * 119.99827 * 295.64459 * 16 13 3 18 18 H 1.09003 * 110.86182 * 21.03134 * 17 16 13 19 19 C 1.54571 * 110.97814 * 257.17066 * 17 16 13 20 20 C 1.51108 * 104.84548 * 216.84770 * 19 17 16 21 21 C 1.32706 * 110.74061 * 16.61034 * 20 19 17 22 22 C 1.46954 * 124.62792 * 180.02562 * 21 20 19 23 23 O 1.21535 * 120.00213 * 359.96804 * 22 21 20 24 24 O 1.34798 * 119.99924 * 179.97438 * 22 21 20 25 25 C 1.51111 * 110.74637 * 359.97438 * 21 20 19 26 26 H 1.09001 * 109.47105 * 300.00375 * 1 2 3 27 27 H 1.09000 * 109.46989 * 60.00079 * 1 2 3 28 28 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47105 * 239.99625 * 2 1 3 30 30 H 1.09000 * 109.46989 * 119.99921 * 2 1 3 31 31 H 1.09000 * 109.47031 * 35.96931 * 4 3 2 32 32 H 1.08991 * 109.47082 * 155.96989 * 4 3 2 33 33 H 0.96999 * 120.00448 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99999 * 115.64005 * 16 13 3 35 35 H 1.09000 * 110.36868 * 335.69672 * 19 17 16 36 36 H 1.09007 * 110.36344 * 98.01394 * 19 17 16 37 37 H 1.07998 * 124.63311 * 196.64633 * 20 19 17 38 38 H 0.96704 * 116.99869 * 179.97438 * 24 22 21 39 39 H 1.09000 * 110.36824 * 224.55125 * 25 21 20 40 40 H 1.09002 * 110.36242 * 102.23584 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4847 1.7704 -1.8941 6 1 4.1211 1.0225 -1.4444 7 6 3.8859 2.4155 -3.0446 8 7 3.1108 3.3257 -3.5925 9 14 5.5305 1.9965 -3.8254 10 1 6.2072 0.9473 -3.0213 11 1 5.3098 1.4960 -5.2060 12 1 6.3815 3.2126 -3.8698 13 16 2.4122 2.1202 1.4286 14 8 1.7957 1.3587 2.4577 15 8 2.1750 3.5087 1.2409 16 7 4.0463 1.9488 1.6351 17 6 4.6268 0.6149 1.8084 18 1 3.9575 -0.1531 1.4205 19 6 4.9733 0.3506 3.2914 20 6 6.2562 -0.4470 3.2531 21 6 6.8344 -0.3501 2.0625 22 6 8.0962 -1.0056 1.6912 23 8 8.6850 -1.6937 2.5016 24 8 8.6005 -0.8434 0.4517 25 6 6.0176 0.5251 1.1404 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3518 1.8225 -1.9391 32 1 2.1095 3.1807 -1.0735 33 1 3.3932 3.7799 -4.4018 34 1 4.6192 2.7316 1.6412 35 1 5.1276 1.2921 3.8186 36 1 4.1818 -0.2271 3.7689 37 1 6.6486 -1.0185 4.0812 38 1 9.4331 -1.2939 0.2541 39 1 5.9368 0.0664 0.1549 40 1 6.4652 1.5160 1.0629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605438942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:17 Heat of formation + Delta-G solvation = -155.805557 kcal Electronic energy + Delta-G solvation = -25901.904598 eV Core-core repulsion = 22036.580494 eV Total energy + Delta-G solvation = -3865.324105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40660 -38.61737 -36.67425 -36.17053 -36.06050 -35.26136 -33.55695 -32.73797 -29.97296 -28.91537 -27.73273 -26.65609 -23.56234 -23.18228 -21.73911 -21.15917 -19.17253 -18.92100 -17.94941 -17.23384 -17.14095 -16.73618 -16.34857 -16.10050 -15.65435 -15.14271 -14.50439 -14.30236 -13.87089 -13.54382 -13.23944 -12.98356 -12.88813 -12.74222 -12.30571 -12.15123 -11.99657 -11.91774 -11.70596 -11.67286 -11.62530 -11.53753 -11.41866 -11.24227 -11.08330 -10.94501 -10.72729 -10.54100 -10.39114 -10.09544 -9.78480 -9.28942 -9.16756 -8.52441 -8.10404 -6.13304 -4.19981 0.95196 1.24761 2.81988 2.96932 3.22800 3.31634 3.33347 3.42332 4.07947 4.34380 4.40497 4.54115 4.86428 4.94342 5.02702 5.14232 5.21625 5.37365 5.46216 5.53763 5.66383 5.72934 5.77349 5.80018 5.89532 6.06326 6.16525 6.23770 6.30154 6.35587 6.37538 6.61899 6.63973 7.17877 7.36362 7.43226 7.63282 7.77997 7.83773 8.12925 8.85541 9.46529 10.94603 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.006307 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.664829 B = 4438.567601 C = 6410.054262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.284 1.284 13 S 2.785 3.215 14 O -0.998 6.998 15 O -0.980 6.980 16 N -1.113 6.113 17 C 0.162 3.838 18 H 0.100 0.900 19 C -0.127 4.127 20 C -0.048 4.048 21 C -0.179 4.179 22 C 0.537 3.463 23 O -0.525 6.525 24 O -0.506 6.506 25 C -0.088 4.088 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.415 0.585 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.142 0.858 38 H 0.411 0.589 39 H 0.092 0.908 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -7.788 9.910 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.210 1.210 13 S 2.793 3.207 14 O -0.981 6.981 15 O -0.964 6.964 16 N -0.870 5.870 17 C 0.053 3.947 18 H 0.118 0.882 19 C -0.165 4.165 20 C -0.067 4.067 21 C -0.181 4.181 22 C 0.383 3.617 23 O -0.416 6.416 24 O -0.317 6.317 25 C -0.126 4.126 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.160 0.840 38 H 0.269 0.731 39 H 0.111 0.889 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.935 -7.331 10.621 13.492 hybrid contribution 2.143 -0.351 -1.099 2.434 sum 6.078 -7.682 9.522 13.661 Atomic orbital electron populations 1.22194 0.96881 1.01428 1.02355 1.21048 0.93833 0.82989 1.02150 1.57716 1.78495 1.22875 1.24218 1.19197 0.97245 0.92302 0.78933 1.21579 1.03732 1.22526 1.09760 0.91740 1.24962 0.97241 0.94793 0.96959 1.69942 1.36986 1.25213 1.20640 0.86552 0.83853 0.78416 0.79282 1.19345 1.21100 1.20997 1.01761 0.72760 0.73128 0.73037 1.93545 1.74994 1.73129 1.56448 1.93598 1.83995 1.32379 1.86454 1.56028 1.28750 1.12694 1.89526 1.21303 0.95297 0.84530 0.93558 0.88217 1.22101 0.95029 1.00699 0.98709 1.24188 0.94263 0.92594 0.95646 1.20939 0.94800 1.04124 0.98229 1.20603 0.84505 0.77456 0.79169 1.90895 1.60746 1.38496 1.51447 1.84691 1.43302 1.70640 1.33021 1.21477 0.92583 0.99715 0.98853 0.92798 0.92012 0.92294 0.90127 0.91759 0.94650 0.93016 0.92659 0.75149 0.88223 0.88715 0.83990 0.73095 0.88928 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.13 2.04 5.92 -4.04 -0.02 2.01 16 3 N -0.99 -19.05 2.83 -115.66 -0.33 -19.38 16 4 C 0.25 5.78 5.45 -5.19 -0.03 5.76 16 5 C -0.54 -13.27 9.38 -34.44 -0.32 -13.59 16 6 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 9 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 S 2.79 51.35 6.02 -107.50 -0.65 50.71 16 14 O -1.00 -18.61 16.69 -57.17 -0.95 -19.56 16 15 O -0.98 -21.75 16.82 -57.17 -0.96 -22.71 16 16 N -1.11 -16.54 5.62 -3.49 -0.02 -16.56 16 17 C 0.16 2.08 3.72 -66.28 -0.25 1.84 16 18 H 0.10 1.27 6.98 -51.93 -0.36 0.91 16 19 C -0.13 -1.33 6.53 -26.86 -0.18 -1.50 16 20 C -0.05 -0.49 10.43 -35.99 -0.38 -0.87 16 21 C -0.18 -2.13 6.09 -102.78 -0.63 -2.76 16 22 C 0.54 6.76 8.31 34.26 0.28 7.04 16 23 O -0.52 -7.64 17.55 -19.29 -0.34 -7.98 16 24 O -0.51 -5.52 13.25 -40.76 -0.54 -6.06 16 25 C -0.09 -1.12 6.29 -26.86 -0.17 -1.29 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.06 0.91 6.60 -51.93 -0.34 0.56 16 31 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.05 1.37 6.98 -51.93 -0.36 1.00 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.41 5.59 8.71 -34.47 -0.30 5.29 16 35 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.14 1.27 8.03 -52.49 -0.42 0.85 16 38 H 0.41 2.51 9.11 45.56 0.42 2.93 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -33.37 356.19 -8.81 -42.18 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.70 Total: 7.00 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.40 Total: -3.95 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.39 Total: -60.04 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -2.79 Total: -56.31 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 51.35 SS G_CDS: -0.65 Total: 50.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.37 -8.81 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.628 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds