Wall clock time and date at job start Tue Mar 31 2020 11:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34729 * 116.99751 * 2 1 4 4 O 1.21472 * 119.99893 * 359.97438 * 3 2 1 5 5 C 1.47691 * 119.99766 * 180.02562 * 3 2 1 6 6 C 1.39366 * 120.21456 * 0.02562 * 5 3 2 7 7 C 1.38104 * 119.99220 * 179.97438 * 6 5 3 8 8 C 1.38445 * 120.43769 * 359.97343 * 7 6 5 9 9 C 1.38124 * 120.43428 * 359.78875 * 8 7 6 10 10 C 1.50699 * 120.00502 * 180.23301 * 9 8 7 11 11 N 1.46502 * 109.47364 * 260.23944 * 10 9 8 12 12 C 1.36939 * 120.00342 * 89.99553 * 11 10 9 13 13 H 1.08001 * 119.99457 * 355.32236 * 12 11 10 14 14 C 1.38809 * 120.00029 * 175.32209 * 12 11 10 15 15 N 1.31616 * 120.00315 * 30.59163 * 14 12 11 16 16 Si 1.86805 * 119.99913 * 210.59437 * 14 12 11 17 17 H 1.48496 * 109.47221 * 84.99131 * 16 14 12 18 18 H 1.48497 * 109.46992 * 204.99536 * 16 14 12 19 19 H 1.48501 * 109.46876 * 324.99615 * 16 14 12 20 20 C 1.46501 * 119.99719 * 270.00197 * 11 10 9 21 21 C 1.50695 * 109.47359 * 96.67902 * 20 11 10 22 22 O 1.20821 * 120.00184 * 359.97438 * 21 20 11 23 23 O 1.34232 * 120.00033 * 179.97438 * 21 20 11 24 24 C 1.39342 * 119.99355 * 0.47031 * 9 8 7 25 25 C 1.43205 * 120.21512 * 179.78536 * 24 9 8 26 26 N 4.88407 * 106.02313 * 359.97438 * 2 1 3 27 27 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47866 * 300.00556 * 1 2 3 29 29 H 1.09001 * 109.47322 * 60.00630 * 1 2 3 30 30 H 1.08006 * 120.00127 * 359.95600 * 6 5 3 31 31 H 1.07998 * 119.78223 * 180.02562 * 7 6 5 32 32 H 1.07998 * 119.78079 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47007 * 20.23599 * 10 9 8 34 34 H 1.08996 * 109.47214 * 140.23517 * 10 9 8 35 35 H 0.97001 * 120.00301 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.46714 * 216.68152 * 20 11 10 37 37 H 1.09004 * 109.46772 * 336.67466 * 20 11 10 38 38 H 0.96701 * 117.00403 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2192 -0.0005 5 6 3.5385 1.2778 -0.0006 6 6 4.3019 0.1118 -0.0017 7 6 5.6807 0.1894 -0.0027 8 6 6.3139 1.4206 -0.0033 9 6 5.5748 2.5875 -0.0072 10 6 6.2740 3.9224 -0.0130 11 7 6.2944 4.4690 1.3460 12 6 7.3394 4.1830 2.1835 13 1 8.1101 3.4945 1.8696 14 6 7.4082 4.7779 3.4358 15 7 6.3026 5.0986 4.0737 16 14 9.0701 5.1234 4.2156 17 1 9.5858 6.4268 3.7251 18 1 8.9231 5.1733 5.6925 19 1 10.0227 4.0448 3.8491 20 6 5.1968 5.3216 1.8092 21 6 4.2071 4.4900 2.5836 22 8 4.3986 3.3064 2.7329 23 8 3.1126 5.0641 3.1075 24 6 4.1826 2.5302 -0.0007 25 6 3.4116 3.7370 0.0000 26 7 2.8001 4.6943 -0.0021 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 3.8152 -0.8524 -0.0014 31 1 6.2690 -0.7163 -0.0040 32 1 7.3928 1.4690 -0.0045 33 1 7.2964 3.7955 -0.3690 34 1 5.7422 4.6082 -0.6726 35 1 6.3506 5.5147 4.9486 36 1 5.5935 6.1071 2.4525 37 1 4.6994 5.7722 0.9502 38 1 2.5066 4.4900 3.5956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606616771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:19 Heat of formation + Delta-G solvation = -94.857866 kcal Electronic energy + Delta-G solvation = -27734.125695 eV Core-core repulsion = 23736.000529 eV Total energy + Delta-G solvation = -3998.125166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82984 -40.80152 -39.99468 -37.75509 -37.60550 -37.11896 -36.27407 -34.07680 -32.58291 -32.19952 -29.48762 -28.75528 -27.52949 -25.56507 -24.61909 -23.37896 -22.21582 -21.56542 -19.76207 -18.86347 -18.70920 -18.43775 -17.91256 -17.53067 -17.30121 -16.94806 -16.45813 -16.05488 -15.96420 -15.35738 -15.28495 -15.20013 -14.80158 -14.43743 -14.22786 -14.13910 -13.86469 -13.62517 -13.41738 -13.21575 -13.14730 -12.86076 -12.78101 -12.58078 -12.44253 -12.24218 -12.06252 -11.91232 -11.89693 -11.89522 -11.56581 -11.07648 -10.44484 -9.98764 -9.78456 -9.18358 -8.00756 -5.19873 -0.57105 0.14007 1.41914 1.52651 1.54495 1.57637 1.63297 1.74069 1.96695 2.08720 2.45833 2.71716 2.83310 3.02819 3.23092 3.60459 3.63817 3.83088 4.02327 4.26023 4.27335 4.32821 4.38366 4.43655 4.55077 4.65255 4.68554 4.91613 4.93940 5.06890 5.13705 5.15356 5.19704 5.40804 5.52628 5.69409 5.87345 6.06748 6.10423 6.52007 6.54945 6.94662 7.54902 7.74508 8.11599 9.10549 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.005247 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.682081 B = 5334.705904 C = 6036.130150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.345 6.345 3 C 0.504 3.496 4 O -0.536 6.536 5 C -0.113 4.113 6 C -0.062 4.062 7 C -0.093 4.093 8 C -0.069 4.069 9 C -0.063 4.063 10 C 0.165 3.835 11 N -0.569 5.569 12 C -0.249 4.249 13 H 0.105 0.895 14 C -0.049 4.049 15 N -0.930 5.930 16 Si 0.967 3.033 17 H -0.286 1.286 18 H -0.311 1.311 19 H -0.262 1.262 20 C 0.180 3.820 21 C 0.486 3.514 22 O -0.538 6.538 23 O -0.541 6.541 24 C 0.020 3.980 25 C 0.263 3.737 26 N -0.439 5.439 27 H 0.145 0.855 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.162 0.838 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.249 0.751 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -13.469 -10.619 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C 0.350 3.650 4 O -0.427 6.427 5 C -0.116 4.116 6 C -0.080 4.080 7 C -0.111 4.111 8 C -0.088 4.088 9 C -0.069 4.069 10 C 0.040 3.960 11 N -0.288 5.288 12 C -0.377 4.377 13 H 0.122 0.878 14 C -0.243 4.243 15 N -0.577 5.577 16 Si 0.796 3.204 17 H -0.213 1.213 18 H -0.239 1.239 19 H -0.187 1.187 20 C 0.050 3.950 21 C 0.327 3.673 22 O -0.426 6.426 23 O -0.352 6.352 24 C 0.015 3.985 25 C -0.051 4.051 26 N -0.116 5.116 27 H 0.163 0.837 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.189 0.811 31 H 0.198 0.802 32 H 0.180 0.820 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.208 -11.693 -10.667 16.149 hybrid contribution -0.431 -0.053 1.654 1.710 sum -3.640 -11.746 -9.012 15.246 Atomic orbital electron populations 1.23613 0.74234 1.06205 1.02278 1.86511 1.25202 1.30596 1.83799 1.21477 0.89583 0.81842 0.72050 1.90870 1.67383 1.37180 1.47248 1.19101 0.88818 0.94203 1.09513 1.21662 0.94498 0.96995 0.94841 1.21794 0.93855 0.99158 0.96275 1.21627 1.01822 0.90804 0.94508 1.21154 0.90505 0.99883 0.95380 1.20427 1.01058 0.89018 0.85543 1.44729 1.19088 1.54474 1.10512 1.19710 0.97912 1.23031 0.97058 0.87756 1.25495 0.99743 1.01866 0.97236 1.70126 1.27493 1.46429 1.13671 0.85265 0.80692 0.78744 0.75683 1.21255 1.23876 1.18673 1.20807 0.85978 0.93072 0.95114 1.25209 0.78225 0.87873 0.75968 1.90466 1.74632 1.18784 1.58732 1.84610 1.35349 1.47810 1.67447 1.15968 0.92197 0.85852 1.04436 1.25832 0.92412 0.93203 0.93683 1.81056 1.09225 1.12743 1.08595 0.83730 0.92808 0.91886 0.81081 0.80167 0.82037 0.87087 0.92444 0.94129 0.88621 0.92407 0.75298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.35 -8.78 9.82 -56.39 -0.55 -9.33 16 3 C 0.50 16.93 7.87 70.32 0.55 17.49 16 4 O -0.54 -21.87 14.12 19.92 0.28 -21.59 16 5 C -0.11 -3.66 5.90 -19.87 -0.12 -3.78 16 6 C -0.06 -1.42 9.61 22.51 0.22 -1.20 16 7 C -0.09 -1.84 10.02 22.29 0.22 -1.61 16 8 C -0.07 -1.74 9.65 22.29 0.22 -1.53 16 9 C -0.06 -2.14 5.04 -19.63 -0.10 -2.24 16 10 C 0.16 5.90 5.40 85.63 0.46 6.36 16 11 N -0.57 -26.18 2.07 -710.69 -1.47 -27.66 16 12 C -0.25 -12.15 9.46 84.03 0.80 -11.35 16 13 H 0.10 4.66 7.99 -2.91 -0.02 4.63 16 14 C -0.05 -2.55 4.98 84.86 0.42 -2.13 16 15 N -0.93 -52.82 9.06 21.65 0.20 -52.62 16 16 Si 0.97 42.40 29.65 68.60 2.03 44.44 16 17 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.31 -14.40 7.11 99.48 0.71 -13.70 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 C 0.18 8.98 4.85 85.63 0.42 9.39 16 21 C 0.49 25.21 3.75 71.23 0.27 25.47 16 22 O -0.54 -29.65 14.78 21.98 0.32 -29.32 16 23 O -0.54 -26.36 13.42 -51.44 -0.69 -27.05 16 24 C 0.02 0.74 4.33 -21.13 -0.09 0.65 16 25 C 0.26 11.39 7.68 88.33 0.68 12.06 16 26 N -0.44 -20.31 16.72 19.00 0.32 -19.99 16 27 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.17 2.77 7.61 -2.91 -0.02 2.75 16 31 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.16 3.20 8.03 -2.91 -0.02 3.18 16 33 H 0.11 3.23 7.90 -2.39 -0.02 3.21 16 34 H 0.06 2.02 7.18 -2.39 -0.02 2.00 16 35 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.10 5.27 6.05 -2.39 -0.01 5.25 16 37 H 0.06 2.77 6.22 -2.39 -0.01 2.76 16 38 H 0.39 16.17 9.10 -74.06 -0.67 15.50 16 Total: -1.00 -76.92 330.95 6.04 -70.88 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.46 Total: 22.88 kcal Atomic # 6 Polarization: 44.21 SS G_CDS: 5.14 Total: 49.35 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -0.96 Total: -100.26 kcal Atomic # 8 Polarization: -86.65 SS G_CDS: -0.64 Total: -87.29 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.44 kcal Total: -76.92 6.04 -70.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606616771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.976 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds