Wall clock time and date at job start Tue Mar 31 2020 12:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00139 * 2 1 4 4 H 1.48500 * 109.46931 * 270.00653 * 3 2 1 5 5 H 1.48504 * 109.46662 * 30.00625 * 3 2 1 6 6 H 1.48501 * 109.47011 * 150.00383 * 3 2 1 7 7 C 1.37881 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46821 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47069 * 180.02562 * 10 9 7 12 12 C 1.34225 * 116.99883 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00288 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99956 * 179.97438 * 12 11 10 15 15 O 1.42900 * 109.47178 * 179.97438 * 14 12 11 16 16 C 1.35836 * 117.00026 * 179.97438 * 15 14 12 17 17 C 1.38594 * 120.11660 * 0.02562 * 16 15 14 18 18 C 1.38175 * 120.06138 * 179.97438 * 17 16 15 19 19 C 1.38383 * 120.29408 * 0.02562 * 18 17 16 20 20 C 1.38019 * 120.23712 * 0.02562 * 19 18 17 21 21 C 1.39265 * 119.93161 * 359.97438 * 20 19 18 22 22 C 1.48396 * 120.14254 * 180.02562 * 21 20 19 23 23 N 1.34074 * 126.67760 * 179.66764 * 22 21 20 24 24 N 1.28978 * 107.26828 * 179.83234 * 23 22 21 25 25 N 1.28737 * 108.94979 * 0.43721 * 24 23 22 26 26 H 0.96996 * 125.33736 * 179.76033 * 25 24 23 27 27 N 1.28871 * 109.32325 * 359.71675 * 25 24 23 28 28 H 0.97006 * 119.99779 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46948 * 60.00305 * 9 7 2 30 30 H 1.08995 * 109.47166 * 299.99877 * 9 7 2 31 31 H 1.08998 * 109.47048 * 59.99644 * 10 9 7 32 32 H 1.08995 * 109.47034 * 299.99816 * 10 9 7 33 33 H 1.09006 * 109.46917 * 59.99822 * 14 12 11 34 34 H 1.08998 * 109.47257 * 299.99820 * 14 12 11 35 35 H 1.08005 * 119.97220 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.85448 * 179.74110 * 18 17 16 37 37 H 1.08005 * 119.88522 * 180.02562 * 19 18 17 38 38 H 1.08003 * 120.03178 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2502 -6.0452 -0.0007 13 8 3.4569 -5.9821 -0.0003 14 6 1.5661 -7.3880 -0.0007 15 8 2.5502 -8.4241 -0.0008 16 6 2.0974 -9.7048 -0.0002 17 6 0.7353 -9.9608 -0.0002 18 6 0.2760 -11.2640 -0.0002 19 6 1.1709 -12.3195 0.0003 20 6 2.5299 -12.0786 0.0013 21 6 3.0034 -10.7690 0.0013 22 6 4.4636 -10.5046 0.0019 23 7 5.0601 -9.3038 -0.0043 24 7 6.3334 -9.5088 0.0023 25 7 6.5527 -10.7774 0.0030 26 1 7.4279 -11.1954 0.0041 27 7 5.4270 -11.4047 0.0028 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8904 30 1 0.6247 -2.5570 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 0.9435 -7.4786 -0.8909 34 1 0.9430 -7.4784 0.8891 35 1 0.0322 -9.1410 -0.0002 36 1 -0.7861 -11.4596 0.0041 37 1 0.8046 -13.3356 -0.0001 38 1 3.2253 -12.9050 0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606347813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:54 Heat of formation + Delta-G solvation = 6.012435 kcal Electronic energy + Delta-G solvation = -24983.836813 eV Core-core repulsion = 21022.378462 eV Total energy + Delta-G solvation = -3961.458350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.37921 -41.72629 -40.90800 -38.56956 -37.52703 -35.45648 -35.36655 -34.58254 -32.51758 -31.63574 -31.30640 -29.60683 -26.95155 -25.80405 -25.35596 -23.70600 -22.85278 -22.66730 -21.84128 -20.32345 -19.33098 -18.77681 -18.12664 -18.05764 -17.96483 -17.72464 -17.16591 -16.64284 -16.56801 -16.17968 -15.43539 -15.18596 -15.02945 -14.67390 -14.54526 -14.36770 -13.84556 -13.72363 -13.17936 -13.13307 -13.00786 -12.61111 -12.58622 -12.51753 -12.33242 -12.24858 -12.17304 -11.96427 -11.89733 -11.79396 -11.51190 -11.48932 -11.29273 -10.60969 -9.82411 -9.18099 -8.27285 -6.40000 -0.25083 0.24306 0.42872 1.12214 1.12389 1.38992 1.41854 1.42776 1.48056 1.54606 2.36425 2.54460 2.74583 2.82295 3.07234 3.23496 3.54524 3.89177 4.01441 4.04151 4.05378 4.22464 4.26135 4.32340 4.36425 4.49622 4.52699 4.58049 4.68938 4.96625 5.23407 5.25865 5.41794 5.47450 5.51341 5.53945 5.66104 5.74048 5.77612 6.06803 6.26154 6.70386 6.74629 7.21862 7.29539 8.85267 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.002433 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.801806 B =11503.443513 C =12934.494676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.092 3.908 11 O -0.357 6.357 12 C 0.451 3.549 13 O -0.521 6.521 14 C 0.071 3.929 15 O -0.299 6.299 16 C 0.146 3.854 17 C -0.214 4.214 18 C -0.049 4.049 19 C -0.153 4.153 20 C -0.043 4.043 21 C -0.080 4.080 22 C 0.208 3.792 23 N -0.279 5.279 24 N -0.075 5.075 25 N -0.204 5.204 26 H 0.492 0.508 27 N -0.295 5.295 28 H 0.268 0.732 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -31.017 0.007 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.005 4.005 10 C 0.019 3.981 11 O -0.274 6.274 12 C 0.294 3.706 13 O -0.409 6.409 14 C -0.004 4.004 15 O -0.211 6.211 16 C 0.098 3.902 17 C -0.233 4.233 18 C -0.068 4.068 19 C -0.171 4.171 20 C -0.063 4.063 21 C -0.084 4.084 22 C -0.071 4.071 23 N -0.151 5.151 24 N -0.070 5.070 25 N -0.055 5.055 26 H 0.351 0.649 27 N -0.148 5.148 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.182 0.818 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.430 -30.348 0.007 30.542 hybrid contribution 0.795 0.827 -0.006 1.147 sum 4.225 -29.522 0.002 29.823 Atomic orbital electron populations 1.70082 1.07696 1.28295 1.50345 1.25925 0.95852 1.03264 0.94066 0.85350 0.78522 0.77912 0.78686 1.19528 1.20215 1.18968 1.21372 0.93652 0.91350 1.52573 0.91950 1.18981 0.94268 0.90235 0.96998 1.23195 0.95163 0.78736 1.00975 1.86450 1.42144 1.15315 1.83490 1.23737 0.86476 0.87536 0.72869 1.90723 1.17041 1.88171 1.44989 1.22158 0.89558 0.80406 1.08276 1.86279 1.34428 1.12394 1.88044 1.19179 0.93310 0.82390 0.95297 1.21592 0.92257 1.00730 1.08691 1.21594 1.02035 0.90732 0.92393 1.21428 0.91494 1.01363 1.02795 1.21228 0.97462 0.93112 0.94524 1.16865 0.83732 0.93555 1.14283 1.23898 0.96406 0.84960 1.01869 1.76498 0.97312 1.23673 1.17617 1.78982 1.11992 1.00169 1.15844 1.47803 1.10225 1.03243 1.44189 0.64934 1.74786 0.91971 1.25178 1.22892 0.92271 0.97142 0.97142 0.92348 0.92342 0.84367 0.84360 0.82233 0.81628 0.81827 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.74 5.35 29.85 0.16 1.90 16 10 C 0.09 4.26 5.40 71.98 0.39 4.65 16 11 O -0.36 -14.22 10.22 -51.37 -0.53 -14.74 16 12 C 0.45 16.23 8.03 71.24 0.57 16.81 16 13 O -0.52 -23.09 16.25 28.39 0.46 -22.63 16 14 C 0.07 1.70 5.33 71.24 0.38 2.08 16 15 O -0.30 -8.61 8.02 -72.63 -0.58 -9.19 16 16 C 0.15 3.28 6.69 22.72 0.15 3.43 16 17 C -0.21 -3.05 9.03 22.34 0.20 -2.85 16 18 C -0.05 -0.46 10.03 22.29 0.22 -0.24 16 19 C -0.15 -1.46 10.03 22.25 0.22 -1.23 16 20 C -0.04 -0.64 9.70 22.46 0.22 -0.42 16 21 C -0.08 -1.80 5.89 -19.96 -0.12 -1.92 16 22 C 0.21 5.59 7.91 137.34 1.09 6.68 16 23 N -0.28 -9.25 11.06 -52.20 -0.58 -9.82 16 24 N -0.07 -2.07 13.47 37.02 0.50 -1.57 16 25 N -0.20 -3.71 7.90 37.02 0.29 -3.42 16 26 H 0.49 3.47 8.96 -347.54 -3.12 0.36 16 27 N -0.29 -6.27 12.08 -52.15 -0.63 -6.90 16 28 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 32 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 33 H 0.14 2.34 7.66 -2.38 -0.02 2.32 16 34 H 0.14 2.34 7.66 -2.39 -0.02 2.32 16 35 H 0.16 1.53 6.30 -2.91 -0.02 1.51 16 36 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 37 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 38 H 0.15 1.75 7.88 -2.91 -0.02 1.73 16 Total: -1.00 -82.51 344.30 3.44 -79.07 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -1.99 Total: -0.22 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 4.18 Total: -1.63 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -0.13 Total: -76.75 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.65 Total: -46.56 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -82.51 3.44 -79.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.083 kcal (2) G-P(sol) polarization free energy of solvation -82.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds