Wall clock time and date at job start Tue Mar 31 2020 12:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35336 * 125.69358 * 2 1 4 4 N 1.36184 * 107.13387 * 179.84647 * 3 2 1 5 5 C 1.36294 * 133.91866 * 180.10196 * 4 3 2 6 6 C 1.35472 * 120.53982 * 180.32102 * 5 4 3 7 7 N 1.32702 * 122.12068 * 0.02562 * 6 5 4 8 8 C 1.32416 * 121.17068 * 0.02562 * 7 6 5 9 9 C 1.47575 * 120.59459 * 180.02562 * 8 7 6 10 10 O 1.21638 * 119.99800 * 174.60975 * 9 8 7 11 11 N 1.34776 * 120.00238 * 354.60416 * 9 8 7 12 12 C 1.36672 * 119.99681 * 4.45331 * 11 9 8 13 13 H 1.08003 * 119.99493 * 313.74524 * 12 11 9 14 14 C 1.39165 * 120.00325 * 133.75488 * 12 11 9 15 15 N 1.31279 * 120.00432 * 173.18670 * 14 12 11 16 16 Si 1.86806 * 119.99782 * 353.18435 * 14 12 11 17 17 H 1.48497 * 109.46945 * 94.96375 * 16 14 12 18 18 H 1.48504 * 109.46929 * 214.96441 * 16 14 12 19 19 H 1.48498 * 109.47014 * 334.96380 * 16 14 12 20 20 C 1.46497 * 120.00259 * 184.44373 * 11 9 8 21 21 C 1.53000 * 109.47139 * 90.00229 * 20 11 9 22 22 C 1.50696 * 109.47023 * 179.97438 * 21 20 11 23 23 O 1.20829 * 120.00354 * 0.02562 * 22 21 20 24 24 O 1.34234 * 120.00083 * 180.02562 * 22 21 20 25 25 C 1.37531 * 106.99335 * 0.41095 * 4 3 2 26 26 N 1.31825 * 108.11847 * 359.74252 * 25 4 3 27 27 H 1.09006 * 109.46786 * 269.71211 * 1 2 3 28 28 H 1.09004 * 109.47380 * 149.71904 * 1 2 3 29 29 H 1.08998 * 109.47341 * 29.71326 * 1 2 3 30 30 H 1.07997 * 126.43590 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.72677 * 0.33679 * 5 4 3 32 32 H 1.07994 * 118.93913 * 180.02562 * 6 5 4 33 33 H 0.96997 * 120.00429 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47310 * 210.00892 * 20 11 9 35 35 H 1.08999 * 109.47072 * 330.00416 * 20 11 9 36 36 H 1.08998 * 109.47101 * 300.00270 * 21 20 11 37 37 H 1.08999 * 109.46986 * 60.00134 * 21 20 11 38 38 H 0.96695 * 117.00106 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0991 0.0000 4 7 3.5876 0.6657 0.0035 5 6 4.7963 1.2955 0.0069 6 6 5.9460 0.5788 0.0034 7 7 5.9502 -0.7482 -0.0039 8 6 4.8194 -1.4371 -0.0086 9 6 4.8389 -2.9127 -0.0161 10 8 3.7982 -3.5352 0.0786 11 7 6.0099 -3.5707 -0.1279 12 6 7.1860 -2.8747 -0.1427 13 1 7.2860 -1.9966 -0.7637 14 6 8.2547 -3.2974 0.6420 15 7 9.4242 -2.7119 0.5289 16 14 8.0251 -4.6981 1.8565 17 1 8.4431 -5.9750 1.2242 18 1 8.8544 -4.4482 3.0628 19 1 6.5952 -4.7843 2.2479 20 6 6.0220 -5.0318 -0.2334 21 6 5.9469 -5.4374 -1.7067 22 6 5.9600 -6.9404 -1.8152 23 8 6.0225 -7.6177 -0.8166 24 8 5.9023 -7.5268 -3.0213 25 6 3.5501 -0.7091 -0.0039 26 7 2.2864 -1.0847 -0.0058 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3634 -0.8875 -0.5182 29 1 -0.3634 0.8925 -0.5094 30 1 1.9652 2.1270 -0.0004 31 1 4.8379 2.3746 0.0126 32 1 6.8894 1.1044 0.0067 33 1 10.1690 -3.0063 1.0761 34 1 6.9418 -5.4200 0.2040 35 1 5.1646 -5.4417 0.3004 36 1 5.0271 -5.0491 -2.1441 37 1 6.8043 -5.0275 -2.2405 38 1 5.9131 -8.4935 -3.0404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607902933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:42 Heat of formation + Delta-G solvation = 10.147039 kcal Electronic energy + Delta-G solvation = -26667.560265 eV Core-core repulsion = 22706.281205 eV Total energy + Delta-G solvation = -3961.279060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58638 -40.05323 -39.04315 -37.73755 -35.98411 -35.18008 -33.95870 -32.37907 -31.49854 -30.94932 -29.24472 -27.62346 -25.38353 -25.13462 -23.47590 -22.79106 -21.00570 -20.48731 -19.65297 -18.22650 -17.86663 -17.67749 -16.74759 -16.42139 -15.92503 -15.86102 -15.40564 -15.13907 -14.76286 -14.31499 -14.06921 -13.89000 -13.36764 -13.25755 -13.13349 -12.88147 -12.81867 -12.63331 -12.30728 -12.14081 -11.85388 -11.82139 -11.34338 -11.26117 -10.93519 -10.83776 -10.37314 -10.31459 -9.88823 -9.75420 -9.40389 -9.18071 -8.67115 -8.44291 -7.86259 -7.75062 -6.51840 -4.13602 0.57407 1.63880 2.48287 2.69764 3.06304 3.09675 3.16781 3.21827 3.29843 3.44320 3.90805 4.06352 4.36386 4.41490 4.62682 4.65713 4.86132 5.04755 5.26503 5.29609 5.33796 5.43782 5.52366 5.68248 5.72834 5.75684 5.85979 5.99372 6.05617 6.14745 6.23053 6.42308 6.56790 6.70491 6.82150 7.13782 7.23516 7.91277 8.09198 8.12561 8.25855 8.39913 8.84144 9.17096 9.48126 10.53128 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.004974 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.759838 B = 5627.768091 C = 7053.117634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.042 3.958 3 C -0.098 4.098 4 N -0.353 5.353 5 C -0.015 4.015 6 C 0.043 3.957 7 N -0.383 5.383 8 C 0.187 3.813 9 C 0.521 3.479 10 O -0.560 6.560 11 N -0.436 5.436 12 C -0.300 4.300 13 H 0.140 0.860 14 C 0.067 3.933 15 N -0.846 5.846 16 Si 0.871 3.129 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.258 1.258 20 C 0.112 3.888 21 C -0.124 4.124 22 C 0.485 3.515 23 O -0.519 6.519 24 O -0.519 6.519 25 C 0.201 3.799 26 N -0.440 5.440 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.180 0.820 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.277 0.723 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 5.741 -4.100 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.232 4.232 4 N -0.026 5.026 5 C -0.140 4.140 6 C -0.098 4.098 7 N -0.098 5.098 8 C 0.024 3.976 9 C 0.310 3.690 10 O -0.441 6.441 11 N -0.156 5.156 12 C -0.429 4.429 13 H 0.157 0.843 14 C -0.142 4.142 15 N -0.481 5.481 16 Si 0.698 3.302 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.182 1.182 20 C -0.011 4.011 21 C -0.163 4.163 22 C 0.328 3.672 23 O -0.407 6.407 24 O -0.331 6.331 25 C -0.048 4.048 26 N -0.161 5.161 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.197 0.803 31 H 0.180 0.820 32 H 0.193 0.807 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.936 4.678 -3.702 9.149 hybrid contribution -0.108 0.298 0.732 0.798 sum -7.045 4.977 -2.970 9.122 Atomic orbital electron populations 1.20081 0.87030 1.02878 1.02511 1.21146 0.96982 0.88064 1.02993 1.22266 0.80854 1.00847 1.19194 1.42708 1.05997 1.09016 1.44878 1.22558 0.83429 0.99968 1.08055 1.22521 0.96972 0.91046 0.99270 1.69489 1.25333 1.06106 1.08865 1.22210 0.82924 0.95164 0.97268 1.17401 0.84396 0.84465 0.82722 1.90785 1.32138 1.66813 1.54409 1.43681 1.06452 1.04161 1.61312 1.19917 0.86847 1.11355 1.24822 0.84304 1.25484 0.95166 0.97313 0.96246 1.69559 1.00739 1.39892 1.37927 0.86999 0.79822 0.81973 0.81389 1.19484 1.21313 1.18235 1.21512 1.03207 0.82909 0.93429 1.21739 1.06689 0.86638 1.01214 1.23622 0.71053 0.92350 0.80185 1.90708 1.45869 1.66168 1.37957 1.84573 1.85761 1.28215 1.34519 1.22726 0.94732 0.80226 1.07134 1.70541 0.98044 1.28238 1.19253 0.91017 0.90646 0.91185 0.80262 0.82011 0.80702 0.91196 0.90733 0.89409 0.87213 0.86496 0.73776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.40 16 2 C 0.04 0.69 7.07 -82.87 -0.59 0.10 16 3 C -0.10 -1.40 11.70 -16.65 -0.19 -1.59 16 4 N -0.35 -5.92 2.95 -61.10 -0.18 -6.10 16 5 C -0.02 -0.21 11.00 -16.56 -0.18 -0.39 16 6 C 0.04 0.68 11.01 -18.16 -0.20 0.48 16 7 N -0.38 -7.95 6.50 -8.70 -0.06 -8.01 16 8 C 0.19 4.18 6.86 -80.55 -0.55 3.63 16 9 C 0.52 12.64 7.62 -12.45 -0.09 12.55 16 10 O -0.56 -14.55 15.80 5.24 0.08 -14.46 16 11 N -0.44 -10.29 2.11 -116.00 -0.24 -10.53 16 12 C -0.30 -7.37 8.09 -15.05 -0.12 -7.49 16 13 H 0.14 3.54 6.11 -52.48 -0.32 3.22 16 14 C 0.07 1.69 5.47 -17.44 -0.10 1.59 16 15 N -0.85 -21.94 13.95 55.51 0.77 -21.16 16 16 Si 0.87 20.47 24.66 -169.99 -4.19 16.27 16 17 H -0.27 -6.21 6.93 56.52 0.39 -5.81 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.26 -6.29 6.75 56.52 0.38 -5.91 16 20 C 0.11 2.45 3.19 -4.04 -0.01 2.44 16 21 C -0.12 -2.23 6.13 -27.88 -0.17 -2.41 16 22 C 0.49 8.21 8.33 36.00 0.30 8.51 16 23 O -0.52 -10.28 16.74 -18.75 -0.31 -10.60 16 24 O -0.52 -6.79 13.42 -39.27 -0.53 -7.32 16 25 C 0.20 4.20 7.66 -154.01 -1.18 3.02 16 26 N -0.44 -9.27 10.75 -7.52 -0.08 -9.35 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.18 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.07 1.70 3.25 -51.93 -0.17 1.53 16 35 H 0.09 2.00 7.32 -51.93 -0.38 1.62 16 36 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 38 H 0.40 3.35 9.10 45.56 0.41 3.76 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -33.98 331.18 -5.47 -39.44 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.00 Total: 6.78 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: -2.72 Total: 20.05 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.21 Total: -55.16 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.76 Total: -32.38 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.19 Total: 16.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.98 -5.47 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607902933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.590 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds