Wall clock time and date at job start Tue Mar 31 2020 11:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35682 * 117.00101 * 2 1 4 4 C 1.38482 * 120.13794 * 359.72899 * 3 2 1 5 5 C 1.39478 * 119.80747 * 179.75103 * 4 3 2 6 6 C 1.43200 * 119.95365 * 180.24979 * 5 4 3 7 7 N 5.83908 * 81.30285 * 359.97438 * 2 1 3 8 8 C 1.39840 * 120.08785 * 0.51982 * 5 4 3 9 9 C 1.36523 * 120.28564 * 359.72827 * 8 5 4 10 10 C 1.39819 * 120.19014 * 0.02562 * 9 8 5 11 11 C 1.47463 * 120.04519 * 179.97438 * 10 9 8 12 12 O 1.21630 * 120.00052 * 141.31876 * 11 10 9 13 13 N 1.34777 * 119.99719 * 321.30513 * 11 10 9 14 14 C 1.36799 * 120.00136 * 4.68540 * 13 11 10 15 15 H 1.08000 * 119.99893 * 323.32749 * 14 13 11 16 16 C 1.39090 * 120.00371 * 143.33456 * 14 13 11 17 17 N 1.31331 * 120.00491 * 160.27909 * 16 14 13 18 18 Si 1.86797 * 119.99799 * 340.27639 * 16 14 13 19 19 H 1.48508 * 109.47099 * 89.25437 * 18 16 14 20 20 H 1.48496 * 109.47450 * 209.25540 * 18 16 14 21 21 H 1.48499 * 109.47328 * 329.25427 * 18 16 14 22 22 C 1.46501 * 119.99934 * 184.67865 * 13 11 10 23 23 C 1.52996 * 109.47223 * 85.52959 * 22 13 11 24 24 C 1.50703 * 109.47141 * 180.02562 * 23 22 13 25 25 O 1.20825 * 119.99962 * 359.97438 * 24 23 22 26 26 O 1.34226 * 119.99882 * 180.02562 * 24 23 22 27 27 H 1.09004 * 109.47618 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47436 * 59.99861 * 1 2 3 29 29 H 1.09001 * 109.47650 * 300.00028 * 1 2 3 30 30 H 1.08000 * 120.09628 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.85774 * 179.71072 * 8 5 4 32 32 H 1.08003 * 119.90646 * 180.02562 * 9 8 5 33 33 H 0.97004 * 120.00580 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.47270 * 205.53481 * 22 13 11 35 35 H 1.09006 * 109.47039 * 325.53277 * 22 13 11 36 36 H 1.08995 * 109.47221 * 300.00204 * 23 22 13 37 37 H 1.08997 * 109.46967 * 60.00134 * 23 22 13 38 38 H 0.96701 * 117.00067 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2935 2.3722 -0.0057 5 6 1.9339 3.6112 -0.0004 6 6 1.1600 4.8161 -0.0008 7 7 0.5460 5.7719 -0.0026 8 6 3.3307 3.6785 -0.0003 9 6 4.0751 2.5341 0.0001 10 6 3.4454 1.2857 0.0000 11 6 4.2526 0.0516 -0.0001 12 8 3.8974 -0.9075 0.6581 13 7 5.3839 -0.0135 -0.7298 14 6 5.8345 1.0945 -1.3936 15 1 5.1299 1.7769 -1.8456 16 6 7.2000 1.3422 -1.4866 17 7 7.6594 2.1491 -2.4154 18 14 8.3806 0.5273 -0.2902 19 1 8.8167 -0.7818 -0.8394 20 1 9.5654 1.4002 -0.0917 21 1 7.6983 0.3154 1.0117 22 6 6.1311 -1.2710 -0.8121 23 6 5.5482 -2.1385 -1.9294 24 6 6.3165 -3.4323 -2.0135 25 8 7.2362 -3.6390 -1.2577 26 8 5.9796 -4.3545 -2.9288 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 0.2148 2.3201 -0.0105 31 1 3.8227 4.6400 -0.0010 32 1 5.1535 2.5932 0.0005 33 1 8.6117 2.3216 -2.4805 34 1 7.1784 -1.0580 -1.0262 35 1 6.0550 -1.8016 0.1371 36 1 4.5010 -2.3515 -1.7152 37 1 5.6243 -1.6079 -2.8785 38 1 6.5012 -5.1686 -2.9443 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607065738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:21 Heat of formation + Delta-G solvation = -84.483806 kcal Electronic energy + Delta-G solvation = -26500.236202 eV Core-core repulsion = 22502.560890 eV Total energy + Delta-G solvation = -3997.675313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.38118 -39.97208 -38.60486 -37.61206 -36.07592 -35.93653 -35.19299 -32.49760 -31.77689 -30.40757 -30.07670 -27.27441 -25.52444 -25.22282 -23.53539 -21.94506 -20.91983 -19.53949 -19.25127 -18.02534 -17.63864 -16.70525 -16.41874 -16.37135 -15.78854 -15.68698 -15.56753 -14.84486 -14.83499 -14.15188 -13.82129 -13.73221 -13.66136 -13.55315 -13.21257 -12.85200 -12.70307 -12.50612 -12.47473 -12.20744 -11.96259 -11.88226 -11.47282 -11.32698 -11.21189 -11.05809 -10.96127 -10.80726 -10.34445 -10.21469 -9.92498 -9.36717 -8.82145 -8.65709 -8.09081 -7.97637 -6.64935 -4.25522 0.75164 1.65683 2.47871 2.68733 2.88820 3.04474 3.17801 3.20526 3.24418 3.43498 3.67316 3.91979 3.99702 4.11540 4.27565 4.77491 4.96645 5.05941 5.21050 5.26735 5.30103 5.36466 5.46918 5.53120 5.61478 5.73815 5.87393 6.01496 6.04006 6.19834 6.32317 6.45035 6.47101 6.66428 6.70072 6.99201 7.12542 7.49333 7.54398 7.85662 8.05221 8.12355 8.73704 9.13020 9.45936 10.42748 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.004896 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.526061 B = 5717.479802 C = 7281.951831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.287 6.287 3 C 0.161 3.839 4 C -0.179 4.179 5 C 0.009 3.991 6 C 0.265 3.735 7 N -0.430 5.430 8 C -0.120 4.120 9 C -0.027 4.027 10 C -0.098 4.098 11 C 0.523 3.477 12 O -0.572 6.572 13 N -0.454 5.454 14 C -0.359 4.359 15 H 0.116 0.884 16 C 0.071 3.929 17 N -0.848 5.848 18 Si 0.867 3.133 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.257 1.257 22 C 0.108 3.892 23 C -0.123 4.123 24 C 0.485 3.515 25 O -0.520 6.520 26 O -0.520 6.520 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.173 0.827 33 H 0.279 0.721 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 -4.099 0.624 8.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.199 6.199 3 C 0.113 3.887 4 C -0.201 4.201 5 C 0.005 3.995 6 C -0.050 4.050 7 N -0.106 5.106 8 C -0.141 4.141 9 C -0.045 4.045 10 C -0.102 4.102 11 C 0.313 3.687 12 O -0.455 6.455 13 N -0.175 5.175 14 C -0.485 4.485 15 H 0.133 0.867 16 C -0.139 4.139 17 N -0.482 5.482 18 Si 0.694 3.306 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.181 1.181 22 C -0.015 4.015 23 C -0.162 4.162 24 C 0.327 3.673 25 O -0.408 6.408 26 O -0.331 6.331 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.190 0.810 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -8.098 -2.882 1.057 8.660 hybrid contribution 1.086 -1.035 0.240 1.520 sum -7.012 -3.917 1.297 8.136 Atomic orbital electron populations 1.23095 0.79173 1.03971 1.01004 1.86302 1.20400 1.25531 1.87642 1.18776 0.90998 0.84152 0.94741 1.20965 0.99823 0.90490 1.08807 1.15809 0.91954 0.86413 1.05314 1.25799 0.92994 0.92912 0.93301 1.81209 1.09235 1.10802 1.09318 1.20817 0.90882 0.99884 1.02474 1.21639 1.02934 0.89098 0.90857 1.19548 0.89916 0.95491 1.05280 1.17895 0.83069 0.86935 0.80814 1.90703 1.72385 1.38297 1.44131 1.43529 1.22160 1.08709 1.43053 1.19254 0.92808 1.02681 1.33782 0.86663 1.25312 0.97219 0.95840 0.95497 1.69692 1.15501 1.34690 1.28270 0.87159 0.81028 0.79096 0.83345 1.19075 1.21288 1.18117 1.21558 0.96437 0.85794 0.97707 1.21751 1.01011 0.89505 1.03945 1.23692 0.82006 0.85342 0.76242 1.90703 1.29740 1.78827 1.41507 1.84578 1.61529 1.30640 1.56383 0.88274 0.92813 0.92767 0.84762 0.84807 0.81011 0.91061 0.89847 0.90097 0.87346 0.86727 0.73844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.29 -4.65 9.22 -35.34 -0.33 -4.97 16 3 C 0.16 2.62 6.66 -38.73 -0.26 2.36 16 4 C -0.18 -2.41 8.73 -39.03 -0.34 -2.75 16 5 C 0.01 0.12 5.73 -106.91 -0.61 -0.49 16 6 C 0.26 3.69 15.31 -22.47 -0.34 3.34 16 7 N -0.43 -6.64 18.54 41.84 0.78 -5.86 16 8 C -0.12 -1.70 9.67 -39.60 -0.38 -2.08 16 9 C -0.03 -0.45 7.61 -39.61 -0.30 -0.75 16 10 C -0.10 -1.82 5.38 -104.79 -0.56 -2.38 16 11 C 0.52 11.25 7.12 -12.50 -0.09 11.17 16 12 O -0.57 -13.45 15.70 -11.34 -0.18 -13.62 16 13 N -0.45 -9.84 2.21 -116.02 -0.26 -10.10 16 14 C -0.36 -8.07 6.94 -15.02 -0.10 -8.17 16 15 H 0.12 2.67 6.33 -52.49 -0.33 2.33 16 16 C 0.07 1.66 5.33 -17.45 -0.09 1.56 16 17 N -0.85 -20.90 13.95 55.50 0.77 -20.12 16 18 Si 0.87 19.03 25.06 -169.99 -4.26 14.77 16 19 H -0.26 -5.88 6.42 56.52 0.36 -5.52 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 22 C 0.11 2.26 3.31 -4.04 -0.01 2.25 16 23 C -0.12 -2.18 6.11 -27.88 -0.17 -2.35 16 24 C 0.48 8.08 8.33 36.01 0.30 8.38 16 25 O -0.52 -10.15 16.74 -18.75 -0.31 -10.47 16 26 O -0.52 -6.70 13.42 -39.25 -0.53 -7.22 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 29 H 0.05 0.49 7.68 -51.93 -0.40 0.09 16 30 H 0.13 1.44 6.31 -52.49 -0.33 1.11 16 31 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.17 3.11 5.98 -52.48 -0.31 2.80 16 33 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.08 1.84 2.96 -51.93 -0.15 1.69 16 35 H 0.08 1.75 7.45 -51.93 -0.39 1.37 16 36 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 38 H 0.40 3.26 9.10 45.56 0.41 3.68 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -30.00 335.76 -4.00 -33.99 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -2.76 Total: 7.22 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -1.98 Total: 11.32 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 1.29 Total: -36.08 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.34 Total: -36.29 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.26 Total: 14.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.00 -4.00 -33.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607065738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.489 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds