Wall clock time and date at job start Tue Mar 31 2020 12:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47179 * 2 1 4 4 N 1.30289 * 124.97733 * 304.97334 * 3 2 1 5 5 C 1.34635 * 109.66387 * 180.02562 * 4 3 2 6 6 C 1.40787 * 107.28008 * 0.22164 * 5 4 3 7 7 N 1.32149 * 120.47211 * 180.34060 * 6 5 4 8 8 C 1.31752 * 121.96426 * 359.72807 * 7 6 5 9 9 C 1.38285 * 121.55805 * 0.02562 * 8 7 6 10 10 C 1.39739 * 119.36779 * 359.97438 * 9 8 7 11 11 C 1.47599 * 121.08497 * 180.02562 * 10 9 8 12 12 O 1.21606 * 119.99930 * 193.81600 * 11 10 9 13 13 N 1.34776 * 119.99785 * 13.81566 * 11 10 9 14 14 C 1.36770 * 119.99879 * 188.21968 * 13 11 10 15 15 H 1.08004 * 119.99585 * 297.05693 * 14 13 11 16 16 C 1.39106 * 120.00078 * 116.78590 * 14 13 11 17 17 N 1.31317 * 120.00148 * 51.19221 * 16 14 13 18 18 Si 1.86802 * 119.99866 * 231.18738 * 16 14 13 19 19 H 1.48502 * 109.47176 * 90.00188 * 18 16 14 20 20 H 1.48501 * 109.47300 * 210.00051 * 18 16 14 21 21 H 1.48497 * 109.47274 * 330.00101 * 18 16 14 22 22 C 1.46498 * 119.99805 * 8.21380 * 13 11 10 23 23 C 1.50702 * 109.47529 * 260.66708 * 22 13 11 24 24 O 1.20824 * 119.99490 * 0.02562 * 23 22 13 25 25 O 1.34224 * 120.00099 * 180.02562 * 23 22 13 26 26 N 1.36008 * 124.97614 * 125.59885 * 3 2 1 27 27 H 0.96998 * 126.36071 * 359.40165 * 26 3 2 28 28 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47002 * 299.99932 * 1 2 3 30 30 H 1.09002 * 109.47445 * 59.99618 * 1 2 3 31 31 H 1.09003 * 109.47002 * 240.00068 * 2 1 3 32 32 H 1.09002 * 109.47445 * 120.00382 * 2 1 3 33 33 H 1.07998 * 119.22366 * 179.97438 * 8 7 6 34 34 H 1.08008 * 120.31874 * 180.02562 * 9 8 7 35 35 H 0.97004 * 120.00484 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.47718 * 20.67139 * 22 13 11 37 37 H 1.09002 * 109.46991 * 140.66744 * 22 13 11 38 38 H 0.96700 * 117.00064 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7044 2.3290 -0.8748 5 6 2.3298 3.4852 -0.5837 6 6 3.1106 3.2603 0.5660 7 7 3.8347 4.2361 1.0857 8 6 3.8620 5.4423 0.5564 9 6 3.1309 5.7527 -0.5755 10 6 2.3439 4.7658 -1.1750 11 6 1.5489 5.0554 -2.3844 12 8 0.6863 4.2781 -2.7456 13 7 1.7791 6.1814 -3.0885 14 6 0.9374 6.5353 -4.1067 15 1 0.8383 5.8966 -4.9720 16 6 0.2047 7.7150 -4.0254 17 7 0.8101 8.8459 -3.7448 18 14 -1.6405 7.6903 -4.3155 19 1 -2.3411 7.4582 -3.0268 20 1 -2.0697 8.9931 -4.8845 21 1 -1.9777 6.6000 -5.2656 22 6 2.9307 7.0263 -2.7629 23 6 2.4783 8.1879 -1.9160 24 8 1.3134 8.2983 -1.6149 25 8 3.3694 9.0997 -1.4962 26 7 2.9038 1.9396 0.9062 27 1 3.2985 1.4709 1.6581 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.4692 6.2069 1.0180 34 1 3.1685 6.7482 -0.9929 35 1 0.2993 9.6687 -3.6884 36 1 3.6672 6.4406 -2.2127 37 1 3.3786 7.4006 -3.6835 38 1 3.0319 9.8270 -0.9557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605857610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:53 Heat of formation + Delta-G solvation = 29.326976 kcal Electronic energy + Delta-G solvation = -27331.246904 eV Core-core repulsion = 23370.799548 eV Total energy + Delta-G solvation = -3960.447356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25803 -39.96806 -38.43366 -37.60529 -35.33606 -34.31941 -33.63535 -33.39044 -32.37562 -30.84573 -29.07429 -27.76668 -25.60466 -24.52128 -22.98557 -22.64144 -21.13052 -20.63250 -19.83855 -18.07044 -17.27692 -17.22719 -16.95625 -16.16594 -15.90913 -15.71552 -15.56253 -14.60851 -14.43851 -14.31096 -14.14390 -13.98335 -13.75059 -13.31445 -12.91408 -12.63993 -12.39540 -12.07138 -12.02555 -11.76456 -11.70584 -11.45277 -11.26341 -11.08136 -10.73693 -10.54853 -10.49249 -10.33701 -10.19406 -9.55563 -9.21243 -8.60216 -8.48315 -8.18805 -8.12506 -7.42539 -6.77990 -4.01912 0.75004 1.37534 2.57841 2.92230 3.27276 3.29321 3.42786 3.47089 3.63843 3.93386 4.08931 4.15474 4.41953 4.51223 4.67330 4.71678 4.83933 5.01542 5.08933 5.16307 5.21421 5.42151 5.43395 5.69841 5.72351 5.74843 5.84628 6.02245 6.17740 6.26590 6.28945 6.30935 6.41646 6.77590 7.20935 7.37381 7.47410 7.98668 8.02404 8.42814 8.51717 8.97047 9.12509 9.20110 9.94664 10.35210 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.005269 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.447360 B = 5312.364198 C = 6806.297843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C 0.280 3.720 4 N -0.445 5.445 5 C 0.049 3.951 6 C 0.230 3.770 7 N -0.484 5.484 8 C 0.134 3.866 9 C -0.199 4.199 10 C -0.009 4.009 11 C 0.514 3.486 12 O -0.520 6.520 13 N -0.417 5.417 14 C -0.399 4.399 15 H 0.091 0.909 16 C 0.120 3.880 17 N -0.783 5.783 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.291 1.291 21 H -0.265 1.265 22 C 0.092 3.908 23 C 0.468 3.532 24 O -0.473 6.473 25 O -0.537 6.537 26 N -0.589 5.589 27 H 0.423 0.577 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.274 0.726 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.937 -8.064 9.895 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C 0.013 3.987 4 N -0.163 5.163 5 C -0.074 4.074 6 C -0.006 4.006 7 N -0.198 5.198 8 C -0.031 4.031 9 C -0.222 4.222 10 C -0.023 4.023 11 C 0.302 3.698 12 O -0.398 6.398 13 N -0.140 5.140 14 C -0.522 4.522 15 H 0.109 0.891 16 C -0.099 4.099 17 N -0.410 5.410 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.218 1.218 21 H -0.189 1.189 22 C -0.033 4.033 23 C 0.307 3.693 24 O -0.355 6.355 25 O -0.349 6.349 26 N -0.204 5.204 27 H 0.262 0.738 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.208 -8.843 9.536 14.869 hybrid contribution -0.792 1.073 0.748 1.529 sum 6.415 -7.770 10.285 14.398 Atomic orbital electron populations 1.21716 0.92762 1.02159 1.03849 1.20115 0.97708 0.86056 1.03871 1.23907 0.90598 0.97615 0.86612 1.70245 1.23527 0.98439 1.24122 1.19262 0.98745 0.93743 0.95657 1.18902 0.99433 0.86739 0.95558 1.66182 1.20847 0.99943 1.32850 1.22467 0.96877 0.91404 0.92374 1.23407 0.98727 1.02014 0.98013 1.20316 0.94850 0.90144 0.96955 1.18147 0.84453 0.84845 0.82400 1.90696 1.33823 1.46872 1.68388 1.42803 1.22496 1.18980 1.29683 1.18527 1.23002 1.08956 1.01676 0.89104 1.25433 0.98936 0.93736 0.91748 1.70151 1.37663 0.98953 1.34215 0.86854 0.86603 0.77287 0.79210 1.19998 1.21817 1.18873 1.22100 0.91716 0.89854 0.99605 1.23624 0.84307 0.83099 0.78245 1.90652 1.18828 1.74268 1.51776 1.84529 1.45018 1.38040 1.67340 1.42695 1.41087 1.08390 1.28226 0.73783 0.91662 0.92639 0.90451 0.88369 0.90066 0.81450 0.81518 0.91504 0.87727 0.87506 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.85 37.16 0.37 -1.13 16 2 C -0.04 -0.36 6.56 -27.88 -0.18 -0.55 16 3 C 0.28 4.07 7.37 -154.70 -1.14 2.93 16 4 N -0.44 -8.93 10.65 -8.06 -0.09 -9.01 16 5 C 0.05 1.03 6.85 -84.60 -0.58 0.45 16 6 C 0.23 4.00 8.46 -155.63 -1.32 2.68 16 7 N -0.48 -7.95 10.35 -12.31 -0.13 -8.08 16 8 C 0.13 2.05 11.14 -17.57 -0.20 1.86 16 9 C -0.20 -3.60 7.73 -39.00 -0.30 -3.91 16 10 C -0.01 -0.21 5.74 -104.45 -0.60 -0.81 16 11 C 0.51 13.41 7.53 -12.44 -0.09 13.32 16 12 O -0.52 -15.31 16.27 5.27 0.09 -15.22 16 13 N -0.42 -10.69 2.21 -117.37 -0.26 -10.95 16 14 C -0.40 -11.15 8.37 -15.03 -0.13 -11.28 16 15 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 16 C 0.12 3.26 4.49 -17.45 -0.08 3.18 16 17 N -0.78 -20.47 9.27 55.50 0.51 -19.96 16 18 Si 0.88 21.86 29.69 -169.99 -5.05 16.81 16 19 H -0.27 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.09 1.93 5.18 -5.19 -0.03 1.90 16 23 C 0.47 9.79 4.45 36.01 0.16 9.95 16 24 O -0.47 -11.77 13.82 -18.75 -0.26 -12.02 16 25 O -0.54 -8.72 13.42 -39.24 -0.53 -9.25 16 26 N -0.59 -7.88 6.23 -9.43 -0.06 -7.94 16 27 H 0.42 3.88 8.96 -40.82 -0.37 3.51 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.17 2.98 2.14 -52.62 -0.11 2.87 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.11 1.87 4.48 -51.93 -0.23 1.64 16 37 H 0.11 2.20 8.11 -51.93 -0.42 1.78 16 38 H 0.39 4.88 9.10 45.56 0.41 5.30 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -37.27 324.89 -7.79 -45.06 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.81 Total: 7.06 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: -4.12 Total: 18.60 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.02 Total: -55.93 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.70 Total: -36.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.05 Total: 16.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.27 -7.79 -45.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605857610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.392 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds