Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46741 * 188.13241 * 3 2 1 5 5 N 1.46900 * 109.46853 * 179.73680 * 4 3 2 6 6 C 1.46902 * 110.99941 * 297.01140 * 5 4 3 7 7 C 1.50696 * 109.47172 * 288.59397 * 6 5 4 8 8 H 1.07997 * 120.00121 * 0.88502 * 7 6 5 9 9 C 1.37884 * 120.00071 * 180.88987 * 7 6 5 10 10 N 1.31505 * 119.99984 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99510 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47121 * 90.00218 * 11 9 7 13 13 H 1.48502 * 109.47135 * 209.99722 * 11 9 7 14 14 H 1.48499 * 109.47605 * 330.00146 * 11 9 7 15 15 C 1.46897 * 111.00207 * 60.96866 * 5 4 3 16 16 C 1.50699 * 109.46981 * 66.04546 * 15 5 4 17 17 C 1.33063 * 125.03898 * 89.72326 * 16 15 5 18 18 C 1.39354 * 114.91582 * 179.79194 * 17 16 15 19 19 C 1.48424 * 122.76472 * 180.23122 * 18 17 16 20 20 N 1.33690 * 126.31138 * 359.97438 * 19 18 17 21 21 N 1.28569 * 109.85276 * 179.85443 * 20 19 18 22 22 N 1.28916 * 109.71923 * 0.41814 * 21 20 19 23 23 H 0.97005 * 126.42557 * 179.76575 * 22 21 20 24 24 N 1.31998 * 126.30900 * 180.30936 * 19 18 17 25 25 C 1.34533 * 114.46858 * 0.49635 * 18 17 16 26 26 S 1.75818 * 125.03987 * 270.02158 * 16 15 5 27 27 H 1.09001 * 109.46996 * 68.13682 * 3 2 1 28 28 H 1.08993 * 109.47510 * 308.12992 * 3 2 1 29 29 H 1.08993 * 109.46852 * 59.73412 * 4 3 2 30 30 H 1.09000 * 109.46963 * 299.73742 * 4 3 2 31 31 H 1.09002 * 109.46959 * 48.59033 * 6 5 4 32 32 H 1.09002 * 109.46776 * 168.58884 * 6 5 4 33 33 H 0.97003 * 119.99913 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.46992 * 306.04254 * 15 5 4 35 35 H 1.08995 * 109.47070 * 186.04148 * 15 5 4 36 36 H 1.08001 * 122.54399 * 359.97438 * 17 16 15 37 37 H 1.08001 * 125.22499 * 179.75941 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.4290 0.2041 5 7 4.5863 1.4288 0.2104 6 6 5.1078 0.6409 1.3353 7 6 4.8595 1.3807 2.6245 8 1 4.3511 2.3334 2.6111 9 6 5.2814 0.8412 3.8212 10 7 5.0651 1.4870 4.9462 11 14 6.1602 -0.8070 3.8443 12 1 7.6233 -0.5897 3.7116 13 1 5.8772 -1.5009 5.1264 14 1 5.6790 -1.6406 2.7135 15 6 5.1182 0.9375 -1.0678 16 6 4.7646 1.9079 -2.1652 17 6 5.5116 2.9435 -2.5393 18 6 4.9836 3.7020 -3.5823 19 6 5.6739 4.8918 -4.1398 20 7 6.8497 5.3852 -3.7384 21 7 7.1516 6.4195 -4.4399 22 7 6.2175 6.6510 -5.2978 23 1 6.1961 7.3731 -5.9452 24 7 5.2370 5.6613 -5.1192 25 6 3.7939 3.2702 -4.0385 26 16 3.3002 1.8438 -3.1361 27 1 2.9716 -0.3819 -0.9538 28 1 2.9717 -0.6336 0.8083 29 1 2.7499 1.8132 1.1556 30 1 2.7575 2.0623 -0.6068 31 1 4.6031 -0.3247 1.3675 32 1 6.1791 0.4869 1.2052 33 1 5.3617 1.1073 5.7881 34 1 4.6848 -0.0373 -1.2910 35 1 6.2022 0.8461 -0.9991 36 1 6.4570 3.1768 -2.0721 37 1 3.2290 3.7288 -4.8366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = 175.887802 kcal Electronic energy + Delta-G solvation = -22935.074829 eV Core-core repulsion = 19456.028450 eV Total energy + Delta-G solvation = -3479.046379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.24097 -39.83553 -38.69946 -37.31547 -34.75578 -34.41950 -33.99764 -32.22193 -31.50831 -29.03604 -26.96851 -26.23033 -24.95288 -24.85059 -22.53114 -21.34142 -20.36858 -19.73072 -19.04697 -18.51009 -17.68741 -17.58380 -16.90407 -16.70600 -16.26218 -15.73314 -15.54163 -15.19597 -14.92585 -14.51012 -14.22138 -14.12571 -14.02408 -13.71894 -13.56222 -13.27287 -13.16527 -13.04238 -12.90535 -12.59446 -12.33949 -12.19398 -11.99896 -11.93347 -11.88493 -11.83696 -11.73041 -11.47406 -11.36706 -10.64591 -9.64839 -9.29765 -8.89275 -8.14634 -6.17187 -0.41436 0.04537 0.57155 0.86526 0.92372 1.24733 1.47976 1.48678 1.57901 1.77673 1.82070 2.06223 2.46574 2.77522 2.98477 3.21322 3.24417 3.47144 3.86870 4.10674 4.13682 4.17245 4.26392 4.37245 4.48091 4.54137 4.57940 4.73205 4.86206 5.09449 5.16359 5.18853 5.28097 5.31941 5.44995 5.68442 5.69346 6.06030 6.35995 6.61743 6.72842 6.91877 7.05661 7.45928 9.02312 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.012826 B = 0.003660 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.543800 B = 7647.790076 C = 9191.479710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.242 3.758 3 C -0.066 4.066 4 C 0.068 3.932 5 N -0.529 5.529 6 C 0.163 3.837 7 C -0.506 4.506 8 H 0.034 0.966 9 C 0.004 3.996 10 N -0.956 5.956 11 Si 0.941 3.059 12 H -0.271 1.271 13 H -0.296 1.296 14 H -0.228 1.228 15 C 0.111 3.889 16 C -0.168 4.168 17 C -0.101 4.101 18 C -0.050 4.050 19 C 0.264 3.736 20 N -0.321 5.321 21 N 0.004 4.996 22 N -0.272 5.272 23 H 0.488 0.512 24 N -0.297 5.297 25 C -0.167 4.167 26 S 0.170 5.830 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 1.391 -24.634 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.075 4.075 3 C -0.108 4.108 4 C -0.063 4.063 5 N -0.251 5.251 6 C 0.037 3.963 7 C -0.545 4.545 8 H 0.052 0.948 9 C -0.193 4.193 10 N -0.597 5.597 11 Si 0.764 3.236 12 H -0.196 1.196 13 H -0.223 1.223 14 H -0.151 1.151 15 C -0.018 4.018 16 C -0.286 4.286 17 C -0.131 4.131 18 C -0.067 4.067 19 C -0.019 4.019 20 N -0.199 5.199 21 N 0.008 4.992 22 N -0.124 5.124 23 H 0.347 0.653 24 N -0.142 5.142 25 C -0.307 4.307 26 S 0.436 5.564 27 H 0.152 0.848 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.162 0.838 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.845 1.334 -24.529 24.580 hybrid contribution 1.401 0.321 0.421 1.498 sum 0.557 1.656 -24.108 24.172 Atomic orbital electron populations 1.81187 1.14231 1.10418 1.10947 1.29278 0.95194 0.91636 0.91389 1.20238 0.80895 1.02702 1.06957 1.22081 0.88131 0.93265 1.02806 1.62047 1.05983 1.55013 1.02049 1.20129 0.95943 0.92207 0.88050 1.21286 1.36497 1.05853 0.90862 0.94788 1.25857 0.96885 1.01541 0.94996 1.70077 1.49580 1.41203 0.98879 0.85815 0.79346 0.79895 0.78501 1.19604 1.22271 1.15106 1.20815 1.01957 0.93777 0.85262 1.24267 0.98639 1.02595 1.03068 1.19896 1.02491 0.94172 0.96571 1.16273 0.95709 0.94332 1.00425 1.23339 0.90744 0.95916 0.91943 1.75537 1.15124 1.06099 1.23093 1.78316 1.13273 1.09635 0.97996 1.51022 1.10332 1.23694 1.27323 0.65253 1.78792 1.13155 1.02095 1.20146 1.26061 0.98550 1.01103 1.04999 1.84214 1.19985 1.24743 1.27502 0.84834 0.86267 0.91942 0.89757 0.96281 0.94344 0.92907 0.90764 0.87957 0.83839 0.79251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.17 18.54 20.01 0.37 -15.80 16 2 C 0.24 6.78 15.43 89.44 1.38 8.16 16 3 C -0.07 -1.57 5.06 28.79 0.15 -1.43 16 4 C 0.07 2.02 4.91 86.31 0.42 2.45 16 5 N -0.53 -17.13 4.65 -905.38 -4.21 -21.34 16 6 C 0.16 6.30 3.66 85.56 0.31 6.61 16 7 C -0.51 -26.42 9.11 25.60 0.23 -26.19 16 8 H 0.03 2.05 7.70 -2.91 -0.02 2.03 16 9 C 0.00 0.19 5.47 84.66 0.46 0.66 16 10 N -0.96 -58.09 13.96 21.45 0.30 -57.79 16 11 Si 0.94 40.05 27.45 68.60 1.88 41.93 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.30 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.23 -8.25 6.57 99.48 0.65 -7.59 16 15 C 0.11 2.59 5.21 85.56 0.45 3.04 16 16 C -0.17 -3.76 5.23 24.53 0.13 -3.63 16 17 C -0.10 -2.47 9.80 21.38 0.21 -2.26 16 18 C -0.05 -1.16 5.79 -21.14 -0.12 -1.28 16 19 C 0.26 6.39 8.01 137.41 1.10 7.49 16 20 N -0.32 -8.48 12.24 -52.28 -0.64 -9.12 16 21 N 0.00 0.08 13.42 37.02 0.50 0.58 16 22 N -0.27 -4.08 8.44 37.02 0.31 -3.77 16 23 H 0.49 2.33 8.96 -340.35 -3.05 -0.72 16 24 N -0.30 -5.99 12.79 -52.24 -0.67 -6.66 16 25 C -0.17 -3.11 10.95 66.97 0.73 -2.38 16 26 S 0.17 3.06 21.84 -56.49 -1.23 1.83 16 27 H 0.13 2.21 6.31 -2.39 -0.02 2.20 16 28 H 0.12 2.95 6.23 -2.39 -0.01 2.94 16 29 H 0.06 2.35 7.16 -2.39 -0.02 2.33 16 30 H 0.08 2.27 6.01 -2.39 -0.01 2.26 16 31 H 0.02 0.68 5.01 -2.39 -0.01 0.67 16 32 H 0.04 1.45 7.20 -2.39 -0.02 1.43 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.07 1.32 6.03 -2.39 -0.01 1.30 16 35 H 0.10 2.31 7.87 -2.39 -0.02 2.30 16 36 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -72.00 335.66 0.12 -71.88 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -1.95 Total: 7.03 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.45 Total: -8.78 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.04 Total: -113.90 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.88 Total: 41.93 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.23 Total: 1.83 kcal Total: -72.00 0.12 -71.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.768 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds