Wall clock time and date at job start Tue Mar 31 2020 12:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00139 * 2 1 4 4 H 1.48500 * 109.46931 * 270.00653 * 3 2 1 5 5 H 1.48504 * 109.46662 * 30.00625 * 3 2 1 6 6 H 1.48501 * 109.47011 * 150.00383 * 3 2 1 7 7 C 1.37881 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46821 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47069 * 180.02562 * 10 9 7 12 12 C 1.34225 * 116.99883 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00288 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99956 * 179.97438 * 12 11 10 15 15 O 1.42900 * 109.47178 * 179.97438 * 14 12 11 16 16 C 1.35836 * 117.00026 * 179.97438 * 15 14 12 17 17 C 1.38594 * 120.11660 * 0.02562 * 16 15 14 18 18 C 1.38175 * 120.06138 * 179.97438 * 17 16 15 19 19 C 1.38383 * 120.29408 * 0.02562 * 18 17 16 20 20 C 1.38019 * 120.23712 * 0.02562 * 19 18 17 21 21 C 1.39265 * 119.93161 * 359.97438 * 20 19 18 22 22 C 1.48396 * 120.14254 * 180.02562 * 21 20 19 23 23 N 1.34074 * 126.67760 * 179.66764 * 22 21 20 24 24 N 1.28978 * 107.26828 * 179.83234 * 23 22 21 25 25 N 1.28737 * 108.94979 * 0.43721 * 24 23 22 26 26 H 0.96996 * 125.33736 * 179.76033 * 25 24 23 27 27 N 1.28871 * 109.32325 * 359.71675 * 25 24 23 28 28 H 0.97006 * 119.99779 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46948 * 60.00305 * 9 7 2 30 30 H 1.08995 * 109.47166 * 299.99877 * 9 7 2 31 31 H 1.08998 * 109.47048 * 59.99644 * 10 9 7 32 32 H 1.08995 * 109.47034 * 299.99816 * 10 9 7 33 33 H 1.09006 * 109.46917 * 59.99822 * 14 12 11 34 34 H 1.08998 * 109.47257 * 299.99820 * 14 12 11 35 35 H 1.08005 * 119.97220 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.85448 * 179.74110 * 18 17 16 37 37 H 1.08005 * 119.88522 * 180.02562 * 19 18 17 38 38 H 1.08003 * 120.03178 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2502 -6.0452 -0.0007 13 8 3.4569 -5.9821 -0.0003 14 6 1.5661 -7.3880 -0.0007 15 8 2.5502 -8.4241 -0.0008 16 6 2.0974 -9.7048 -0.0002 17 6 0.7353 -9.9608 -0.0002 18 6 0.2760 -11.2640 -0.0002 19 6 1.1709 -12.3195 0.0003 20 6 2.5299 -12.0786 0.0013 21 6 3.0034 -10.7690 0.0013 22 6 4.4636 -10.5046 0.0019 23 7 5.0601 -9.3038 -0.0043 24 7 6.3334 -9.5088 0.0023 25 7 6.5527 -10.7774 0.0030 26 1 7.4279 -11.1954 0.0041 27 7 5.4270 -11.4047 0.0028 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8904 30 1 0.6247 -2.5570 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 0.9435 -7.4786 -0.8909 34 1 0.9430 -7.4784 0.8891 35 1 0.0322 -9.1410 -0.0002 36 1 -0.7861 -11.4596 0.0041 37 1 0.8046 -13.3356 -0.0001 38 1 3.2253 -12.9050 0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606347813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:55 Heat of formation + Delta-G solvation = 30.366086 kcal Electronic energy + Delta-G solvation = -24982.780759 eV Core-core repulsion = 21022.378462 eV Total energy + Delta-G solvation = -3960.402297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.47592 -40.66687 -39.70019 -37.71613 -35.95764 -34.47564 -33.73846 -33.35071 -30.98362 -30.78200 -30.24200 -28.52693 -25.11296 -24.85738 -24.47817 -22.64165 -21.91351 -21.14677 -20.44795 -19.46773 -18.43539 -17.23778 -17.20263 -16.73992 -16.71496 -16.39806 -15.97019 -15.36940 -15.26951 -14.82236 -14.47265 -14.39836 -13.86391 -13.53812 -13.34836 -12.81640 -12.53391 -12.35756 -12.26540 -11.92454 -11.51791 -11.41745 -11.38986 -11.16492 -11.11349 -11.06564 -11.03402 -10.74350 -10.67340 -10.13561 -9.64389 -9.61170 -9.29486 -9.19112 -8.46849 -8.43968 -6.10271 -4.14399 0.46171 1.03745 1.14675 2.13900 2.24135 2.28835 2.53747 3.29610 3.35400 3.39448 3.45476 3.54997 3.60518 4.06213 4.39011 4.48602 4.61382 4.73968 4.91948 4.92081 5.02427 5.09747 5.18265 5.24534 5.26562 5.42854 5.54471 5.87007 5.96911 6.09929 6.10303 6.10581 6.28290 6.33427 6.63606 6.95312 7.01881 7.56202 7.62007 7.87218 8.14407 8.18473 8.26134 8.91175 9.50060 11.01262 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.002433 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.801806 B =11503.443513 C =12934.494676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.078 3.922 11 O -0.356 6.356 12 C 0.453 3.547 13 O -0.480 6.480 14 C 0.063 3.937 15 O -0.266 6.266 16 C 0.173 3.827 17 C -0.214 4.214 18 C -0.056 4.056 19 C -0.163 4.163 20 C -0.042 4.042 21 C -0.052 4.052 22 C 0.218 3.782 23 N -0.228 5.228 24 N -0.052 5.052 25 N -0.235 5.235 26 H 0.472 0.528 27 N -0.304 5.304 28 H 0.263 0.737 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 -29.127 0.015 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.006 3.994 11 O -0.273 6.273 12 C 0.293 3.707 13 O -0.366 6.366 14 C -0.014 4.014 15 O -0.176 6.176 16 C 0.124 3.876 17 C -0.233 4.233 18 C -0.075 4.075 19 C -0.181 4.181 20 C -0.062 4.062 21 C -0.056 4.056 22 C -0.061 4.061 23 N -0.101 5.101 24 N -0.047 5.047 25 N -0.080 5.080 26 H 0.326 0.674 27 N -0.156 5.156 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.363 -28.429 0.017 28.762 hybrid contribution 0.524 0.464 -0.008 0.700 sum 4.887 -27.965 0.008 28.389 Atomic orbital electron populations 1.69972 1.06095 1.26996 1.49841 1.24980 0.94918 0.99389 0.94851 0.86468 0.79791 0.82782 0.78259 1.20467 1.21055 1.19690 1.20984 0.93238 0.90062 1.52142 0.92192 1.19182 0.94191 0.88934 0.98913 1.23706 0.96413 0.78086 1.01245 1.86468 1.42296 1.15420 1.83124 1.22620 0.86712 0.86564 0.74786 1.90738 1.15078 1.87738 1.43051 1.22024 0.90316 0.83790 1.05226 1.86337 1.33197 1.11075 1.87028 1.18902 0.91847 0.83616 0.93221 1.21306 0.93482 0.99054 1.09464 1.21144 1.00258 0.91657 0.94408 1.21000 0.92442 0.99658 1.05050 1.21005 0.96152 0.94144 0.94874 1.16500 0.84506 0.92171 1.12393 1.23440 0.95114 0.85467 1.02077 1.76533 0.96389 1.21762 1.15454 1.79078 1.12348 0.98676 1.14640 1.47753 1.09443 1.04130 1.46689 0.67399 1.74816 0.92005 1.25756 1.23041 0.92708 0.95296 0.95294 0.92083 0.92098 0.87665 0.87661 0.84139 0.84991 0.85048 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.74 5.40 37.16 0.20 1.94 16 11 O -0.36 -7.00 10.22 -39.24 -0.40 -7.40 16 12 C 0.45 8.06 8.03 36.01 0.29 8.35 16 13 O -0.48 -10.26 16.25 -25.48 -0.41 -10.67 16 14 C 0.06 0.78 5.33 36.01 0.19 0.97 16 15 O -0.27 -3.81 8.02 -39.18 -0.31 -4.12 16 16 C 0.17 2.02 6.69 -38.88 -0.26 1.76 16 17 C -0.21 -1.82 9.03 -39.47 -0.36 -2.18 16 18 C -0.06 -0.37 10.03 -39.55 -0.40 -0.77 16 19 C -0.16 -1.08 10.03 -39.61 -0.40 -1.48 16 20 C -0.04 -0.35 9.70 -39.28 -0.38 -0.73 16 21 C -0.05 -0.59 5.89 -104.76 -0.62 -1.21 16 22 C 0.22 2.89 7.91 -156.29 -1.24 1.65 16 23 N -0.23 -3.62 11.06 32.15 0.36 -3.27 16 24 N -0.05 -0.69 13.47 60.35 0.81 0.12 16 25 N -0.24 -2.15 7.90 60.35 0.48 -1.67 16 26 H 0.47 1.83 8.96 -340.37 -3.05 -1.22 16 27 N -0.30 -3.27 12.08 32.16 0.39 -2.88 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 32 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 33 H 0.11 1.01 7.66 -51.93 -0.40 0.61 16 34 H 0.11 1.01 7.66 -51.93 -0.40 0.61 16 35 H 0.14 0.92 6.30 -52.48 -0.33 0.59 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.14 0.95 7.88 -52.48 -0.41 0.54 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -36.48 344.30 -8.38 -44.86 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -6.67 Total: -6.30 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.52 Total: -4.73 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 2.77 Total: -33.32 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.13 Total: -22.19 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.48 -8.38 -44.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.225 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds