Wall clock time and date at job start Tue Mar 31 2020 11:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99582 * 2 1 4 4 O 1.20827 * 120.00336 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99901 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46996 * 179.97438 * 5 3 2 7 7 C 1.36932 * 120.00198 * 270.00003 * 6 5 3 8 8 H 1.08004 * 119.99986 * 185.74496 * 7 6 5 9 9 C 1.38813 * 120.00055 * 5.74298 * 7 6 5 10 10 N 1.31616 * 119.99831 * 25.56980 * 9 7 6 11 11 Si 1.86802 * 119.99886 * 205.56491 * 9 7 6 12 12 H 1.48496 * 109.47238 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46881 * 120.00580 * 11 9 7 14 14 H 1.48501 * 109.47130 * 240.00055 * 11 9 7 15 15 C 1.46505 * 119.99671 * 90.00695 * 6 5 3 16 16 C 1.50699 * 109.47426 * 88.37738 * 15 6 5 17 17 C 1.38162 * 120.00240 * 265.27291 * 16 15 6 18 18 C 1.38401 * 120.43213 * 180.28204 * 17 16 15 19 19 C 1.38148 * 120.43719 * 359.69080 * 18 17 16 20 20 C 1.39321 * 119.99614 * 0.03262 * 19 18 17 21 21 C 1.47683 * 120.22045 * 179.97438 * 20 19 18 22 22 O 1.21471 * 120.00581 * 180.02562 * 21 20 19 23 23 O 1.34728 * 119.99662 * 0.02562 * 21 20 19 24 24 C 1.39304 * 120.00010 * 84.99592 * 16 15 6 25 25 C 1.43198 * 120.21602 * 0.02562 * 24 16 15 26 26 N 7.50097 * 127.83659 * 356.09012 * 2 1 3 27 27 H 1.08993 * 109.47216 * 300.00261 * 1 2 3 28 28 H 1.08996 * 109.46818 * 60.00370 * 1 2 3 29 29 H 1.09000 * 109.46767 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47180 * 60.00257 * 5 3 2 31 31 H 1.08999 * 109.47270 * 300.00125 * 5 3 2 32 32 H 0.96998 * 120.00077 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.46695 * 328.37188 * 15 6 5 34 34 H 1.09001 * 109.46623 * 208.38039 * 15 6 5 35 35 H 1.07995 * 119.78672 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.78106 * 179.72331 * 18 17 16 37 37 H 1.08004 * 120.00736 * 180.02562 * 19 18 17 38 38 H 0.96703 * 116.99842 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1762 3.3357 -1.1863 8 1 4.5710 4.3410 -1.1891 9 6 3.8661 2.7085 -2.3852 10 7 2.9604 1.7540 -2.4135 11 14 4.7341 3.2194 -3.9584 12 1 5.7013 4.3059 -3.6597 13 1 5.4591 2.0536 -4.5247 14 1 3.7323 3.7044 -4.9415 15 6 4.1888 3.3831 1.2683 16 6 5.6120 3.1883 1.7241 17 6 5.9211 2.1736 2.6094 18 6 7.2241 1.9903 3.0384 19 6 8.2338 2.8154 2.5820 20 6 7.9433 3.8407 1.6845 21 6 9.0187 4.7260 1.1938 22 8 8.7609 5.6189 0.4117 23 8 10.2857 4.5432 1.6137 24 6 6.6168 4.0276 1.2482 25 6 6.3026 5.0773 0.3263 26 7 6.0532 5.9102 -0.4039 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 2.7434 1.3159 -3.2513 33 1 3.5084 2.9837 2.0204 34 1 3.9939 4.4466 1.1301 35 1 5.1402 1.5219 2.9724 36 1 7.4532 1.1966 3.7341 37 1 9.2483 2.6659 2.9210 38 1 10.9552 5.1478 1.2653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606463812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:30 Heat of formation + Delta-G solvation = -103.232373 kcal Electronic energy + Delta-G solvation = -26775.709274 eV Core-core repulsion = 22777.220963 eV Total energy + Delta-G solvation = -3998.488312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.62902 -40.79125 -40.03085 -37.74813 -37.48692 -36.91304 -36.43650 -34.09525 -32.48009 -32.18820 -29.85411 -27.75013 -27.66231 -26.07523 -24.42577 -23.39712 -21.98881 -21.53177 -19.65148 -19.01296 -18.87127 -18.09486 -17.89428 -17.30997 -16.85250 -16.76131 -16.59399 -16.49437 -15.87974 -15.67721 -15.22138 -15.15163 -14.64530 -14.36610 -14.08190 -13.91786 -13.83992 -13.80440 -13.44407 -13.21973 -12.99996 -12.86271 -12.69680 -12.61900 -12.60991 -12.35482 -12.26240 -12.01498 -11.91617 -11.55348 -11.35471 -11.08647 -10.53471 -10.00758 -9.80049 -9.13218 -8.06099 -5.28288 -0.54831 0.13087 1.29248 1.35249 1.46491 1.51966 1.86221 1.98377 2.02414 2.13996 2.31890 2.50639 2.88668 3.04706 3.16035 3.61275 3.74537 3.99580 4.06845 4.32998 4.37080 4.43189 4.50230 4.55624 4.61865 4.69031 4.74728 4.86009 4.97626 5.03063 5.22812 5.27865 5.44457 5.50905 5.54646 5.63714 5.87967 5.98146 6.14113 6.67335 6.92344 6.98429 7.50206 7.73625 8.03804 9.02614 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.005125 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.296545 B = 5461.769629 C = 6824.370577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.381 6.381 3 C 0.467 3.533 4 O -0.553 6.553 5 C 0.185 3.815 6 N -0.571 5.571 7 C -0.250 4.250 8 H 0.074 0.926 9 C -0.035 4.035 10 N -0.917 5.917 11 Si 0.934 3.066 12 H -0.294 1.294 13 H -0.273 1.273 14 H -0.300 1.300 15 C 0.173 3.827 16 C -0.060 4.060 17 C -0.066 4.066 18 C -0.083 4.083 19 C -0.049 4.049 20 C -0.109 4.109 21 C 0.524 3.476 22 O -0.552 6.552 23 O -0.490 6.490 24 C 0.018 3.982 25 C 0.273 3.727 26 N -0.462 5.462 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.252 0.748 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.168 0.832 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.048 -8.254 17.579 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.298 6.298 3 C 0.310 3.690 4 O -0.442 6.442 5 C 0.057 3.943 6 N -0.290 5.290 7 C -0.380 4.380 8 H 0.092 0.908 9 C -0.230 4.230 10 N -0.564 5.564 11 Si 0.765 3.235 12 H -0.220 1.220 13 H -0.199 1.199 14 H -0.227 1.227 15 C 0.048 3.952 16 C -0.065 4.065 17 C -0.084 4.084 18 C -0.101 4.101 19 C -0.067 4.067 20 C -0.112 4.112 21 C 0.370 3.630 22 O -0.444 6.444 23 O -0.303 6.303 24 C 0.014 3.986 25 C -0.041 4.041 26 N -0.139 5.139 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.144 0.856 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.186 0.814 36 H 0.206 0.794 37 H 0.196 0.804 38 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 10.041 -6.749 16.242 20.253 hybrid contribution 0.043 1.324 -2.055 2.445 sum 10.085 -5.425 14.186 18.231 Atomic orbital electron populations 1.23150 0.77719 1.04130 1.00593 1.86505 1.22988 1.35241 1.85062 1.25854 0.94178 0.80112 0.68853 1.90462 1.67799 1.38045 1.47875 1.20707 0.84540 0.85744 1.03353 1.44161 1.75070 1.08522 1.01258 1.19647 1.34764 0.99297 0.84251 0.90782 1.25025 0.98859 0.99909 0.99225 1.69984 1.30624 1.29843 1.25973 0.85706 0.78606 0.77423 0.81764 1.22032 1.19876 1.22736 1.19939 0.91115 0.96204 0.87978 1.20821 0.95728 0.94584 0.95356 1.21676 0.99168 0.94269 0.93316 1.21878 0.90696 0.98935 0.98615 1.21769 1.02488 0.90436 0.91992 1.19045 0.88485 1.00079 1.03610 1.21067 0.83339 0.81536 0.77073 1.90983 1.83981 1.34442 1.34969 1.84464 1.17267 1.60408 1.68202 1.16051 0.93914 0.93186 0.95481 1.25815 0.91868 0.93028 0.93393 1.80997 1.09948 1.13005 1.09916 0.92715 0.95190 0.85564 0.88269 0.87572 0.93842 0.89510 0.94880 0.81421 0.79384 0.80423 0.70468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.45 16 2 O -0.38 -15.25 10.57 -51.38 -0.54 -15.79 16 3 C 0.47 21.53 6.13 71.24 0.44 21.97 16 4 O -0.55 -29.90 16.06 21.96 0.35 -29.54 16 5 C 0.19 7.82 5.55 85.63 0.48 8.29 16 6 N -0.57 -26.40 2.00 -710.66 -1.42 -27.82 16 7 C -0.25 -13.84 9.20 84.03 0.77 -13.07 16 8 H 0.07 4.34 5.27 -2.91 -0.02 4.33 16 9 C -0.04 -1.99 4.92 84.86 0.42 -1.57 16 10 N -0.92 -52.38 9.08 21.65 0.20 -52.18 16 11 Si 0.93 48.54 29.62 68.60 2.03 50.57 16 12 H -0.29 -16.11 7.11 99.48 0.71 -15.40 16 13 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 15 C 0.17 6.46 5.38 85.63 0.46 6.92 16 16 C -0.06 -1.73 5.49 -19.63 -0.11 -1.84 16 17 C -0.07 -1.14 9.66 22.29 0.22 -0.93 16 18 C -0.08 -0.92 10.02 22.29 0.22 -0.69 16 19 C -0.05 -0.71 9.61 22.51 0.22 -0.49 16 20 C -0.11 -2.76 5.90 -19.87 -0.12 -2.88 16 21 C 0.52 14.13 8.24 70.32 0.58 14.71 16 22 O -0.55 -20.70 15.12 19.93 0.30 -20.40 16 23 O -0.49 -7.80 12.68 -56.38 -0.71 -8.52 16 24 C 0.02 0.59 5.76 -21.13 -0.12 0.47 16 25 C 0.27 12.03 9.59 88.34 0.85 12.88 16 26 N -0.46 -23.33 17.25 19.00 0.33 -23.00 16 27 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 28 H 0.03 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.10 4.73 6.11 -2.39 -0.01 4.71 16 31 H 0.11 3.27 8.07 -2.39 -0.02 3.25 16 32 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.09 2.75 8.00 -2.39 -0.02 2.73 16 34 H 0.03 1.42 7.16 -2.39 -0.02 1.40 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.19 0.32 8.06 -2.91 -0.02 0.29 16 37 H 0.18 1.39 7.61 -2.91 -0.02 1.36 16 38 H 0.43 3.40 9.11 -74.06 -0.67 2.72 16 Total: -1.00 -88.41 339.86 6.49 -81.93 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 0.46 Total: -1.47 kcal Atomic # 6 Polarization: 40.72 SS G_CDS: 5.50 Total: 46.22 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -0.90 Total: -103.00 kcal Atomic # 8 Polarization: -73.64 SS G_CDS: -0.60 Total: -74.24 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -88.41 6.49 -81.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606463812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.306 kcal (2) G-P(sol) polarization free energy of solvation -88.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds