Wall clock time and date at job start Tue Mar 31 2020 11:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99769 * 2 1 4 4 C 1.50700 * 109.47312 * 275.00332 * 3 2 1 5 5 H 1.08000 * 119.99681 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99790 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00238 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99579 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47076 * 90.00539 * 8 6 4 10 10 H 1.48503 * 109.46936 * 209.99804 * 8 6 4 11 11 H 1.48494 * 109.47469 * 330.00051 * 8 6 4 12 12 S 1.65596 * 119.99849 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40385 * 336.45653 * 12 2 1 14 14 O 1.42101 * 106.39967 * 203.53717 * 12 2 1 15 15 N 1.65595 * 107.22074 * 89.99821 * 12 2 1 16 16 C 1.50244 * 130.83934 * 269.96839 * 15 12 2 17 17 C 1.55845 * 101.04733 * 126.05138 * 16 15 12 18 18 C 1.54857 * 103.44686 * 32.94132 * 17 16 15 19 19 C 1.50247 * 130.83992 * 89.99764 * 15 12 2 20 20 C 1.50697 * 116.45390 * 359.97438 * 19 15 12 21 21 O 1.20833 * 119.99988 * 267.62958 * 20 19 15 22 22 O 1.34222 * 120.00018 * 87.63712 * 20 19 15 23 23 C 1.55842 * 101.05068 * 126.00989 * 19 15 12 24 24 C 1.54857 * 103.44509 * 32.93864 * 23 19 15 25 25 H 1.08996 * 109.46942 * 269.99300 * 1 2 3 26 26 H 1.08996 * 109.47392 * 29.99769 * 1 2 3 27 27 H 1.08999 * 109.47168 * 149.99740 * 1 2 3 28 28 H 1.08996 * 109.46552 * 35.00520 * 3 2 1 29 29 H 1.08998 * 109.46498 * 155.00315 * 3 2 1 30 30 H 0.97005 * 120.00154 * 180.02562 * 7 6 4 31 31 H 1.08993 * 116.45389 * 0.02562 * 16 15 12 32 32 H 1.08997 * 110.62893 * 274.45056 * 17 16 15 33 33 H 1.09004 * 110.62404 * 151.42897 * 17 16 15 34 34 H 1.09004 * 110.62191 * 118.48708 * 18 17 16 35 35 H 1.08996 * 110.62419 * 241.50608 * 18 17 16 36 36 H 0.96711 * 117.00042 * 179.97438 * 22 20 19 37 37 H 1.09001 * 110.62178 * 151.42482 * 23 19 15 38 38 H 1.08990 * 110.63203 * 274.45038 * 23 19 15 39 39 H 1.09008 * 110.62676 * 118.48720 * 24 23 19 40 40 H 1.08994 * 110.62854 * 241.50664 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9281 1.1940 -2.2331 6 6 3.0005 2.9505 -1.6663 7 7 3.5041 3.6465 -0.6706 8 14 3.1794 3.5662 -3.4209 9 1 2.0192 4.4272 -3.7640 10 1 4.4330 4.3528 -3.5440 11 1 3.2284 2.4083 -4.3493 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4067 0.5434 14 8 3.5759 -1.1570 0.5439 15 7 2.5381 -1.8580 -1.5825 16 6 1.6994 -2.6783 -2.5212 17 6 1.5519 -1.6984 -3.7239 18 6 2.8928 -0.9238 -3.7238 19 6 3.6678 -1.5412 -2.5209 20 6 4.7854 -0.6967 -1.9652 21 8 4.7542 0.5048 -2.0900 22 8 5.8154 -1.2791 -1.3317 23 6 4.0748 -2.9700 -2.9917 24 6 2.7339 -3.7446 -2.9918 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6501 2.0042 0.5895 29 1 3.1857 1.1177 0.4343 30 1 3.9676 4.4802 -0.8471 31 1 0.7664 -3.0734 -2.1194 32 1 0.7154 -1.0180 -3.5646 33 1 1.4273 -2.2501 -4.6557 34 1 3.4332 -1.0914 -4.6555 35 1 2.7213 0.1407 -3.5644 36 1 6.5087 -0.6962 -0.9926 37 1 4.4994 -2.9372 -3.9951 38 1 4.7778 -3.4196 -2.2906 39 1 2.4935 -4.0960 -3.9953 40 1 2.7720 -4.5783 -2.2908 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606105746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:17 Heat of formation + Delta-G solvation = -127.867361 kcal Electronic energy + Delta-G solvation = -28171.386985 eV Core-core repulsion = 24307.274371 eV Total energy + Delta-G solvation = -3864.112614 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57171 -38.73097 -36.64353 -35.50257 -35.34274 -35.21871 -32.30953 -30.42568 -30.33929 -29.90684 -27.69539 -25.01306 -23.55502 -22.23691 -22.10230 -21.28289 -19.48240 -18.49898 -17.63177 -17.03363 -16.74524 -16.26768 -15.80105 -15.52249 -14.87047 -14.73903 -14.36888 -14.20330 -13.78704 -13.39127 -13.12446 -12.94420 -12.58284 -12.33115 -12.23725 -12.07444 -11.71408 -11.69351 -11.52919 -11.32365 -11.17808 -11.14626 -11.07415 -11.02375 -10.78450 -10.70506 -10.64973 -10.44794 -10.05776 -9.85683 -9.77550 -9.52687 -9.03685 -8.29570 -7.98829 -5.93316 -3.95518 1.12832 2.66684 3.33555 3.38069 3.42618 3.44644 3.57940 4.10138 4.46918 4.53084 4.56017 4.68616 4.97853 5.05853 5.27989 5.36585 5.40283 5.45955 5.51295 5.58609 5.68643 5.73488 5.92605 5.98386 6.06653 6.16018 6.17216 6.26356 6.29786 6.41209 6.45385 6.62482 6.65027 7.16561 7.37293 7.51428 7.67968 8.01981 8.28902 8.55646 9.02764 9.70233 11.16340 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.008482 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.086723 B = 3300.470293 C = 3869.141926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.994 5.994 3 C 0.246 3.754 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.081 3.919 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.271 1.271 12 S 2.796 3.204 13 O -0.994 6.994 14 O -0.967 6.967 15 N -1.011 6.011 16 C 0.144 3.856 17 C -0.126 4.126 18 C -0.120 4.120 19 C 0.192 3.808 20 C 0.477 3.523 21 O -0.433 6.433 22 O -0.512 6.512 23 C -0.122 4.122 24 C -0.127 4.127 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.259 0.741 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -12.984 -6.782 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.837 5.837 3 C 0.124 3.876 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.121 4.121 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.216 1.216 10 H -0.216 1.216 11 H -0.196 1.196 12 S 2.806 3.194 13 O -0.979 6.979 14 O -0.951 6.951 15 N -0.850 5.850 16 C 0.039 3.961 17 C -0.165 4.165 18 C -0.159 4.159 19 C 0.103 3.897 20 C 0.313 3.687 21 O -0.313 6.313 22 O -0.324 6.324 23 C -0.161 4.161 24 C -0.166 4.166 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.267 0.733 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.886 -13.119 -5.956 14.531 hybrid contribution 0.474 1.201 -0.968 1.613 sum -1.412 -11.919 -6.924 13.856 Atomic orbital electron populations 1.21203 0.80163 1.02010 1.00552 1.57728 1.14215 1.23630 1.88105 1.19235 0.91750 0.78507 0.98086 1.21314 1.35912 1.06381 0.92069 0.92043 1.24713 0.94567 0.96434 0.96423 1.69923 1.37449 1.15188 1.30825 0.86613 0.76901 0.78519 0.85811 1.21551 1.21611 1.19623 1.01430 0.73294 0.72663 0.72018 1.93534 1.67440 1.60632 1.76256 1.93589 1.40663 1.85243 1.75632 1.61291 1.29740 1.65302 1.28696 1.23284 0.94166 0.90690 0.87976 1.22945 0.98068 0.98024 0.97471 1.23001 0.94916 1.03076 0.94927 1.21736 0.84626 0.94657 0.88723 1.22001 0.82639 0.87141 0.76927 1.90983 1.75267 1.14014 1.51036 1.84384 1.33388 1.45735 1.68935 1.22949 0.97880 0.93466 1.01799 1.22939 0.94598 0.97556 1.01536 0.93818 0.90700 0.93101 0.94753 0.93612 0.93085 0.86091 0.90615 0.90627 0.90848 0.87813 0.73292 0.90285 0.90113 0.90310 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.89 10.31 59.85 0.62 2.50 16 2 N -0.99 -21.28 3.23 -123.05 -0.40 -21.68 16 3 C 0.25 6.28 5.41 -5.19 -0.03 6.25 16 4 C -0.52 -13.55 7.43 -34.44 -0.26 -13.81 16 5 H 0.06 1.55 5.85 -52.49 -0.31 1.24 16 6 C 0.08 2.24 4.96 -17.82 -0.09 2.16 16 7 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 8 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 S 2.80 58.20 6.40 -107.50 -0.69 57.51 16 13 O -0.99 -21.01 17.07 -57.17 -0.98 -21.98 16 14 O -0.97 -22.97 14.72 -59.37 -0.87 -23.84 16 15 N -1.01 -17.50 3.42 -83.60 -0.29 -17.78 16 16 C 0.14 1.86 5.44 -62.80 -0.34 1.52 16 17 C -0.13 -1.54 6.44 -24.23 -0.16 -1.70 16 18 C -0.12 -1.86 5.90 -24.24 -0.14 -2.00 16 19 C 0.19 3.20 1.72 -127.84 -0.22 2.98 16 20 C 0.48 9.34 6.16 36.00 0.22 9.56 16 21 O -0.43 -10.11 14.65 -18.76 -0.27 -10.39 16 22 O -0.51 -8.73 12.53 -40.95 -0.51 -9.25 16 23 C -0.12 -1.53 5.95 -24.24 -0.14 -1.67 16 24 C -0.13 -1.36 6.44 -24.24 -0.16 -1.52 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 27 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 28 H 0.03 0.92 8.11 -51.93 -0.42 0.50 16 29 H 0.05 1.31 6.91 -51.93 -0.36 0.95 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.70 7.82 -51.93 -0.41 0.29 16 34 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16 35 H 0.10 2.01 5.75 -51.93 -0.30 1.71 16 36 H 0.41 5.61 9.10 45.56 0.41 6.02 16 37 H 0.08 0.82 7.82 -51.93 -0.41 0.41 16 38 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 39 H 0.08 0.63 7.82 -51.92 -0.41 0.23 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -34.74 333.81 -8.60 -43.34 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.65 Total: 3.59 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -0.69 Total: 4.27 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: 0.05 Total: -65.06 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -2.64 Total: -65.46 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.69 Total: 57.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.74 -8.60 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.528 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds