Wall clock time and date at job start Tue Mar 31 2020 11:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99769 * 2 1 4 4 C 1.50700 * 109.47312 * 275.00332 * 3 2 1 5 5 H 1.08000 * 119.99681 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99790 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00238 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99579 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47076 * 90.00539 * 8 6 4 10 10 H 1.48503 * 109.46936 * 209.99804 * 8 6 4 11 11 H 1.48494 * 109.47469 * 330.00051 * 8 6 4 12 12 S 1.65596 * 119.99849 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40385 * 336.45653 * 12 2 1 14 14 O 1.42101 * 106.39967 * 203.53717 * 12 2 1 15 15 N 1.65595 * 107.22074 * 89.99821 * 12 2 1 16 16 C 1.50244 * 130.83934 * 269.96839 * 15 12 2 17 17 C 1.55845 * 101.04733 * 126.05138 * 16 15 12 18 18 C 1.54857 * 103.44686 * 32.94132 * 17 16 15 19 19 C 1.50247 * 130.83992 * 89.99764 * 15 12 2 20 20 C 1.50697 * 116.45390 * 359.97438 * 19 15 12 21 21 O 1.20833 * 119.99988 * 267.62958 * 20 19 15 22 22 O 1.34222 * 120.00018 * 87.63712 * 20 19 15 23 23 C 1.55842 * 101.05068 * 126.00989 * 19 15 12 24 24 C 1.54857 * 103.44509 * 32.93864 * 23 19 15 25 25 H 1.08996 * 109.46942 * 269.99300 * 1 2 3 26 26 H 1.08996 * 109.47392 * 29.99769 * 1 2 3 27 27 H 1.08999 * 109.47168 * 149.99740 * 1 2 3 28 28 H 1.08996 * 109.46552 * 35.00520 * 3 2 1 29 29 H 1.08998 * 109.46498 * 155.00315 * 3 2 1 30 30 H 0.97005 * 120.00154 * 180.02562 * 7 6 4 31 31 H 1.08993 * 116.45389 * 0.02562 * 16 15 12 32 32 H 1.08997 * 110.62893 * 274.45056 * 17 16 15 33 33 H 1.09004 * 110.62404 * 151.42897 * 17 16 15 34 34 H 1.09004 * 110.62191 * 118.48708 * 18 17 16 35 35 H 1.08996 * 110.62419 * 241.50608 * 18 17 16 36 36 H 0.96711 * 117.00042 * 179.97438 * 22 20 19 37 37 H 1.09001 * 110.62178 * 151.42482 * 23 19 15 38 38 H 1.08990 * 110.63203 * 274.45038 * 23 19 15 39 39 H 1.09008 * 110.62676 * 118.48720 * 24 23 19 40 40 H 1.08994 * 110.62854 * 241.50664 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9281 1.1940 -2.2331 6 6 3.0005 2.9505 -1.6663 7 7 3.5041 3.6465 -0.6706 8 14 3.1794 3.5662 -3.4209 9 1 2.0192 4.4272 -3.7640 10 1 4.4330 4.3528 -3.5440 11 1 3.2284 2.4083 -4.3493 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4067 0.5434 14 8 3.5759 -1.1570 0.5439 15 7 2.5381 -1.8580 -1.5825 16 6 1.6994 -2.6783 -2.5212 17 6 1.5519 -1.6984 -3.7239 18 6 2.8928 -0.9238 -3.7238 19 6 3.6678 -1.5412 -2.5209 20 6 4.7854 -0.6967 -1.9652 21 8 4.7542 0.5048 -2.0900 22 8 5.8154 -1.2791 -1.3317 23 6 4.0748 -2.9700 -2.9917 24 6 2.7339 -3.7446 -2.9918 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6501 2.0042 0.5895 29 1 3.1857 1.1177 0.4343 30 1 3.9676 4.4802 -0.8471 31 1 0.7664 -3.0734 -2.1194 32 1 0.7154 -1.0180 -3.5646 33 1 1.4273 -2.2501 -4.6557 34 1 3.4332 -1.0914 -4.6555 35 1 2.7213 0.1407 -3.5644 36 1 6.5087 -0.6962 -0.9926 37 1 4.4994 -2.9372 -3.9951 38 1 4.7778 -3.4196 -2.2906 39 1 2.4935 -4.0960 -3.9953 40 1 2.7720 -4.5783 -2.2908 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606105746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:16 Heat of formation + Delta-G solvation = -155.117859 kcal Electronic energy + Delta-G solvation = -28172.568655 eV Core-core repulsion = 24307.274371 eV Total energy + Delta-G solvation = -3865.294284 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80486 -40.10006 -38.34284 -37.23573 -36.96854 -36.86431 -34.36071 -31.62419 -31.33100 -31.03216 -29.60602 -26.75141 -24.89208 -24.13472 -23.07405 -22.55630 -20.61316 -19.94717 -19.19922 -18.59177 -18.51347 -18.16963 -17.20232 -17.03842 -16.41539 -16.19363 -15.85512 -15.45724 -15.31097 -15.01625 -14.62697 -14.20694 -14.07220 -13.93977 -13.70244 -13.47495 -13.42709 -13.23289 -12.99913 -12.86903 -12.64906 -12.58849 -12.45599 -12.42727 -12.26299 -12.21105 -12.16714 -11.86360 -11.69530 -11.58503 -11.26312 -10.84704 -10.46181 -10.31047 -9.76154 -8.05959 -6.12292 -0.45453 1.18707 1.39230 1.44053 1.51662 1.97108 2.12448 2.51071 2.54849 3.09679 3.33188 3.46594 3.55507 3.89222 4.04351 4.11496 4.30189 4.33954 4.46669 4.53845 4.58556 4.63388 4.66695 4.77172 4.94721 5.03434 5.12167 5.15212 5.16013 5.27109 5.34462 5.37028 5.44308 5.47997 5.55447 5.77698 5.82705 5.95362 6.18613 6.92639 7.12311 7.57037 9.04270 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.008482 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.086723 B = 3300.470293 C = 3869.141926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.005 6.005 3 C 0.264 3.736 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.031 3.969 7 N -0.937 5.937 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.301 1.301 11 H -0.255 1.255 12 S 2.805 3.195 13 O -0.999 6.999 14 O -1.007 7.007 15 N -1.017 6.017 16 C 0.135 3.865 17 C -0.116 4.116 18 C -0.122 4.122 19 C 0.174 3.826 20 C 0.471 3.529 21 O -0.483 6.483 22 O -0.509 6.509 23 C -0.115 4.115 24 C -0.116 4.116 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.013 0.987 29 H 0.006 0.994 30 H 0.256 0.744 31 H 0.139 0.861 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.419 0.581 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 -15.734 -9.730 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.846 5.846 3 C 0.141 3.859 4 C -0.539 4.539 5 H 0.090 0.910 6 C -0.168 4.168 7 N -0.578 5.578 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.227 1.227 11 H -0.179 1.179 12 S 2.816 3.184 13 O -0.983 6.983 14 O -0.991 6.991 15 N -0.860 5.860 16 C 0.032 3.968 17 C -0.155 4.155 18 C -0.161 4.161 19 C 0.086 3.914 20 C 0.310 3.690 21 O -0.367 6.367 22 O -0.321 6.321 23 C -0.154 4.154 24 C -0.155 4.155 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.031 0.969 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.279 0.721 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.301 -15.916 -8.900 18.532 hybrid contribution 0.938 1.964 -0.019 2.176 sum -2.363 -13.953 -8.918 16.727 Atomic orbital electron populations 1.21445 0.77948 1.03467 1.01749 1.57665 1.15779 1.22269 1.88868 1.18706 0.90021 0.79848 0.97355 1.21502 1.34302 1.05683 0.92390 0.90950 1.25440 0.94627 0.97024 0.99677 1.70065 1.39143 1.15738 1.32873 0.85767 0.76484 0.78387 0.82200 1.20484 1.22744 1.17869 1.00844 0.72368 0.72319 0.72837 1.93517 1.67363 1.60302 1.77136 1.93533 1.42543 1.85687 1.77366 1.61066 1.31121 1.65627 1.28183 1.23787 0.95042 0.91018 0.86965 1.22977 0.95667 0.97661 0.99163 1.23030 0.96981 1.00687 0.95401 1.22102 0.83697 0.96974 0.88646 1.22818 0.83260 0.87088 0.75868 1.90950 1.76467 1.16177 1.53059 1.84372 1.33482 1.45878 1.68375 1.23008 0.99107 0.90379 1.02945 1.22987 0.92116 0.96408 1.04005 0.92849 0.90616 0.90215 0.96852 0.97602 0.93500 0.84381 0.91463 0.86157 0.88066 0.92302 0.72145 0.87318 0.91035 0.86093 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.39 10.31 127.77 1.32 4.71 16 2 N -1.00 -43.42 3.23 -543.23 -1.75 -45.17 16 3 C 0.26 14.05 5.41 85.63 0.46 14.51 16 4 C -0.50 -26.73 7.43 25.60 0.19 -26.54 16 5 H 0.07 3.66 5.85 -2.91 -0.02 3.64 16 6 C 0.03 1.73 4.96 84.65 0.42 2.15 16 7 N -0.94 -57.41 13.29 21.44 0.28 -57.12 16 8 Si 0.94 45.26 29.54 68.60 2.03 47.29 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 11 H -0.25 -11.40 7.11 99.48 0.71 -10.69 16 12 S 2.81 116.36 6.40 -56.49 -0.36 116.00 16 13 O -1.00 -40.97 17.07 -128.00 -2.19 -43.15 16 14 O -1.01 -49.38 14.72 -125.90 -1.85 -51.23 16 15 N -1.02 -33.31 3.42 -418.39 -1.43 -34.74 16 16 C 0.14 2.90 5.44 46.23 0.25 3.15 16 17 C -0.12 -2.30 6.44 32.21 0.21 -2.09 16 18 C -0.12 -3.40 5.90 32.21 0.19 -3.21 16 19 C 0.17 5.48 1.72 4.09 0.01 5.49 16 20 C 0.47 18.59 6.16 71.24 0.44 19.03 16 21 O -0.48 -23.24 14.65 21.94 0.32 -22.92 16 22 O -0.51 -17.60 12.53 -49.70 -0.62 -18.22 16 23 C -0.12 -2.45 5.95 32.21 0.19 -2.25 16 24 C -0.12 -1.85 6.44 32.21 0.21 -1.64 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 27 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 28 H 0.01 0.76 8.11 -2.39 -0.02 0.74 16 29 H 0.01 0.36 6.91 -2.39 -0.02 0.35 16 30 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 31 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.12 1.37 7.82 -2.38 -0.02 1.36 16 34 H 0.10 2.20 7.82 -2.39 -0.02 2.18 16 35 H 0.06 2.20 5.75 -2.39 -0.01 2.19 16 36 H 0.42 12.05 9.10 -74.05 -0.67 11.37 16 37 H 0.11 1.67 7.82 -2.39 -0.02 1.66 16 38 H 0.07 1.66 7.75 -2.39 -0.02 1.64 16 39 H 0.12 1.01 7.82 -2.38 -0.02 0.99 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -79.58 333.81 -1.29 -80.86 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.40 Total: 15.10 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 3.89 Total: 13.30 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -2.90 Total: -137.03 kcal Atomic # 8 Polarization: -131.18 SS G_CDS: -4.34 Total: -135.52 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 116.36 SS G_CDS: -0.36 Total: 116.00 kcal Total: -79.58 -1.29 -80.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.256 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds