Wall clock time and date at job start Tue Mar 31 2020 11:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99582 * 2 1 4 4 O 1.20827 * 120.00336 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99901 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46996 * 179.97438 * 5 3 2 7 7 C 1.36932 * 120.00198 * 270.00003 * 6 5 3 8 8 H 1.08004 * 119.99986 * 185.74496 * 7 6 5 9 9 C 1.38813 * 120.00055 * 5.74298 * 7 6 5 10 10 N 1.31616 * 119.99831 * 25.56980 * 9 7 6 11 11 Si 1.86802 * 119.99886 * 205.56491 * 9 7 6 12 12 H 1.48496 * 109.47238 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46881 * 120.00580 * 11 9 7 14 14 H 1.48501 * 109.47130 * 240.00055 * 11 9 7 15 15 C 1.46505 * 119.99671 * 90.00695 * 6 5 3 16 16 C 1.50699 * 109.47426 * 88.37738 * 15 6 5 17 17 C 1.38162 * 120.00240 * 265.27291 * 16 15 6 18 18 C 1.38401 * 120.43213 * 180.28204 * 17 16 15 19 19 C 1.38148 * 120.43719 * 359.69080 * 18 17 16 20 20 C 1.39321 * 119.99614 * 0.03262 * 19 18 17 21 21 C 1.47683 * 120.22045 * 179.97438 * 20 19 18 22 22 O 1.21471 * 120.00581 * 180.02562 * 21 20 19 23 23 O 1.34728 * 119.99662 * 0.02562 * 21 20 19 24 24 C 1.39304 * 120.00010 * 84.99592 * 16 15 6 25 25 C 1.43198 * 120.21602 * 0.02562 * 24 16 15 26 26 N 7.50097 * 127.83659 * 356.09012 * 2 1 3 27 27 H 1.08993 * 109.47216 * 300.00261 * 1 2 3 28 28 H 1.08996 * 109.46818 * 60.00370 * 1 2 3 29 29 H 1.09000 * 109.46767 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47180 * 60.00257 * 5 3 2 31 31 H 1.08999 * 109.47270 * 300.00125 * 5 3 2 32 32 H 0.96998 * 120.00077 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.46695 * 328.37188 * 15 6 5 34 34 H 1.09001 * 109.46623 * 208.38039 * 15 6 5 35 35 H 1.07995 * 119.78672 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.78106 * 179.72331 * 18 17 16 37 37 H 1.08004 * 120.00736 * 180.02562 * 19 18 17 38 38 H 0.96703 * 116.99842 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1762 3.3357 -1.1863 8 1 4.5710 4.3410 -1.1891 9 6 3.8661 2.7085 -2.3852 10 7 2.9604 1.7540 -2.4135 11 14 4.7341 3.2194 -3.9584 12 1 5.7013 4.3059 -3.6597 13 1 5.4591 2.0536 -4.5247 14 1 3.7323 3.7044 -4.9415 15 6 4.1888 3.3831 1.2683 16 6 5.6120 3.1883 1.7241 17 6 5.9211 2.1736 2.6094 18 6 7.2241 1.9903 3.0384 19 6 8.2338 2.8154 2.5820 20 6 7.9433 3.8407 1.6845 21 6 9.0187 4.7260 1.1938 22 8 8.7609 5.6189 0.4117 23 8 10.2857 4.5432 1.6137 24 6 6.6168 4.0276 1.2482 25 6 6.3026 5.0773 0.3263 26 7 6.0532 5.9102 -0.4039 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 2.7434 1.3159 -3.2513 33 1 3.5084 2.9837 2.0204 34 1 3.9939 4.4466 1.1301 35 1 5.1402 1.5219 2.9724 36 1 7.4532 1.1966 3.7341 37 1 9.2483 2.6659 2.9210 38 1 10.9552 5.1478 1.2653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606463812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:31 Heat of formation + Delta-G solvation = -77.941017 kcal Electronic energy + Delta-G solvation = -26774.612559 eV Core-core repulsion = 22777.220963 eV Total energy + Delta-G solvation = -3997.391596 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.56811 -39.17144 -38.82346 -36.31403 -36.12752 -35.54416 -34.65841 -32.52430 -31.44190 -30.60653 -28.24676 -26.31327 -25.99047 -25.00495 -23.02634 -22.04617 -20.82597 -19.81837 -18.51011 -17.92194 -17.11294 -16.83466 -16.32794 -15.73362 -15.54286 -15.39264 -15.16417 -14.95769 -14.82905 -14.08157 -13.83838 -13.44765 -13.22581 -13.09651 -12.74197 -12.42235 -12.28137 -12.25761 -12.01403 -11.84274 -11.61146 -11.55264 -11.29927 -11.13508 -11.04571 -10.78257 -10.54698 -10.45390 -10.10719 -9.88626 -9.67894 -9.24978 -9.02248 -8.71050 -8.55589 -7.27977 -6.00620 -3.26121 0.49866 1.12892 2.53427 2.87630 3.33260 3.35454 3.40963 3.44988 3.53447 3.78718 3.97073 4.13984 4.32684 4.47744 4.74742 4.91711 4.95843 5.24135 5.27032 5.34131 5.37283 5.61062 5.76097 5.81448 5.86012 5.94413 6.05566 6.08718 6.18296 6.30659 6.36866 6.37463 6.58260 6.63400 6.74257 7.04512 7.64114 7.75421 7.81656 8.04335 8.18281 8.93820 9.31410 9.61159 9.98946 11.10309 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.005125 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.296545 B = 5461.769629 C = 6824.370577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.381 6.381 3 C 0.466 3.534 4 O -0.510 6.510 5 C 0.184 3.816 6 N -0.558 5.558 7 C -0.259 4.259 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.290 1.290 15 C 0.173 3.827 16 C -0.050 4.050 17 C -0.076 4.076 18 C -0.113 4.113 19 C -0.072 4.072 20 C -0.097 4.097 21 C 0.521 3.479 22 O -0.498 6.498 23 O -0.512 6.512 24 C 0.060 3.940 25 C 0.256 3.744 26 N -0.388 5.388 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.258 0.742 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -4.775 13.938 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.299 6.299 3 C 0.306 3.694 4 O -0.395 6.395 5 C 0.055 3.945 6 N -0.276 5.276 7 C -0.387 4.387 8 H 0.110 0.890 9 C -0.190 4.190 10 N -0.546 5.546 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.217 1.217 15 C 0.046 3.954 16 C -0.056 4.056 17 C -0.095 4.095 18 C -0.132 4.132 19 C -0.090 4.090 20 C -0.100 4.100 21 C 0.364 3.636 22 O -0.386 6.386 23 O -0.324 6.324 24 C 0.056 3.944 25 C -0.060 4.060 26 N -0.063 5.063 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 8.085 -3.241 12.552 15.278 hybrid contribution 0.541 0.297 -1.155 1.310 sum 8.626 -2.944 11.397 14.593 Atomic orbital electron populations 1.22858 0.79828 1.01336 1.01249 1.86545 1.20952 1.36679 1.85681 1.25542 0.93479 0.80196 0.70174 1.90480 1.66738 1.36530 1.45726 1.20654 0.85451 0.86314 1.02050 1.44057 1.74572 1.07900 1.01053 1.19607 1.36769 0.99917 0.82414 0.89033 1.24673 0.97634 0.98830 0.97869 1.69884 1.29504 1.28836 1.26379 0.86287 0.79879 0.78152 0.83240 1.19824 1.21209 1.21713 1.19890 0.88143 0.98318 0.89098 1.21236 0.98564 0.92691 0.93109 1.21316 0.96933 0.95982 0.95259 1.21292 0.92549 0.99263 1.00049 1.21267 1.00301 0.92806 0.94668 1.18917 0.89956 0.98710 1.02437 1.20894 0.82105 0.82468 0.78118 1.90982 1.83035 1.32128 1.32415 1.84530 1.18565 1.60245 1.69082 1.15772 0.91700 0.92744 0.94219 1.24894 0.93739 0.93277 0.94073 1.81041 1.07617 1.10461 1.07225 0.93623 0.92893 0.90110 0.85989 0.92865 0.93140 0.91857 0.91573 0.84548 0.84730 0.84080 0.72812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.38 -7.94 10.57 -39.25 -0.41 -8.35 16 3 C 0.47 10.89 6.13 36.01 0.22 11.11 16 4 O -0.51 -13.63 16.06 -18.75 -0.30 -13.93 16 5 C 0.18 4.01 5.55 -5.19 -0.03 3.98 16 6 N -0.56 -12.84 2.00 -175.97 -0.35 -13.19 16 7 C -0.26 -6.92 9.20 -15.06 -0.14 -7.06 16 8 H 0.09 2.52 5.27 -52.48 -0.28 2.24 16 9 C 0.01 0.21 4.92 -17.43 -0.09 0.12 16 10 N -0.90 -25.14 9.08 55.49 0.50 -24.63 16 11 Si 0.90 22.63 29.62 -169.99 -5.04 17.60 16 12 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 15 C 0.17 3.24 5.38 -5.19 -0.03 3.21 16 16 C -0.05 -0.78 5.49 -104.25 -0.57 -1.35 16 17 C -0.08 -0.87 9.66 -39.55 -0.38 -1.25 16 18 C -0.11 -1.04 10.02 -39.55 -0.40 -1.43 16 19 C -0.07 -0.73 9.61 -39.21 -0.38 -1.11 16 20 C -0.10 -1.34 5.90 -104.64 -0.62 -1.96 16 21 C 0.52 7.30 8.24 34.59 0.29 7.59 16 22 O -0.50 -9.01 15.12 -19.24 -0.29 -9.30 16 23 O -0.51 -4.86 12.68 -40.57 -0.51 -5.37 16 24 C 0.06 1.01 5.76 -106.58 -0.61 0.39 16 25 C 0.26 5.30 9.59 -22.49 -0.22 5.09 16 26 N -0.39 -9.02 17.25 41.82 0.72 -8.30 16 27 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 28 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.12 2.94 6.11 -51.93 -0.32 2.62 16 31 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.06 1.06 8.00 -51.93 -0.42 0.64 16 34 H 0.07 1.35 7.16 -51.93 -0.37 0.98 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.14 1.08 7.61 -52.48 -0.40 0.68 16 38 H 0.41 2.15 9.11 45.56 0.42 2.57 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -36.48 339.86 -5.48 -41.96 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.03 Total: -0.74 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: -1.88 Total: 19.13 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.87 Total: -46.12 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.52 Total: -36.95 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.04 Total: 17.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.48 -5.48 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606463812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.982 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds