Wall clock time and date at job start Tue Mar 31 2020 11:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35682 * 117.00101 * 2 1 4 4 C 1.38482 * 120.13794 * 359.72899 * 3 2 1 5 5 C 1.39478 * 119.80747 * 179.75103 * 4 3 2 6 6 C 1.43200 * 119.95365 * 180.24979 * 5 4 3 7 7 N 5.83908 * 81.30285 * 359.97438 * 2 1 3 8 8 C 1.39840 * 120.08785 * 0.51982 * 5 4 3 9 9 C 1.36523 * 120.28564 * 359.72827 * 8 5 4 10 10 C 1.39819 * 120.19014 * 0.02562 * 9 8 5 11 11 C 1.47463 * 120.04519 * 179.97438 * 10 9 8 12 12 O 1.21630 * 120.00052 * 141.31876 * 11 10 9 13 13 N 1.34777 * 119.99719 * 321.30513 * 11 10 9 14 14 C 1.36799 * 120.00136 * 4.68540 * 13 11 10 15 15 H 1.08000 * 119.99893 * 323.32749 * 14 13 11 16 16 C 1.39090 * 120.00371 * 143.33456 * 14 13 11 17 17 N 1.31331 * 120.00491 * 160.27909 * 16 14 13 18 18 Si 1.86797 * 119.99799 * 340.27639 * 16 14 13 19 19 H 1.48508 * 109.47099 * 89.25437 * 18 16 14 20 20 H 1.48496 * 109.47450 * 209.25540 * 18 16 14 21 21 H 1.48499 * 109.47328 * 329.25427 * 18 16 14 22 22 C 1.46501 * 119.99934 * 184.67865 * 13 11 10 23 23 C 1.52996 * 109.47223 * 85.52959 * 22 13 11 24 24 C 1.50703 * 109.47141 * 180.02562 * 23 22 13 25 25 O 1.20825 * 119.99962 * 359.97438 * 24 23 22 26 26 O 1.34226 * 119.99882 * 180.02562 * 24 23 22 27 27 H 1.09004 * 109.47618 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47436 * 59.99861 * 1 2 3 29 29 H 1.09001 * 109.47650 * 300.00028 * 1 2 3 30 30 H 1.08000 * 120.09628 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.85774 * 179.71072 * 8 5 4 32 32 H 1.08003 * 119.90646 * 180.02562 * 9 8 5 33 33 H 0.97004 * 120.00580 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.47270 * 205.53481 * 22 13 11 35 35 H 1.09006 * 109.47039 * 325.53277 * 22 13 11 36 36 H 1.08995 * 109.47221 * 300.00204 * 23 22 13 37 37 H 1.08997 * 109.46967 * 60.00134 * 23 22 13 38 38 H 0.96701 * 117.00067 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2935 2.3722 -0.0057 5 6 1.9339 3.6112 -0.0004 6 6 1.1600 4.8161 -0.0008 7 7 0.5460 5.7719 -0.0026 8 6 3.3307 3.6785 -0.0003 9 6 4.0751 2.5341 0.0001 10 6 3.4454 1.2857 0.0000 11 6 4.2526 0.0516 -0.0001 12 8 3.8974 -0.9075 0.6581 13 7 5.3839 -0.0135 -0.7298 14 6 5.8345 1.0945 -1.3936 15 1 5.1299 1.7769 -1.8456 16 6 7.2000 1.3422 -1.4866 17 7 7.6594 2.1491 -2.4154 18 14 8.3806 0.5273 -0.2902 19 1 8.8167 -0.7818 -0.8394 20 1 9.5654 1.4002 -0.0917 21 1 7.6983 0.3154 1.0117 22 6 6.1311 -1.2710 -0.8121 23 6 5.5482 -2.1385 -1.9294 24 6 6.3165 -3.4323 -2.0135 25 8 7.2362 -3.6390 -1.2577 26 8 5.9796 -4.3545 -2.9288 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 0.2148 2.3201 -0.0105 31 1 3.8227 4.6400 -0.0010 32 1 5.1535 2.5932 0.0005 33 1 8.6117 2.3216 -2.4805 34 1 7.1784 -1.0580 -1.0262 35 1 6.0550 -1.8016 0.1371 36 1 4.5010 -2.3515 -1.7152 37 1 5.6243 -1.6079 -2.8785 38 1 6.5012 -5.1686 -2.9443 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607065738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:20 Heat of formation + Delta-G solvation = -103.483729 kcal Electronic energy + Delta-G solvation = -26501.060101 eV Core-core repulsion = 22502.560890 eV Total energy + Delta-G solvation = -3998.499211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73602 -41.26702 -40.09549 -38.78381 -37.31147 -37.20893 -36.85629 -34.20894 -33.24118 -31.81696 -31.24913 -28.18991 -27.09072 -26.84545 -24.91791 -23.12011 -22.26451 -21.17633 -20.42131 -19.51850 -19.03931 -18.11932 -17.97654 -17.58932 -17.04690 -17.00936 -16.73010 -16.37289 -16.31014 -15.63390 -15.09836 -14.98425 -14.95086 -14.85020 -14.62435 -14.37333 -14.20723 -13.98620 -13.71230 -13.57118 -13.24027 -13.21823 -12.93522 -12.68725 -12.58786 -12.46312 -12.18685 -12.04724 -11.84313 -11.74034 -11.63349 -11.11474 -10.51033 -9.96174 -9.78029 -9.21849 -8.47746 -6.06916 -0.48181 0.47242 1.14346 1.23160 1.37085 1.44651 1.55413 1.61918 1.90506 2.19294 2.23446 2.39567 2.65558 2.77226 2.84738 3.08949 3.82796 3.85801 3.89169 4.01185 4.13939 4.21830 4.34804 4.46520 4.48837 4.56078 4.59186 4.67564 4.80974 4.86535 4.88172 5.06500 5.27867 5.37697 5.42943 5.55141 5.73900 6.08618 6.26595 6.37027 6.46418 6.95732 6.96441 7.39219 7.74540 8.63240 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.004896 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.526061 B = 5717.479802 C = 7281.951831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.161 3.839 4 C -0.161 4.161 5 C 0.024 3.976 6 C 0.285 3.715 7 N -0.448 5.448 8 C -0.112 4.112 9 C -0.032 4.032 10 C -0.134 4.134 11 C 0.523 3.477 12 O -0.597 6.597 13 N -0.464 5.464 14 C -0.339 4.339 15 H 0.110 0.890 16 C 0.049 3.951 17 N -0.879 5.879 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.106 3.894 23 C -0.118 4.118 24 C 0.496 3.504 25 O -0.552 6.552 26 O -0.504 6.504 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.169 0.831 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.281 0.719 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.311 -3.880 0.306 10.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.113 3.887 4 C -0.182 4.182 5 C 0.020 3.980 6 C -0.030 4.030 7 N -0.124 5.124 8 C -0.133 4.133 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.314 3.686 12 O -0.482 6.482 13 N -0.185 5.185 14 C -0.466 4.466 15 H 0.127 0.873 16 C -0.158 4.158 17 N -0.515 5.515 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.017 4.017 23 C -0.156 4.156 24 C 0.340 3.660 25 O -0.444 6.444 26 O -0.318 6.318 27 H 0.132 0.868 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.186 0.814 31 H 0.173 0.827 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -10.165 -2.685 0.721 10.538 hybrid contribution 1.536 -1.166 0.365 1.963 sum -8.628 -3.851 1.086 9.511 Atomic orbital electron populations 1.23467 0.76315 1.05716 1.02784 1.86264 1.23463 1.25774 1.87496 1.18791 0.90293 0.85239 0.94346 1.21206 1.01281 0.89127 1.06613 1.15773 0.91581 0.86503 1.04106 1.25551 0.92378 0.92408 0.92632 1.81256 1.09962 1.11331 1.09866 1.20922 0.91189 0.99793 1.01395 1.21384 1.02178 0.89547 0.91962 1.19492 0.91077 0.94568 1.08649 1.18404 0.82763 0.87688 0.79759 1.90664 1.72891 1.39636 1.45017 1.43616 1.22542 1.08789 1.43507 1.19140 0.92407 1.02587 1.32477 0.87315 1.25534 0.97926 0.96238 0.96078 1.69714 1.15783 1.36421 1.29590 0.86641 0.80259 0.78319 0.81933 1.19768 1.20957 1.19354 1.21479 0.95987 0.86027 0.98255 1.21571 1.01171 0.89987 1.02887 1.23316 0.81083 0.85473 0.76174 1.90702 1.31127 1.79539 1.42998 1.84500 1.61521 1.31258 1.54517 0.86831 0.90839 0.90980 0.81386 0.82708 0.82931 0.90900 0.91117 0.91550 0.86761 0.86059 0.70970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -9.78 9.22 -74.14 -0.68 -10.47 16 3 C 0.16 4.98 6.66 22.82 0.15 5.14 16 4 C -0.16 -3.80 8.73 22.63 0.20 -3.61 16 5 C 0.02 0.59 5.73 -21.35 -0.12 0.46 16 6 C 0.29 7.01 15.31 88.33 1.35 8.36 16 7 N -0.45 -12.55 18.54 19.00 0.35 -12.19 16 8 C -0.11 -2.98 9.67 22.26 0.22 -2.76 16 9 C -0.03 -1.07 7.61 22.25 0.17 -0.90 16 10 C -0.13 -4.93 5.38 -19.97 -0.11 -5.04 16 11 C 0.52 22.86 7.12 86.67 0.62 23.48 16 12 O -0.60 -28.59 15.70 11.74 0.18 -28.41 16 13 N -0.46 -20.51 2.21 -639.23 -1.41 -21.92 16 14 C -0.34 -15.50 6.94 84.12 0.58 -14.92 16 15 H 0.11 5.10 6.33 -2.91 -0.02 5.09 16 16 C 0.05 2.31 5.33 84.97 0.45 2.76 16 17 N -0.88 -43.84 13.95 21.69 0.30 -43.54 16 18 Si 0.90 40.07 25.06 68.60 1.72 41.79 16 19 H -0.27 -12.24 6.42 99.48 0.64 -11.60 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.11 4.51 3.31 86.38 0.29 4.80 16 23 C -0.12 -4.14 6.11 29.85 0.18 -3.95 16 24 C 0.50 16.16 8.33 71.24 0.59 16.75 16 25 O -0.55 -21.54 16.74 21.97 0.37 -21.18 16 26 O -0.50 -11.93 13.42 -51.38 -0.69 -12.62 16 27 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 29 H 0.07 1.04 7.68 -2.39 -0.02 1.02 16 30 H 0.17 2.81 6.31 -2.91 -0.02 2.79 16 31 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.15 5.65 5.98 -2.91 -0.02 5.64 16 33 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.07 3.19 2.96 -2.39 -0.01 3.18 16 35 H 0.07 2.98 7.45 -2.38 -0.02 2.96 16 36 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 37 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 38 H 0.43 5.81 9.10 -74.06 -0.67 5.14 16 Total: -1.00 -65.32 335.76 6.24 -59.09 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.41 Total: 17.56 kcal Atomic # 6 Polarization: 26.20 SS G_CDS: 5.68 Total: 31.88 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -0.76 Total: -77.65 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -0.82 Total: -72.67 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.72 Total: 41.79 kcal Total: -65.32 6.24 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607065738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.398 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds