Wall clock time and date at job start Tue Mar 31 2020 12:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47179 * 2 1 4 4 N 1.30289 * 124.97733 * 304.97334 * 3 2 1 5 5 C 1.34635 * 109.66387 * 180.02562 * 4 3 2 6 6 C 1.40787 * 107.28008 * 0.22164 * 5 4 3 7 7 N 1.32149 * 120.47211 * 180.34060 * 6 5 4 8 8 C 1.31752 * 121.96426 * 359.72807 * 7 6 5 9 9 C 1.38285 * 121.55805 * 0.02562 * 8 7 6 10 10 C 1.39739 * 119.36779 * 359.97438 * 9 8 7 11 11 C 1.47599 * 121.08497 * 180.02562 * 10 9 8 12 12 O 1.21606 * 119.99930 * 193.81600 * 11 10 9 13 13 N 1.34776 * 119.99785 * 13.81566 * 11 10 9 14 14 C 1.36770 * 119.99879 * 188.21968 * 13 11 10 15 15 H 1.08004 * 119.99585 * 297.05693 * 14 13 11 16 16 C 1.39106 * 120.00078 * 116.78590 * 14 13 11 17 17 N 1.31317 * 120.00148 * 51.19221 * 16 14 13 18 18 Si 1.86802 * 119.99866 * 231.18738 * 16 14 13 19 19 H 1.48502 * 109.47176 * 90.00188 * 18 16 14 20 20 H 1.48501 * 109.47300 * 210.00051 * 18 16 14 21 21 H 1.48497 * 109.47274 * 330.00101 * 18 16 14 22 22 C 1.46498 * 119.99805 * 8.21380 * 13 11 10 23 23 C 1.50702 * 109.47529 * 260.66708 * 22 13 11 24 24 O 1.20824 * 119.99490 * 0.02562 * 23 22 13 25 25 O 1.34224 * 120.00099 * 180.02562 * 23 22 13 26 26 N 1.36008 * 124.97614 * 125.59885 * 3 2 1 27 27 H 0.96998 * 126.36071 * 359.40165 * 26 3 2 28 28 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47002 * 299.99932 * 1 2 3 30 30 H 1.09002 * 109.47445 * 59.99618 * 1 2 3 31 31 H 1.09003 * 109.47002 * 240.00068 * 2 1 3 32 32 H 1.09002 * 109.47445 * 120.00382 * 2 1 3 33 33 H 1.07998 * 119.22366 * 179.97438 * 8 7 6 34 34 H 1.08008 * 120.31874 * 180.02562 * 9 8 7 35 35 H 0.97004 * 120.00484 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.47718 * 20.67139 * 22 13 11 37 37 H 1.09002 * 109.46991 * 140.66744 * 22 13 11 38 38 H 0.96700 * 117.00064 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7044 2.3290 -0.8748 5 6 2.3298 3.4852 -0.5837 6 6 3.1106 3.2603 0.5660 7 7 3.8347 4.2361 1.0857 8 6 3.8620 5.4423 0.5564 9 6 3.1309 5.7527 -0.5755 10 6 2.3439 4.7658 -1.1750 11 6 1.5489 5.0554 -2.3844 12 8 0.6863 4.2781 -2.7456 13 7 1.7791 6.1814 -3.0885 14 6 0.9374 6.5353 -4.1067 15 1 0.8383 5.8966 -4.9720 16 6 0.2047 7.7150 -4.0254 17 7 0.8101 8.8459 -3.7448 18 14 -1.6405 7.6903 -4.3155 19 1 -2.3411 7.4582 -3.0268 20 1 -2.0697 8.9931 -4.8845 21 1 -1.9777 6.6000 -5.2656 22 6 2.9307 7.0263 -2.7629 23 6 2.4783 8.1879 -1.9160 24 8 1.3134 8.2983 -1.6149 25 8 3.3694 9.0997 -1.4962 26 7 2.9038 1.9396 0.9062 27 1 3.2985 1.4709 1.6581 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.4692 6.2069 1.0180 34 1 3.1685 6.7482 -0.9929 35 1 0.2993 9.6687 -3.6884 36 1 3.6672 6.4406 -2.2127 37 1 3.3786 7.4006 -3.6835 38 1 3.0319 9.8270 -0.9557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605857610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:52 Heat of formation + Delta-G solvation = 1.029292 kcal Electronic energy + Delta-G solvation = -27332.473984 eV Core-core repulsion = 23370.799548 eV Total energy + Delta-G solvation = -3961.674436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.55466 -41.63608 -40.03304 -39.16224 -37.02952 -36.14670 -34.98456 -34.47355 -34.15276 -32.37709 -30.43578 -29.43708 -27.36767 -25.78621 -24.36073 -24.10268 -22.73635 -21.76536 -21.44394 -19.52791 -19.09502 -18.67543 -18.56035 -17.74389 -17.55627 -17.11010 -16.91583 -16.49095 -16.06103 -15.93321 -15.50523 -15.30569 -15.01650 -14.93329 -14.41094 -14.15072 -13.87931 -13.83042 -13.60632 -13.40275 -13.05444 -12.69253 -12.58312 -12.50086 -12.23713 -12.15973 -12.12683 -11.99627 -11.72025 -11.31037 -10.90898 -10.30420 -10.12948 -9.89194 -9.55607 -9.36690 -8.85063 -6.12664 -0.66760 0.02358 1.24688 1.36521 1.43002 1.45035 1.61107 1.69694 1.96134 2.16699 2.45555 2.61443 2.85301 2.88300 2.98636 3.38014 3.58778 3.71366 3.84067 4.01901 4.14684 4.20106 4.31197 4.35957 4.58704 4.62926 4.68463 4.83194 4.87411 4.97568 5.01674 5.09815 5.34841 5.38774 5.49162 6.00021 6.15784 6.27194 6.58287 6.71012 6.81125 7.11282 7.14914 7.45462 7.95906 8.27754 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.005269 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.447360 B = 5312.364198 C = 6806.297843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C 0.302 3.698 4 N -0.513 5.513 5 C 0.018 3.982 6 C 0.227 3.773 7 N -0.470 5.470 8 C 0.145 3.855 9 C -0.187 4.187 10 C -0.051 4.051 11 C 0.502 3.498 12 O -0.576 6.576 13 N -0.428 5.428 14 C -0.433 4.433 15 H 0.060 0.940 16 C 0.099 3.901 17 N -0.775 5.775 18 Si 0.912 3.088 19 H -0.296 1.296 20 H -0.264 1.264 21 H -0.274 1.274 22 C 0.090 3.910 23 C 0.481 3.519 24 O -0.518 6.518 25 O -0.514 6.514 26 N -0.566 5.566 27 H 0.446 0.554 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.222 0.778 34 H 0.170 0.830 35 H 0.280 0.720 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -8.316 12.789 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C 0.035 3.965 4 N -0.233 5.233 5 C -0.105 4.105 6 C -0.010 4.010 7 N -0.184 5.184 8 C -0.021 4.021 9 C -0.209 4.209 10 C -0.064 4.064 11 C 0.292 3.708 12 O -0.458 6.458 13 N -0.149 5.149 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.120 4.120 17 N -0.401 5.401 18 Si 0.736 3.264 19 H -0.223 1.223 20 H -0.189 1.189 21 H -0.199 1.199 22 C -0.033 4.033 23 C 0.321 3.679 24 O -0.404 6.404 25 O -0.327 6.327 26 N -0.183 5.183 27 H 0.290 0.710 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.238 0.762 34 H 0.186 0.814 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.127 0.873 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 9.519 -9.052 12.457 18.103 hybrid contribution -1.407 1.070 -0.032 1.768 sum 8.112 -7.982 12.425 16.849 Atomic orbital electron populations 1.21692 0.93430 1.03589 1.01584 1.20470 0.96940 0.83217 1.06920 1.24850 0.88512 0.98471 0.84700 1.70214 1.26141 0.99619 1.27297 1.19538 0.99995 0.93832 0.97105 1.19069 0.98956 0.88269 0.94735 1.66397 1.19822 1.00025 1.32141 1.23242 0.95916 0.91974 0.90931 1.23444 0.97936 1.00941 0.98595 1.20104 0.97362 0.92432 0.96469 1.18885 0.84296 0.84283 0.83318 1.90624 1.36341 1.48633 1.70154 1.42820 1.23406 1.19527 1.29170 1.18261 1.26416 1.09009 1.01910 0.92257 1.25686 1.00402 0.93636 0.92278 1.70078 1.38034 0.98800 1.33223 0.86308 0.84167 0.78120 0.77795 1.22324 1.18877 1.19894 1.22181 0.90530 0.90079 1.00555 1.23357 0.83835 0.83302 0.77363 1.90651 1.20733 1.75331 1.53704 1.84444 1.43217 1.37917 1.67154 1.42648 1.40303 1.06922 1.28477 0.70986 0.88325 0.93113 0.94542 0.87071 0.85039 0.76207 0.81351 0.90931 0.84391 0.87257 0.72274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.85 71.98 0.71 -2.07 16 2 C -0.04 -0.60 6.56 29.85 0.20 -0.40 16 3 C 0.30 8.40 7.37 137.88 1.02 9.42 16 4 N -0.51 -21.21 10.65 -179.40 -1.91 -23.12 16 5 C 0.02 0.78 6.85 40.03 0.27 1.06 16 6 C 0.23 7.50 8.46 133.91 1.13 8.63 16 7 N -0.47 -13.90 10.35 -192.87 -2.00 -15.90 16 8 C 0.15 3.91 11.14 84.72 0.94 4.86 16 9 C -0.19 -6.52 7.73 22.64 0.17 -6.34 16 10 C -0.05 -2.28 5.74 -19.75 -0.11 -2.40 16 11 C 0.50 27.80 7.53 86.71 0.65 28.45 16 12 O -0.58 -36.67 16.27 -4.05 -0.07 -36.74 16 13 N -0.43 -22.92 2.21 -643.50 -1.42 -24.34 16 14 C -0.43 -25.60 8.37 84.13 0.70 -24.89 16 15 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 16 C 0.10 5.53 4.49 84.98 0.38 5.92 16 17 N -0.77 -40.64 9.27 21.69 0.20 -40.44 16 18 Si 0.91 46.20 29.69 68.60 2.04 48.24 16 19 H -0.30 -15.99 7.11 99.48 0.71 -15.29 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -14.17 7.11 99.48 0.71 -13.46 16 22 C 0.09 3.79 5.18 85.63 0.44 4.24 16 23 C 0.48 19.53 4.45 71.24 0.32 19.85 16 24 O -0.52 -25.69 13.82 21.97 0.30 -25.38 16 25 O -0.51 -15.09 13.42 -51.36 -0.69 -15.78 16 26 N -0.57 -13.67 6.23 -183.75 -1.14 -14.81 16 27 H 0.45 6.37 8.96 -92.71 -0.83 5.54 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.22 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.17 5.72 2.14 -3.04 -0.01 5.71 16 35 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 36 H 0.14 4.82 4.48 -2.39 -0.01 4.81 16 37 H 0.11 4.51 8.11 -2.39 -0.02 4.49 16 38 H 0.42 8.82 9.10 -74.06 -0.67 8.14 16 Total: -1.00 -89.15 324.89 1.81 -87.33 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.34 Total: 14.63 kcal Atomic # 6 Polarization: 39.48 SS G_CDS: 6.83 Total: 46.31 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.27 Total: -118.61 kcal Atomic # 8 Polarization: -77.45 SS G_CDS: -0.45 Total: -77.90 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.04 Total: 48.24 kcal Total: -89.15 1.81 -87.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605857610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.364 kcal (2) G-P(sol) polarization free energy of solvation -89.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds