Wall clock time and date at job start Tue Mar 31 2020 11:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47149 * 2 1 4 4 C 1.46503 * 119.99865 * 274.99911 * 3 2 1 5 5 C 1.50698 * 109.47292 * 275.97191 * 4 3 2 6 6 H 1.08009 * 119.99668 * 4.97327 * 5 4 3 7 7 C 1.37869 * 120.00187 * 184.97431 * 5 4 3 8 8 N 1.31511 * 120.00245 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46980 * 119.99785 * 9 7 5 12 12 H 1.48493 * 109.47402 * 240.00179 * 9 7 5 13 13 S 1.65595 * 119.99999 * 94.99905 * 3 2 1 14 14 O 1.42092 * 106.40642 * 342.23733 * 13 3 2 15 15 O 1.42104 * 106.40122 * 209.31783 * 13 3 2 16 16 N 1.65600 * 107.21977 * 95.78100 * 13 3 2 17 17 C 1.46505 * 119.99827 * 295.64459 * 16 13 3 18 18 H 1.09003 * 110.86182 * 21.03134 * 17 16 13 19 19 C 1.54571 * 110.97814 * 257.17066 * 17 16 13 20 20 C 1.51108 * 104.84548 * 216.84770 * 19 17 16 21 21 C 1.32706 * 110.74061 * 16.61034 * 20 19 17 22 22 C 1.46954 * 124.62792 * 180.02562 * 21 20 19 23 23 O 1.21535 * 120.00213 * 359.96804 * 22 21 20 24 24 O 1.34798 * 119.99924 * 179.97438 * 22 21 20 25 25 C 1.51111 * 110.74637 * 359.97438 * 21 20 19 26 26 H 1.09001 * 109.47105 * 300.00375 * 1 2 3 27 27 H 1.09000 * 109.46989 * 60.00079 * 1 2 3 28 28 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47105 * 239.99625 * 2 1 3 30 30 H 1.09000 * 109.46989 * 119.99921 * 2 1 3 31 31 H 1.09000 * 109.47031 * 35.96931 * 4 3 2 32 32 H 1.08991 * 109.47082 * 155.96989 * 4 3 2 33 33 H 0.96999 * 120.00448 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99999 * 115.64005 * 16 13 3 35 35 H 1.09000 * 110.36868 * 335.69672 * 19 17 16 36 36 H 1.09007 * 110.36344 * 98.01394 * 19 17 16 37 37 H 1.07998 * 124.63311 * 196.64633 * 20 19 17 38 38 H 0.96704 * 116.99869 * 179.97438 * 24 22 21 39 39 H 1.09000 * 110.36824 * 224.55125 * 25 21 20 40 40 H 1.09002 * 110.36242 * 102.23584 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4847 1.7704 -1.8941 6 1 4.1211 1.0225 -1.4444 7 6 3.8859 2.4155 -3.0446 8 7 3.1108 3.3257 -3.5925 9 14 5.5305 1.9965 -3.8254 10 1 6.2072 0.9473 -3.0213 11 1 5.3098 1.4960 -5.2060 12 1 6.3815 3.2126 -3.8698 13 16 2.4122 2.1202 1.4286 14 8 1.7957 1.3587 2.4577 15 8 2.1750 3.5087 1.2409 16 7 4.0463 1.9488 1.6351 17 6 4.6268 0.6149 1.8084 18 1 3.9575 -0.1531 1.4205 19 6 4.9733 0.3506 3.2914 20 6 6.2562 -0.4470 3.2531 21 6 6.8344 -0.3501 2.0625 22 6 8.0962 -1.0056 1.6912 23 8 8.6850 -1.6937 2.5016 24 8 8.6005 -0.8434 0.4517 25 6 6.0176 0.5251 1.1404 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3518 1.8225 -1.9391 32 1 2.1095 3.1807 -1.0735 33 1 3.3932 3.7799 -4.4018 34 1 4.6192 2.7316 1.6412 35 1 5.1276 1.2921 3.8186 36 1 4.1818 -0.2271 3.7689 37 1 6.6486 -1.0185 4.0812 38 1 9.4331 -1.2939 0.2541 39 1 5.9368 0.0664 0.1549 40 1 6.4652 1.5160 1.0629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605438942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:16 Heat of formation + Delta-G solvation = -181.091398 kcal Electronic energy + Delta-G solvation = -25903.001075 eV Core-core repulsion = 22036.580494 eV Total energy + Delta-G solvation = -3866.420581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32911 -39.58543 -38.22452 -37.62775 -37.08222 -36.83862 -34.71257 -34.61767 -31.48352 -29.81885 -28.75061 -28.45357 -24.91240 -24.46694 -23.23294 -22.16529 -20.51908 -19.84462 -18.92014 -18.66258 -18.52545 -18.17152 -17.91457 -17.37110 -16.81334 -16.47979 -16.06737 -15.40849 -15.34704 -14.81694 -14.62899 -14.35930 -13.87678 -13.77884 -13.64537 -13.55717 -13.29655 -13.26242 -13.13321 -13.04029 -12.97137 -12.75039 -12.71764 -12.64115 -12.58632 -12.36201 -12.21203 -12.03106 -11.75059 -11.61744 -11.54688 -10.56669 -10.41705 -10.07605 -9.74111 -8.12370 -6.25077 -0.22803 0.08417 1.44834 1.48264 1.58771 1.91166 2.00401 2.17288 2.46420 2.65798 3.20486 3.47433 3.48525 3.58282 3.95807 4.08199 4.12978 4.16028 4.46326 4.48039 4.54939 4.58813 4.75572 4.77442 4.88188 4.98317 5.02558 5.18847 5.28304 5.29748 5.33447 5.42776 5.44698 5.56237 5.58287 5.81608 5.94903 6.16321 6.19708 6.88994 6.97995 7.45467 8.95927 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.006307 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.664829 B = 4438.567601 C = 6410.054262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.996 5.996 4 C 0.261 3.739 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.009 3.991 8 N -0.932 5.932 9 Si 0.954 3.046 10 H -0.252 1.252 11 H -0.287 1.287 12 H -0.287 1.287 13 S 2.800 3.200 14 O -0.997 6.997 15 O -1.022 7.022 16 N -1.105 6.105 17 C 0.151 3.849 18 H 0.103 0.897 19 C -0.123 4.123 20 C -0.021 4.021 21 C -0.200 4.200 22 C 0.541 3.459 23 O -0.551 6.551 24 O -0.510 6.510 25 C -0.084 4.084 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.422 0.578 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.161 0.839 38 H 0.430 0.570 39 H 0.077 0.923 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -9.586 11.145 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.837 5.837 4 C 0.137 3.863 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.190 4.190 8 N -0.572 5.572 9 Si 0.780 3.220 10 H -0.175 1.175 11 H -0.213 1.213 12 H -0.213 1.213 13 S 2.808 3.192 14 O -0.980 6.980 15 O -1.006 7.006 16 N -0.865 5.865 17 C 0.043 3.957 18 H 0.121 0.879 19 C -0.161 4.161 20 C -0.039 4.039 21 C -0.202 4.202 22 C 0.388 3.612 23 O -0.444 6.444 24 O -0.323 6.323 25 C -0.122 4.122 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.178 0.822 38 H 0.291 0.709 39 H 0.096 0.904 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.120 -9.160 11.863 15.838 hybrid contribution 1.747 0.174 -1.428 2.263 sum 6.867 -8.986 10.435 15.388 Atomic orbital electron populations 1.22194 0.96075 1.03228 1.01268 1.21337 0.94659 0.81373 1.03486 1.57618 1.79309 1.24000 1.22753 1.18709 0.96451 0.90812 0.80334 1.21898 1.03929 1.21929 1.09260 0.90332 1.25787 1.00539 0.94824 0.97813 1.70079 1.39016 1.26793 1.21317 0.85563 0.79856 0.78320 0.78309 1.17496 1.21286 1.21327 1.01151 0.73423 0.71930 0.72677 1.93538 1.75625 1.72816 1.56025 1.93542 1.85113 1.35069 1.86914 1.55726 1.27511 1.14113 1.89178 1.21562 0.95316 0.83228 0.95618 0.87903 1.22105 0.95520 1.01610 0.96913 1.24351 0.93219 0.90987 0.95389 1.20862 0.95194 1.05366 0.98772 1.20660 0.84458 0.76892 0.79210 1.90883 1.61557 1.39811 1.52170 1.84654 1.44580 1.70814 1.32258 1.21367 0.92687 0.99797 0.98386 0.93468 0.93510 0.89073 0.89979 0.89153 0.96442 0.96470 0.92810 0.74298 0.86970 0.87319 0.82171 0.70913 0.90449 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.81 10.24 71.98 0.74 -4.07 16 2 C 0.12 3.58 5.92 86.38 0.51 4.09 16 3 N -1.00 -37.93 2.83 -519.84 -1.47 -39.40 16 4 C 0.26 12.56 5.45 85.63 0.47 13.02 16 5 C -0.53 -26.17 9.38 25.60 0.24 -25.93 16 6 H 0.08 3.58 7.81 -2.91 -0.02 3.56 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -53.13 13.29 21.44 0.28 -52.85 16 9 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 10 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 13 S 2.80 101.40 6.02 -56.49 -0.34 101.06 16 14 O -1.00 -35.38 16.69 -128.00 -2.14 -37.52 16 15 O -1.02 -46.08 16.82 -128.00 -2.15 -48.24 16 16 N -1.11 -31.25 5.62 -164.96 -0.93 -32.17 16 17 C 0.15 3.52 3.72 46.05 0.17 3.69 16 18 H 0.10 2.35 6.98 -2.39 -0.02 2.33 16 19 C -0.12 -2.17 6.53 30.51 0.20 -1.97 16 20 C -0.02 -0.36 10.43 24.64 0.26 -0.10 16 21 C -0.20 -4.30 6.09 -18.62 -0.11 -4.41 16 22 C 0.54 12.58 8.31 70.11 0.58 13.16 16 23 O -0.55 -15.08 17.55 19.72 0.35 -14.73 16 24 O -0.51 -10.15 13.25 -57.09 -0.76 -10.91 16 25 C -0.08 -1.98 6.29 30.51 0.19 -1.79 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 30 H 0.09 2.30 6.60 -2.39 -0.02 2.28 16 31 H 0.02 0.89 8.11 -2.39 -0.02 0.87 16 32 H 0.02 0.95 6.98 -2.39 -0.02 0.93 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.42 10.90 8.71 -96.74 -0.84 10.06 16 35 H 0.11 1.78 8.08 -2.39 -0.02 1.77 16 36 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.16 2.26 8.03 -2.91 -0.02 2.24 16 38 H 0.43 4.43 9.11 -74.05 -0.67 3.75 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.09 2.11 7.90 -2.39 -0.02 2.09 16 Total: -1.00 -71.53 356.19 -1.86 -73.39 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.44 Total: 21.80 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 3.71 Total: -3.36 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -2.11 Total: -124.43 kcal Atomic # 8 Polarization: -106.70 SS G_CDS: -4.70 Total: -111.40 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 101.40 SS G_CDS: -0.34 Total: 101.06 kcal Total: -71.53 -1.86 -73.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.703 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds